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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:Chlamydia pneumonia
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Accession:DOID:0040083 term browser browse the term
Definition:A bacterial pneumonia has_material_basis_in Chlamydia pneumoniae. (DO)
Synonyms:exact_synonym: Chlamydial Pneumonia;   Chlamydial Pneumonias;   chlamydophila pneumonia;   chlamydophila pneumonias
 primary_id: MESH:D061387
 xref: ICD10CM:J16.0;   ICD9CM:483.1


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Chlamydia pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD274 CD274 molecule ISO mRNA:increased expression:lung RGD PMID:26378990 RGD:41412180 NCBI chr 9:5,450,542...5,470,554
Ensembl chr 9:5,450,503...5,470,566 		JBrowse link
G PDCD1 programmed cell death 1 ISO mRNA:increased expression:lung RGD PMID:26378990 RGD:41412180 NCBI chr 2:241,849,884...241,858,894
Ensembl chr 2:241,849,884...241,858,894 		JBrowse link
G PIK3CD phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta severity ISO RGD PMID:29893841 RGD:40890270 NCBI chr 1:9,627,258...9,729,114
Ensembl chr 1:9,629,889...9,729,114 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 35773
    disease by infectious agent 2740
      Bacterial Infections and Mycoses 1246
        bacterial infectious disease 1003
          commensal bacterial infectious disease 74
            chlamydia 18
              Chlamydia pneumonia 3
Path 2
Term Annotations click to browse term
  disease 35773
    disease of anatomical entity 32516
      Urogenital Diseases 6481
        Female Urogenital Diseases and Pregnancy Complications 3024
          Female Urogenital Diseases 2491
            female reproductive system disease 2488
              Sexually Transmitted Diseases 248
                Bacterial Sexually Transmitted Diseases 21
                  chlamydia 18
                    Chlamydia pneumonia 3
paths to the root