Stmn2 (stathmin 2) - Rat Genome Database

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Gene: Stmn2 (stathmin 2) Rattus norvegicus
Analyze
Symbol: Stmn2
Name: stathmin 2
RGD ID: 68947
Description: Predicted to enable calcium-dependent protein binding activity and tubulin binding activity. Predicted to be involved in several processes, including cellular response to nerve growth factor stimulus; regulation of microtubule polymerization or depolymerization; and regulation of neuron projection development. Located in growth cone and vesicle. Orthologous to human STMN2 (stathmin 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC105372; SCG10; Scgn10; stathmin-2; stathmin-like 2; superior cervical ganglion-10 protein; superiorcervical ganglia neural specific 10; superiorcervical ganglia, neural specific 10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8295,112,017 - 95,159,642 (-)NCBIGRCr8
mRatBN7.2293,204,690 - 93,252,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl293,204,692 - 93,252,011 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx299,728,967 - 99,776,344 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0297,849,998 - 97,897,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0292,906,867 - 92,954,252 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0295,424,251 - 95,471,900 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl295,424,251 - 95,472,115 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02115,167,504 - 115,215,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4295,284,903 - 95,332,686 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1295,229,866 - 95,277,648 (-)NCBI
Celera288,774,309 - 88,821,687 (-)NCBICelera
Cytogenetic Map2q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arotinoid acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
Butylparaben  (EXP)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CHIR 99021  (ISO)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
cortisol  (ISO)
crocidolite asbestos  (ISO)
DDE  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dimethylarsinic acid  (EXP)
doramapimod  (EXP)
dorsomorphin  (ISO)
enzacamene  (EXP)
epoxiconazole  (EXP)
ethanol  (ISO)
etoposide  (ISO)
furan  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
ketoconazole  (EXP)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
linuron  (EXP)
methylazoxymethanol  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
nitrofen  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paraquat  (EXP)
pirinixic acid  (ISO)
prochloraz  (EXP)
procymidone  (EXP)
progesterone  (ISO)
rotenone  (ISO)
sarin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
thalidomide  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
XAV939  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO,ISS)
endosome  (IEA)
Golgi apparatus  (IEA)
growth cone  (IBA,IDA,IEA,ISO)
lamellipodium  (IEA,ISO,ISS)
membrane  (IEA)
neuron projection  (IBA,ISO,ISS)
neuronal cell body  (IEA,ISO,ISS)
perinuclear region of cytoplasm  (IEA,ISO)
vesicle  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The stathmin phosphoprotein family: intracellular localization and effects on the microtubule network. Gavet O, etal., J Cell Sci 1998 Nov;111 ( Pt 22):3333-46.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. TRPC5 is a regulator of hippocampal neurite length and growth cone morphology. Greka A, etal., Nat Neurosci 2003 Aug;6(8):837-45.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. The interaction of RGSZ1 with SCG10 attenuates the ability of SCG10 to promote microtubule disassembly. Nixon AB, etal., J Biol Chem 2002 May 17;277(20):18127-33. Epub 2002 Mar 6.
8. Differential, regional, and cellular expression of the stathmin family transcripts in the adult rat brain. Ozon S, etal., J Neurosci Res 1999 Jun 1;56(5):553-64.
9. Identification of upregulated SCG10 mRNA expression associated with late-phase long-term potentiation in the rat hippocampal Schaffer-CA1 pathway in vivo. Peng H, etal., J Neurosci 2003 Jul 23;23(16):6617-26.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. JNK1 phosphorylation of SCG10 determines microtubule dynamics and axodendritic length. Tararuk T, etal., J Cell Biol. 2006 Apr 24;173(2):265-77. Epub 2006 Apr 17.
14. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:3272176   PMID:12477932   PMID:14741408   PMID:15200951   PMID:15489334   PMID:15581637   PMID:16838365   PMID:18422486   PMID:18452648   PMID:18996843   PMID:19959466   PMID:20106964  
PMID:20621975   PMID:20802173   PMID:21215777   PMID:21471001  


