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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:Townes-Brocks syndrome
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Accession:DOID:0050887 term browser browse the term
Definition:A syndrome that is characterized by imperforate anus, dysplastic ears often associated with sensorineural and/or conductive hearing impairment, and thumb malformations. (DO)
Synonyms:exact_synonym: Deafness-Imperforate Anus-Hypoplastic Thumbs Syndrome;   REAR syndrome;   SALL1-RELATED CONDITION;   TBS1;   Townes Syndrome;   Townes-Brocks syndrome 1;   anal-ear-renal-radial malformation syndrome;   imperforate anus with hand, foot, and ear anomalies;   imperforate anus-hand and foot anomalies syndrome;   renal-ear-anal-radial syndrome;   renal-ear-anal-radial syndrome (rear);   sensorineural deafness with imperforate anus and hypoplastic thumbs;   sensorineural deafness with imperforate anus and thumb anomalies;   sensorineural deafness-imperforate anus-hypoplastic thumbs syndrome
 related_synonym: Townes-Brocks-branchiootorenal-like syndrome
 primary_id: MESH:C536974
 alt_id: OMIM:107480
 xref: GARD:7784;   OMIM:PS107480


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Townes-Brocks syndrome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DACT1 dishevelled binding antagonist of beta catenin 1 EXP CTD Direct Evidence: marker/mechanism CTD NCBI chr14:58,634,061...58,648,321
Ensembl chr14:58,633,967...58,648,321 		JBrowse link
G SALL1 spalt like transcription factor 1 IAGP
ISS
EXP		 ClinVar Annotator: match by term: Townes-Brocks syndrome 1
ClinVar Annotator: match by term: Townes syndrome | ClinVar Annotator: match by term: Townes-Brocks syndrome 1
ClinVar Annotator: match by term: Deafness, sensorineural, with imperforate anus and hypoplastic thumbs | ClinVar Annotator: match by term: SALL1-related condition | ClinVar Annotator: match by term: Townes-Brocks syndrome 1
ClinVar Annotator: match by term: Townes-Brocks-branchiootorenal-like syndrome
OMIM:107480
CTD Direct Evidence: marker/mechanism		 ClinVar
MouseDO
CTD
OMIM		 PMID:8133838 PMID:9425907 PMID:9536098 PMID:9973281 PMID:10533063 More... NCBI chr16:51,135,982...51,152,334
Ensembl chr16:51,135,982...51,152,334 		JBrowse link
Townes-Brocks Syndrome 2 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DACT1 dishevelled binding antagonist of beta catenin 1 IAGP ClinVar Annotator: match by term: Townes-Brocks syndrome 2 ClinVar
OMIM		 PMID:25741868 PMID:28054444 PMID:28492532 PMID:36066768 NCBI chr14:58,634,061...58,648,321
Ensembl chr14:58,633,967...58,648,321 		JBrowse link
Townes-Brocks-Branchiootorenal-Like Syndrome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SALL1 spalt like transcription factor 1 IAGP ClinVar Annotator: match by term: Townes-Brocks-branchiootorenal-like syndrome ClinVar PMID:9973281 PMID:10928856 PMID:14755477 PMID:16088922 PMID:23069192 More... NCBI chr16:51,135,982...51,152,334
Ensembl chr16:51,135,982...51,152,334 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 35756
    syndrome 18145
      Townes-Brocks syndrome 2
        Townes-Brocks Syndrome 2 1
        Townes-Brocks-Branchiootorenal-Like Syndrome 1
Path 2
Term Annotations click to browse term
  disease 35756
    Pathological Conditions, Signs and Symptoms 21495
      Signs and Symptoms 16346
        Neurologic Manifestations 15414
          sensory system disease 9761
            Otorhinolaryngologic Diseases 2288
              auditory system disease 1342
                Hearing Disorders 1142
                  Hearing Loss 1136
                    sensorineural hearing loss 906
                      Townes-Brocks syndrome 2
                        Townes-Brocks Syndrome 2 1
                        Townes-Brocks-Branchiootorenal-Like Syndrome 1
paths to the root