Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:outer dense fiber
go back to main search page
Accession:GO:0001520 term browser browse the term
Definition:A supramolecular fiber found in the flagella of mammalian sperm that surrounds the nine microtubule doublets. These dense fibers are stiff and noncontractile. In human, they consist of about 10 major and at least 15 minor proteins, where all major proteins are ODF1, ODF2 or ODF2-related proteins.
Synonyms:exact_synonym: outer dense fibre
 only_in_taxon: NCBITaxon:40674 ! Mammalia


show annotations for term's descendants           Sort by:
outer dense fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:16790685)		 Ensembl
RGD		 PMID:16790685 GO_REF:0000107 NCBI chr 3:15,912,431...15,923,045
Ensembl chr 3:15,912,485...15,923,041 		JBrowse link
G Cimap1a ciliary microtubule associated protein 1A is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:12079992)		 GO_Central
RGD		 PMID:12079992 GO_REF:0000033 NCBI chr 1:195,926,034...195,929,250
Ensembl chr 1:195,926,041...195,929,248 		JBrowse link
G Ctsh cathepsin H IDA RGD PMID:12838426 RGD:5686399 NCBI chr 8:90,608,941...90,627,824
Ensembl chr 8:90,608,941...90,627,824 		JBrowse link
G Ddx6 DEAD-box helicase 6 IDA RGD PMID:24141902 RGD:10755411 NCBI chr 8:44,931,127...44,967,773
Ensembl chr 8:44,931,974...44,964,405 		JBrowse link
G Flacc1 flagellum associated containing coiled-coil domains 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 9:60,315,581...60,343,692
Ensembl chr 9:60,315,582...60,343,648 		JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate IDA RGD PMID:21764106 RGD:9685331 NCBI chr20:40,685,315...40,691,012
Ensembl chr20:40,685,315...40,691,012 		JBrowse link
G Odf1 outer dense fiber of sperm tails 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:12079992)
PR:Q8K273 (PMID:37371084)		 GO_Central
RGD		 PMID:12079992 PMID:37371084 GO_REF:0000033 NCBI chr 7:69,377,427...69,389,662
Ensembl chr 7:69,380,116...69,389,664 		JBrowse link
G Odf2 outer dense fiber of sperm tails 2 IDA RGD PMID:9698445 RGD:69913 NCBI chr 3:13,160,981...13,207,223
Ensembl chr 3:13,161,494...13,206,985 		JBrowse link
G Odf4 outer dense fiber of sperm tails 4 located_in IEA
ISO		 GO_REF:0000107
(PMID:12079992)		 Ensembl
RGD		 PMID:12079992 GO_REF:0000107 NCBI chr10:53,628,592...53,634,525
Ensembl chr10:53,628,759...53,634,359 		JBrowse link
G Pmfbp1 polyamine modulated factor 1 binding protein 1 TAS RGD PMID:11774381 RGD:724397 NCBI chr19:37,458,126...37,507,880
Ensembl chr19:37,458,108...37,507,879 		JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO (PMID:18453535) RGD PMID:18453535 NCBI chr20:9,341,910...9,360,640
Ensembl chr20:9,341,913...9,360,640 		JBrowse link
G Tmem232 transmembrane protein 232 is_active_in ISO PR:Q61999 (PMID:37371084) RGD PMID:37371084 NCBI chr 9:104,887,669...105,115,737
Ensembl chr 9:104,887,669...105,143,027 		JBrowse link
G Txndc2 thioredoxin domain containing 2 IDA RGD PMID:12149401 RGD:1549680 NCBI chr 9:105,230,575...105,235,131
Ensembl chr 9:105,230,578...105,235,126 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20629
    cellular anatomical entity 20391
      supramolecular complex 1392
        supramolecular polymer 1040
          supramolecular fiber 1033
            polymeric cytoskeletal fiber 775
              outer dense fiber 13
Path 2
Term Annotations click to browse term
  cellular_component 20629
    cellular anatomical entity 20391
      organelle 13803
        membrane-bounded organelle 12398
          cilium 799
            motile cilium 293
              9+2 motile cilium 221
                sperm flagellum 201
                  outer dense fiber 13
paths to the root