Rbpms (RNA binding protein, mRNA processing factor) - Rat Genome Database

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Gene: Rbpms (RNA binding protein, mRNA processing factor) Rattus norvegicus
Analyze
Symbol: Rbpms
Name: RNA binding protein, mRNA processing factor
RGD ID: 1561067
Description: Enables identical protein binding activity; molecular adaptor activity; and pre-mRNA binding activity. Involved in protein-containing complex assembly and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasmic stress granule; cytosol; and nucleoplasm. Orthologous to human RBPMS (RNA binding protein, mRNA processing factor); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC498642; RGD1561067; RNA binding protein gene with multiple splicing; RNA binding protein with multiple splicing; RNA-binding protein with multiple splicing; similar to RNA binding protein gene with multiple splicing
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,942,159 - 65,098,504 (+)NCBIGRCr8
mRatBN7.21658,239,370 - 58,395,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,239,474 - 58,395,426 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,579,457 - 63,713,962 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,993,105 - 67,127,638 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,213,707 - 62,348,200 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,954,569 - 62,109,998 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,954,590 - 62,096,497 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,618,879 - 61,774,268 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41662,009,626 - 62,163,466 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1656,277,529 - 56,412,446 (+)NCBICelera
Cytogenetic Map16q12.2-q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aconitine  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amiodarone  (ISO)
antimony(0)  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (EXP)
Benoxacor  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
calyculin a  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP,ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
fonofos  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
indometacin  (ISO)
isotretinoin  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methylformamide  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
Soman  (EXP)
tamoxifen  (ISO)
terbufos  (ISO)
tetrachloromethane  (EXP,ISO)
thiabendazole  (EXP)
topotecan  (EXP)
tremolite asbestos  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators. Yang Y, etal., Nucleic Acids Res. 2023 Oct 13;51(18):9961-9982. doi: 10.1093/nar/gkad652.
Additional References at PubMed
PMID:17099224   PMID:19737887   PMID:22658674   PMID:26347403   PMID:31283468  


Genomics

Comparative Map Data
Rbpms
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,942,159 - 65,098,504 (+)NCBIGRCr8
mRatBN7.21658,239,370 - 58,395,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,239,474 - 58,395,426 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,579,457 - 63,713,962 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,993,105 - 67,127,638 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,213,707 - 62,348,200 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,954,569 - 62,109,998 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,954,590 - 62,096,497 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,618,879 - 61,774,268 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41662,009,626 - 62,163,466 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1656,277,529 - 56,412,446 (+)NCBICelera
Cytogenetic Map16q12.2-q12.3NCBI
RBPMS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,384,541 - 30,572,256 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,384,511 - 30,572,256 (+)EnsemblGRCh38hg38GRCh38
GRCh37830,242,057 - 30,429,773 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,361,486 - 30,549,276 (+)NCBINCBI36Build 36hg18NCBI36
Build 34830,361,485 - 30,549,276NCBI
Celera829,200,833 - 29,388,215 (+)NCBICelera
Cytogenetic Map8p12NCBI
HuRef828,786,611 - 28,974,229 (+)NCBIHuRef
CHM1_1830,444,486 - 30,631,917 (+)NCBICHM1_1
T2T-CHM13v2.0830,663,428 - 30,851,701 (+)NCBIT2T-CHM13v2.0
Rbpms
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,272,671 - 34,419,925 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,272,671 - 34,419,891 (-)EnsemblGRCm39 Ensembl
GRCm38833,782,643 - 33,929,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl833,782,643 - 33,929,863 (-)EnsemblGRCm38mm10GRCm38
MGSCv37834,893,116 - 35,040,313 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36835,249,999 - 35,395,753 (-)NCBIMGSCv36mm8
Celera836,420,353 - 36,511,505 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.85NCBI
Rbpms
