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ONTOLOGY REPORT - ANNOTATIONS

Term:all-trans retinal binding
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Accession:GO:0005503 term browser browse the term
Definition:Binding to all-trans retinal, a compound that plays an important role in the visual process in most vertebrates. All-trans retinal (trans r., visual yellow) results from the bleaching of rhodopsin by light, in which the 11-cis form is converted to the all-trans form. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: all-trans retinaldehyde binding;   trans retinal binding;   visual yellow binding
 broad_synonym: vitamin A binding
 related_synonym: xanthopsin


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all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:96,659,703...96,784,876
Ensembl chr 1:95,386,266...95,514,589 		JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide enables IEA Ensembl GO_REF:0000107 NCBI chr 4:91,522,444...91,543,086
Ensembl chr 4:102,183,956...102,206,923 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150 		JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables ISO (PMID:26936974) UniProt PMID:26936974 NCBI chr 7:1,140,855...1,147,788
Ensembl chr 7:1,353,510...1,362,781 		JBrowse link
G OPN3 opsin 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 17494
    binding 16143
      small molecule binding 5268
        vitamin binding 139
          retinal binding 13
            all-trans retinal binding 5
Path 2
Term Annotations click to browse term
  molecular_function 17494
    binding 16143
      lipid binding 802
        isoprenoid binding 38
          retinoid binding 36
            retinal binding 13
              all-trans retinal binding 5
paths to the root