Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 203,236 (bp)   Positions: 246
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
Crl:SD (UDEL) 
.016
.048
.003
.005
.035
.002
.0
.039
.028
.001
.0
.006
.002
.473
.023
.15
.079
.0
.071
.0
.881
.002
.002
.605
.068
.004
.0
.83
.001
.094
.014
.005
.039
.0
.042
.001
.0
.003
.034
.003
.004
.0
.0
.001
.002
.328
.028
.002
.039
.231
.016
.012
--
.03
.573
.104
.093
.016
.006
.002
.005
.0
.018
.002
.58
.0
.0
.0
.001
--
.029
.899
.002
.098
.121
.011
.001
.02
.0
.002
.242
.008
.006
.002
--
.135
.0
.0
.026
.002
.005
.002
.774
.026
.008
.001
.0
.144
--
.002
.001
.001
.0
.0
.0
.0
.001
.0
.0
.002
.006
.001
.002
.0
.034
.011
.077
.006
.002
.001
.0
.002
.0
.001
.022
.026
.027
.001
.0
.129
.002
.0
.042
.001
.003
.004
.001
.0
.0
.011
--
.0
.001
.0
.006
.001
.004
.119
.016
--
--
--
--
--
--
--
--
--
--
--
--
.134
.001
.0
.25
.297
.338
.344
.168
.001
.002
.0
.001
.001
.001
.988
.089
.011
.001
.009
.0
.017
.0
.978
.995
.182
.032
--
.003
.019
.05
.0
.003
.015
.0
.001
.003
.04
.006
.0
.0
.354
.009
.08
.001
.04
.004
.004
.016
.103
.0
.001
.0
.0
.0
.03
--
.068
.0
.001
.0
.117
.003
.003
.0
.0
.0
.013
.138
.003
.008
.001
.092
.0
.007
.001
.997
.002
.001
.001
.039
.001
.0
.0
.034
.03
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
Tg
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Sla
Sla
Sla
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
C
A
T
T
A
G
2
A
3
G
A
T
C
T
C
A
A
A
C
T
C
C
T
A
C
4
T
C
C
T
A
G
G
G
T
G
G
C
A
A
A
G
T
C
T
G
A
6
G
C
G
T
4
G
C
C
G
2
C
A
G
T
C
C
C
C
T
C
A
T
G
G
T
A
T
T
G
C
T
C
G
T
T
T
T
C
C
A
T
C
T
T
C
A
A
C
A
T
T
T
2
C
C
A
T
C
C
A
G
C
T
C
C
G
17
T
G
A
A
A
T
A
C
A
C
C
C
T
T
T
5
T
T
A
G
A
T
C
A
A
T
G
G
G
T
G
G
G
5
5
T
A
C
T
T
C
C
T
G
C
C
G
A
G
T
T
A
A
T
C
C
T
A
T
A
A
A
4
T
A
G
C
C
4
T
G
3
C
T
C
4
3
3
A
T
A
T
A
A
G
C
T
A
A
A
C
C
A
C
A
G
T
A
A
T
C
T
T
C
A
7
G
G
T
A
G
G
G
A
4
G
A
G
T
C
A
G
A
G
A
C
G
G
G
G
A
  107,402,827
  107,403,928
  107,404,094
  107,405,318
  107,405,486
  107,405,559
  107,405,687
  107,406,030
  107,406,080
  107,408,508
  107,409,823
  107,410,633
  107,410,803
  107,410,852
  107,410,892
  107,411,754
  107,411,819
  107,412,868
  107,412,958
  107,412,979
  107,415,903
  107,417,232
  107,421,020
  107,422,015
  107,422,647
  107,425,579
  107,426,773
  107,427,279
  107,427,569
  107,427,910
  107,427,947
  107,427,974
  107,428,225
  107,428,447
  107,428,636
  107,428,991
  107,431,826
  107,431,847
  107,432,053
  107,432,897
  107,434,131
  107,434,810
  107,434,878
  107,434,892
  107,435,034
  107,435,089
  107,436,284
  107,436,570
  107,436,684
  107,436,811
  107,437,042
  107,437,206
  107,437,516
  107,437,960
  107,439,353
  107,441,201
  107,441,206
  107,441,228
  107,441,910
  107,442,393
  107,442,467
  107,446,064
  107,446,174
  107,447,436
  107,448,712
  107,449,071
  107,449,095
  107,449,269
  107,450,128
  107,450,471
  107,451,749
  107,451,918
  107,452,055
  107,452,222
  107,452,563
  107,453,876
  107,455,421
  107,456,558
  107,456,854
  107,457,951
  107,458,288
  107,458,741
  107,458,743
  107,458,744
  107,459,079