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554636,901,263 - 6,988,870 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554636,817,570 - 6,973,393 (+)NCBIChiLan1.0ChiLan1.0
RBPMS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2748,944,932 - 49,134,955 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1824,660,519 - 24,850,850 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0829,685,311 - 29,875,614 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1826,876,710 - 27,065,387 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl826,965,830 - 27,065,387 (+)Ensemblpanpan1.1panPan2
RBPMS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11633,788,675 - 33,961,595 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1633,788,781 - 33,960,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1634,250,794 - 34,424,085 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01635,817,904 - 35,991,250 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11633,916,132 - 34,089,651 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,486,116 - 34,659,162 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,606,907 - 34,780,115 (-)NCBIUU_Cfam_GSD_1.0
Rbpms
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494356,959,279 - 57,127,286 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936792236,503 - 404,510 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936792236,509 - 404,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBPMS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,539,238 - 54,725,583 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11554,538,583 - 54,725,605 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21561,933,646 - 62,143,596 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBPMS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,496,583 - 28,684,487 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,496,075 - 28,659,907 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605213,423,707 - 13,611,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbpms
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248397,068,761 - 7,242,159 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248397,068,656 - 7,243,627 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbpms
763 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:281
Count of miRNA genes:190
Interacting mature miRNAs:213
Transcripts:ENSRNOT00000017883, ENSRNOT00000046138, ENSRNOT00000068011
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat

Markers in Region
RH144171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,376,634 - 58,376,810 (+)MAPPERmRatBN7.2
Rnor_6.01662,091,207 - 62,091,382NCBIRnor6.0
Rnor_5.01661,755,477 - 61,755,652UniSTSRnor5.0
RGSC_v3.41662,145,819 - 62,145,994UniSTSRGSC3.4
Celera1656,414,074 - 56,414,249UniSTS
RH 3.4 Map16541.7UniSTS
Cytogenetic Map16q12.3UniSTS
AI011370  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,388,631 - 58,388,876 (+)MAPPERmRatBN7.2
Rnor_6.01662,103,206 - 62,103,450NCBIRnor6.0
Rnor_5.01661,767,476 - 61,767,720UniSTSRnor5.0
RGSC_v3.41662,157,818 - 62,158,062UniSTSRGSC3.4
Celera1656,426,075 - 56,426,319UniSTS
RH 3.4 Map16542.0UniSTS
Cytogenetic Map16q12.3UniSTS
AI231834  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,395,106 - 58,395,304 (+)MAPPERmRatBN7.2
Rnor_6.01662,109,681 - 62,109,878NCBIRnor6.0
Rnor_5.01661,773,951 - 61,774,148UniSTSRnor5.0
RGSC_v3.41662,164,293 - 62,164,490UniSTSRGSC3.4
Celera1656,432,550 - 56,432,747UniSTS
RH 3.4 Map16560.2UniSTS
Cytogenetic Map16q12.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 41 31 6 31 6 35 39 11
Low 16 10 13 10 8 11 68 2 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017883   ⟹   ENSRNOP00000017883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,239,474 - 58,375,007 (+)Ensembl
Rnor_6.0 Ensembl1661,954,590 - 62,089,579 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000068011   ⟹   ENSRNOP00000063629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,239,474 - 58,394,005 (+)Ensembl
Rnor_6.0 Ensembl1661,954,809 - 62,096,497 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113205   ⟹   ENSRNOP00000080717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,239,474 - 58,394,001 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116989   ⟹   ENSRNOP00000088378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,239,874 - 58,394,001 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119714   ⟹   ENSRNOP00000081138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,239,474 - 58,395,426 (+)Ensembl
RefSeq Acc Id: NM_001271244   ⟹   NP_001258173
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,609 - 65,078,085 (+)NCBI
mRatBN7.21658,239,474 - 58,375,007 (+)NCBI
Rnor_6.01661,954,590 - 62,089,579 (+)NCBI
Rnor_5.01661,618,879 - 61,774,268 (+)NCBI
