Zmat1 (zinc finger, matrin-type 1) - Rat Genome Database

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Gene: Zmat1 (zinc finger, matrin-type 1) Rattus norvegicus
Analyze
Symbol: Zmat1
Name: zinc finger, matrin-type 1
RGD ID: 1565344
Description: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZMAT1 (zinc finger matrin-type 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC308654; RGD1565344; similar to zinc finger, matrin type 1; zinc finger matrin-type protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X102,461,621 - 102,520,818 (-)NCBIGRCr8
mRatBN7.2X98,168,388 - 98,199,415 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX98,168,456 - 98,199,733 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X105,804,603 - 105,836,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX105,805,902 - 105,835,327 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X105,693,733 - 105,725,316 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X122,455,355 - 122,484,808 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX99,207,306 - 99,239,113 (-)NCBICelera
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zmat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X102,461,621 - 102,520,818 (-)NCBIGRCr8
mRatBN7.2X98,168,388 - 98,199,415 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX98,168,456 - 98,199,733 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X105,804,603 - 105,836,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX105,805,902 - 105,835,327 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X105,693,733 - 105,725,316 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X122,455,355 - 122,484,808 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX99,207,306 - 99,239,113 (-)NCBICelera
Cytogenetic MapXq32NCBI
ZMAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X101,882,290 - 101,932,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX101,882,288 - 101,932,031 (-)EnsemblGRCh38hg38GRCh38
GRCh37X101,137,262 - 101,187,000 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X101,023,918 - 101,073,656 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X100,943,407 - 100,951,338NCBI
CeleraX101,657,865 - 101,707,597 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX90,944,876 - 90,981,277 (-)NCBIHuRef
CHM1_1X101,031,237 - 101,080,962 (-)NCBICHM1_1
T2T-CHM13v2.0X100,326,914 - 100,376,656 (-)NCBIT2T-CHM13v2.0
Zmat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,872,121 - 133,909,958 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,872,121 - 133,909,958 (-)EnsemblGRCm39 Ensembl
GRCm38X134,971,372 - 135,009,209 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,971,372 - 135,009,209 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X131,505,911 - 131,543,748 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X130,319,141 - 130,324,992 (-)NCBIMGSCv36mm8
CeleraX117,858,095 - 117,895,903 (-)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX56.35NCBI
Zmat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555038,031,434 - 8,077,534 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555038,034,433 - 8,077,301 (-)NCBIChiLan1.0ChiLan1.0
ZMAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X101,476,567 - 101,526,965 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X101,480,172 - 101,530,577 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X91,079,459 - 91,129,351 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X101,208,237 - 101,230,222 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX101,209,383 - 101,244,523 (-)Ensemblpanpan1.1panPan2
ZMAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X75,777,792 - 75,809,220 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX75,778,991 - 75,838,139 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX62,137,157 - 62,168,591 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X77,193,276 - 77,211,945 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX77,193,282 - 77,212,018 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X74,763,347 - 74,794,776 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X76,422,920 - 76,454,373 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X76,185,664 - 76,217,335 (-)NCBIUU_Cfam_GSD_1.0
Zmat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X62,370,748 - 62,614,709 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936813860,426 - 906,772 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936813860,397 - 906,448 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX83,396,333 - 83,432,546 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X83,396,325 - 83,559,247 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X97,258,138 - 97,294,370 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZMAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X90,163,096 - 90,211,443 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX90,163,126 - 90,211,398 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606515,112,780 - 15,161,145 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624902354,669 - 406,873 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624902354,436 - 408,976 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zmat1
80 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:79
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000042714
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 5 66 29 30 3