  107,460,121
  107,460,252
  107,461,823
  107,462,773
  107,463,129
  107,463,688
  107,464,071
  107,465,309
  107,465,614
  107,466,294
  107,467,445
  107,467,782
  107,469,008
  107,470,139
  107,470,204
  107,470,643
  107,470,720
  107,471,212
  107,473,861
  107,473,918
  107,474,151
  107,474,651
  107,475,544
  107,476,137
  107,476,721
  107,476,796
  107,477,750
  107,477,825
  107,477,986
  107,478,622
  107,478,867
  107,480,315
  107,480,378
  107,480,818
  107,480,991
  107,481,374
  107,481,438
  107,481,475
  107,481,482
  107,481,826
  107,482,019
  107,482,020
  107,482,548
  107,483,183
  107,486,975
  107,487,510
  107,487,772
  107,487,934
  107,488,096
  107,488,663
  107,490,520
  107,491,480
  107,491,927
  107,492,266
  107,493,803
  107,493,886
  107,496,601
  107,496,665
  107,496,878
  107,498,021
  107,502,166
  107,503,011
  107,503,483
  107,503,661
  107,505,358
  107,506,584
  107,507,097
  107,507,660
  107,507,874
  107,508,549
  107,508,768
  107,509,258
  107,509,543
  107,509,748
  107,509,795
  107,509,950
  107,510,569
  107,511,532
  107,511,738
  107,512,562
  107,512,580
  107,512,596
  107,512,598
  107,513,343
  107,513,630
  107,513,652
  107,514,214
  107,514,872
  107,515,282
  107,515,825
  107,516,490
  107,516,554
  107,517,108
  107,517,744
  107,519,512
  107,521,713
  107,521,993
  107,522,118
  107,522,670
  107,522,676
  107,522,715
  107,522,900
  107,522,924
  107,523,281
  107,524,500
  107,525,589
  107,526,142
  107,526,146
  107,527,599
  107,527,657
  107,528,773
  107,529,071
  107,529,814
  107,530,972
  107,531,490
  107,531,982
  107,532,800
  107,534,933
  107,535,055
  107,535,250
  107,535,755
  107,538,241
  107,538,242
  107,538,908
  107,539,363
  107,540,908
  107,541,947
  107,542,071
  107,542,170
  107,542,333
  107,542,663
  107,542,732
  107,544,339
  107,544,593
  107,545,199
  107,545,244
  107,549,934
  107,550,468
  107,552,611
  107,553,874
  107,553,938
  107,554,374
  107,554,484
  107,555,898
  107,556,810
  107,557,760
  107,560,169
  107,560,336
  107,560,444
  107,561,169
  107,561,190
  107,563,517
  107,563,723
  107,564,281
  107,564,986
  107,565,307
  107,567,138
  107,568,263
  107,602,183
  107,602,208
  107,602,394
C/T
A/G
C
T/G
C
G/A
2/-
9
-
G/A
A/G
T/C
-
C
C/G
A/G
4
G
C/T
G
T
C/T
T/A
G
C/A
-
T/G
G
C/T
A
A/G
G/C
G/A
G/T
C
G/T
G/A
C/T
G
G
A/G
A
T/C
C/T
T/C
G/A
A/G
6/-
2
C/T
G/A
T/G
4/-
G/T
C/T
C/3
G/3
2/-
T
A/T
G/C
G
T
C/T
C/T
C/A
T/G
G
G
A
G/2
G/T
T/-
G
A
C
G/A
T
T/A
C/A
G/T
T/-
T/2
T/A
A
2
C/T
G
T/C
C/T
T/C
T/A
C/A
A/T
A/C
C/T
G
C
T/2
T/G
2/-
C/T
C/T
G
C
G
C/G
A/G
T
C/T
T/C
C/T
T
C
17/-
T/-
A
C
A/C
G
T/G
C
C/A
A/G
A
C/T
T
C
G
T/2
5/-
C
2
G
G/A
A/G
G
A
A/C
A/T
T/7
G/A
G/A
G/A
T/C
G/C
G/A
A
5/-
5/-
C
C
C/T
T/G
A
C/T
C/A
T/G
G/A
C/A
C/T
G/A
G
G/2
T/5
T/13
A/2
A/8
T/A
C/A
C/T
T/C
A/T
T/G
T
A/G
A/13
4/-
T/C
G
A
C/T
C/T
-
T/C
G/A
3/-
C/2
T/-
C/T
-
-
-
A/G
C
A/G
T/C
A/-
G
G/A
C/T
T/4
G
G
A/G
C/T
C/-
A/G
C/T
2
G/T
T/C
G
G
C
2
T/C
T/3
C/A
A/2
7/-
G/A
G/A
T/2
A/2
G/C
G/C
G/-
A/G
-
G/A
-
G/2
T/C
C/A
A/T
G/A
A/G
C
C
C/T
G/3
G/A
C
G/A
A/T