Celera1656,277,529 - 56,412,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253238   ⟹   XP_006253300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,098,504 (+)NCBI
mRatBN7.21658,239,370 - 58,395,424 (+)NCBI
Rnor_6.01661,954,570 - 62,109,998 (+)NCBI
Rnor_5.01661,618,879 - 61,774,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253240   ⟹   XP_006253302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,097,090 (+)NCBI
mRatBN7.21658,239,405 - 58,394,010 (+)NCBI
Rnor_6.01661,954,574 - 62,108,582 (+)NCBI
Rnor_5.01661,618,879 - 61,774,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253241   ⟹   XP_006253303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,098,504 (+)NCBI
mRatBN7.21658,239,375 - 58,394,010 (+)NCBI
Rnor_6.01661,954,571 - 62,108,579 (+)NCBI
Rnor_5.01661,618,879 - 61,774,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063275646   ⟹   XP_063131716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,092,128 (+)NCBI
RefSeq Acc Id: XR_010058306
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,097,090 (+)NCBI
RefSeq Acc Id: XR_010058307
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,942,159 - 65,097,090 (+)NCBI
RefSeq Acc Id: XR_010058308
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,042,679 - 65,097,090 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001258173   ⟸   NM_001271244
- UniProtKB: F2Z3S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253300   ⟸   XM_006253238
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006253303   ⟸   XM_006253241
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006253302   ⟸   XM_006253240
- Peptide Label: isoform X2
- UniProtKB: F1M9Y9 (UniProtKB/Swiss-Prot),   A0A8I5ZR01 (UniProtKB/Swiss-Prot),   A0A8I6G705 (UniProtKB/TrEMBL),   A0A8I6AAP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000063629   ⟸   ENSRNOT00000068011
RefSeq Acc Id: ENSRNOP00000017883   ⟸   ENSRNOT00000017883
RefSeq Acc Id: ENSRNOP00000081138   ⟸   ENSRNOT00000119714
RefSeq Acc Id: ENSRNOP00000080717   ⟸   ENSRNOT00000113205
RefSeq Acc Id: ENSRNOP00000088378   ⟸   ENSRNOT00000116989
RefSeq Acc Id: XP_063131716   ⟸   XM_063275646
- Peptide Label: isoform X2
- UniProtKB: F1M9Y9 (UniProtKB/Swiss-Prot),   A0A8I6G705 (UniProtKB/Swiss-Prot),   A0A8I5ZR01 (UniProtKB/Swiss-Prot)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M9Y9-F1-model_v2 AlphaFold F1M9Y9 1-220 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700140
Promoter ID:EPDNEW_R10664
Type:multiple initiation site
Name:Rbpms_1
Description:RNA binding protein with multiple splicing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01661,954,627 - 61,954,687EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561067 AgrOrtholog
BioCyc Gene G2FUF-11127 BioCyc
Ensembl Genes ENSRNOG00000013328 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055012300 UniProtKB/Swiss-Prot
  ENSRNOG00060011971 UniProtKB/Swiss-Prot
  ENSRNOG00065002832 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000017883 ENTREZGENE
  ENSRNOT00000068011.5 UniProtKB/TrEMBL
  ENSRNOT00000113205.1 UniProtKB/Swiss-Prot
  ENSRNOT00000116989.1 UniProtKB/TrEMBL
  ENSRNOT00055020937 UniProtKB/Swiss-Prot
  ENSRNOT00060020322 UniProtKB/Swiss-Prot
  ENSRNOT00065003920 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:498642 UniProtKB/Swiss-Prot
NCBI Gene 498642 ENTREZGENE
PANTHER RNA-BINDING PROTEIN WITH MULTIPLE SPLICING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbpms PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013328 RatGTEx
  ENSRNOG00055012300 RatGTEx
  ENSRNOG00060011971 RatGTEx
  ENSRNOG00065002832 RatGTEx
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RNA-binding domain, RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZR01 ENTREZGENE
  A0A8I6AAP9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G705 ENTREZGENE
  A6IVR6_RAT UniProtKB/TrEMBL
  F1M9Y9 ENTREZGENE
  F2Z3S5 ENTREZGENE, UniProtKB/TrEMBL
  RBPMS_RAT UniProtKB/Swiss-Prot
UniProt Secondary A0A8I5ZR01 UniProtKB/Swiss-Prot
  F1M9Y9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-01-15 Rbpms  RNA binding protein, mRNA processing factor  Rbpms  RNA binding protein with multiple splicing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561067  similar to RNA binding protein gene with multiple splicing   RGD1561067_predicted  similar to RNA binding protein gene with multiple splicing (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561067_predicted  similar to RNA binding protein gene with multiple splicing (predicted)  LOC498642  similar to RNA binding protein gene with multiple splicing  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498642  similar to RNA binding protein gene with multiple splicing      Symbol and Name status set to provisional 70820 PROVISIONAL