Low 3 37 52 41 19 41 8 10 8 6 11 8 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_002727625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002730284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006257246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000042714   ⟹   ENSRNOP00000050228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX98,168,456 - 98,199,349 (-)Ensembl
Rnor_6.0 EnsemblX105,805,902 - 105,835,327 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103682   ⟹   ENSRNOP00000081728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX98,168,456 - 98,199,349 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111310   ⟹   ENSRNOP00000092950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX98,168,456 - 98,199,733 (-)Ensembl
RefSeq Acc Id: XM_002730284   ⟹   XP_002730330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,494,111 (-)NCBI
mRatBN7.2X98,168,388 - 98,199,415 (-)NCBI
Rnor_6.0X105,804,603 - 105,836,410 (-)NCBI
Rnor_5.0X105,693,733 - 105,725,316 (-)NCBI
RGSC_v3.4X122,455,355 - 122,484,808 (-)RGD
Sequence:
RefSeq Acc Id: XM_008773457   ⟹   XP_008771679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,494,106 (-)NCBI
mRatBN7.2X98,168,388 - 98,199,415 (-)NCBI
Rnor_6.0X105,804,603 - 105,833,316 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602354   ⟹   XP_017457843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,494,106 (-)NCBI
mRatBN7.2X98,168,388 - 98,199,413 (-)NCBI
Rnor_6.0X105,804,603 - 105,833,316 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039100603   ⟹   XP_038956531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,494,106 (-)NCBI
mRatBN7.2X98,168,388 - 98,199,415 (-)NCBI
RefSeq Acc Id: XM_039100604   ⟹   XP_038956532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,494,106 (-)NCBI
mRatBN7.2X98,168,388 - 98,199,415 (-)NCBI
RefSeq Acc Id: XM_039100608   ⟹   XP_038956536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,494,106 (-)NCBI
mRatBN7.2X98,168,388 - 98,191,205 (-)NCBI
RefSeq Acc Id: XM_039100609   ⟹   XP_038956537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,494,106 (-)NCBI
mRatBN7.2X98,168,388 - 98,199,413 (-)NCBI
RefSeq Acc Id: XM_063280391   ⟹   XP_063136461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,510,498 (-)NCBI
RefSeq Acc Id: XM_063280392   ⟹   XP_063136462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,494,106 (-)NCBI
RefSeq Acc Id: XM_063280393   ⟹   XP_063136463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,461,621 - 102,520,818 (-)NCBI
RefSeq Acc Id: XP_002730330   ⟸   XM_002730284
- Peptide Label: isoform X3
- UniProtKB: D3ZGI1 (UniProtKB/TrEMBL),   A6IVI3 (UniProtKB/TrEMBL),   A0A8I6G6E3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771679   ⟸   XM_008773457
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GK13 (UniProtKB/TrEMBL),   A0A8I6G6E3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457843   ⟸   XM_017602354
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G6E3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000050228   ⟸   ENSRNOT00000042714
RefSeq Acc Id: XP_038956532   ⟸   XM_039100604
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G6E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956531   ⟸   XM_039100603
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G6E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956537   ⟸   XM_039100609
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G6E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956536   ⟸   XM_039100608
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G6E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000092950   ⟸   ENSRNOT00000111310
RefSeq Acc Id: ENSRNOP00000081728   ⟸   ENSRNOT00000103682
RefSeq Acc Id: XP_063136463   ⟸   XM_063280393
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063136461   ⟸   XM_063280391
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063136462   ⟸   XM_063280392
- Peptide Label: isoform X2
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZGI1-F1-model_v2 AlphaFold D3ZGI1 1-645 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565344 AgrOrtholog
BioCyc Gene G2FUF-1663 BioCyc
Ensembl Genes ENSRNOG00000024135 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042714.4 UniProtKB/TrEMBL
  ENSRNOT00000103682.1 UniProtKB/TrEMBL
  ENSRNOT00000111310.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
  Znf_U1 UniProtKB/TrEMBL
KEGG Report rno:308654 UniProtKB/TrEMBL
NCBI Gene 308654 ENTREZGENE
PANTHER LYSINE-RICH COILED-COIL PROTEIN 1 UniProtKB/TrEMBL
  LYSINE-RICH COILED-COIL PROTEIN 1 UniProtKB/TrEMBL
Pfam zf-met UniProtKB/TrEMBL
PhenoGen Zmat1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024135 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6G6E3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GK13 ENTREZGENE, UniProtKB/TrEMBL
  A6IVI3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZGI1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-12 Zmat1  zinc finger, matrin-type 1  RGD1565344  similar to zinc finger, matrin type 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565344  similar to zinc finger, matrin type 1   RGD1565344_predicted  similar to zinc finger, matrin type 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565344_predicted  similar to zinc finger, matrin type 1 (predicted)  LOC308654  similar to zinc finger, matrin type 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC308654  similar to zinc finger, matrin type 1      Symbol and Name status set to provisional 70820 PROVISIONAL