Genomics

Comparative Map Data
Stmn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8295,112,017 - 95,159,642 (-)NCBIGRCr8
mRatBN7.2293,204,690 - 93,252,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl293,204,692 - 93,252,011 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx299,728,967 - 99,776,344 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0297,849,998 - 97,897,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0292,906,867 - 92,954,252 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0295,424,251 - 95,471,900 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl295,424,251 - 95,472,115 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02115,167,504 - 115,215,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4295,284,903 - 95,332,686 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1295,229,866 - 95,277,648 (-)NCBI
Celera288,774,309 - 88,821,687 (-)NCBICelera
Cytogenetic Map2q23NCBI
STMN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38879,611,117 - 79,666,158 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl879,611,117 - 79,666,158 (+)EnsemblGRCh38hg38GRCh38
GRCh37880,523,352 - 80,578,393 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36880,685,935 - 80,739,792 (+)NCBINCBI36Build 36hg18NCBI36
Build 34880,685,934 - 80,739,779NCBI
Celera876,527,590 - 76,581,458 (+)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef876,012,743 - 76,068,118 (+)NCBIHuRef
CHM1_1880,575,276 - 80,630,679 (+)NCBICHM1_1
T2T-CHM13v2.0880,042,462 - 80,097,513 (+)NCBIT2T-CHM13v2.0
Stmn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3938,574,587 - 8,626,664 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl38,574,420 - 8,626,666 (+)EnsemblGRCm39 Ensembl
GRCm3838,509,527 - 8,561,604 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl38,509,360 - 8,561,606 (+)EnsemblGRCm38mm10GRCm38
MGSCv3738,509,527 - 8,561,604 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3638,492,600 - 8,544,677 (+)NCBIMGSCv36mm8
Celera38,514,599 - 8,566,747 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map32.15NCBI
Stmn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554441,585,042 - 1,646,812 (-)NCBIChiLan1.0ChiLan1.0
STMN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2795,350,636 - 95,406,105 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1870,980,769 - 71,036,051 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0876,137,827 - 76,193,112 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1877,768,471 - 77,823,909 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl877,765,243 - 77,827,611 (+)Ensemblpanpan1.1panPan2
STMN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12927,055,891 - 27,105,695 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2927,055,900 - 27,104,501 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2927,329,341 - 27,379,157 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02927,179,142 - 27,228,977 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2927,179,152 - 27,228,973 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12927,224,785 - 27,274,552 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02927,263,476 - 27,313,267 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02927,620,016 - 27,669,831 (+)NCBIUU_Cfam_GSD_1.0
Stmn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530351,992,013 - 52,044,650 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936871519,611 - 572,460 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936871519,611 - 572,429 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STMN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl456,952,978 - 57,006,462 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1456,952,968 - 57,006,744 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2462,173,165 - 62,226,945 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STMN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1875,071,514 - 75,127,605 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl875,071,638 - 75,128,187 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603966,074,674 - 66,130,665 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stmn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474411,572,745 - 11,630,819 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474411,573,707 - 11,630,570 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stmn2
263 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:333
Count of miRNA genes:205
Interacting mature miRNAs:243
Transcripts:ENSRNOT00000015720
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)27478666494359546Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)27478666494359546Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)276539322102785628Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)276539322102785628Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat

Markers in Region
D8S1385E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2293,204,790 - 93,204,900 (+)MAPPERmRatBN7.2
Rnor_6.0295,424,352 - 95,424,461NCBIRnor6.0
Rnor_5.02115,167,605 - 115,167,714UniSTSRnor5.0
RGSC_v3.4295,285,004 - 95,285,113UniSTSRGSC3.4
Celera288,774,410 - 88,774,519UniSTS
Cytogenetic Map2q23UniSTS
AI454126  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2293,204,851 - 93,205,039 (+)MAPPERmRatBN7.2
Rnor_6.0295,424,413 - 95,424,600NCBIRnor6.0
Rnor_5.02115,167,666 - 115,167,853UniSTSRnor5.0
RGSC_v3.4295,285,065 - 95,285,252UniSTSRGSC3.4
Celera288,774,471 - 88,774,658UniSTS
RH 3.4 Map2589.3UniSTS
Cytogenetic Map2q23UniSTS
D8S1388E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2293,204,719 - 93,204,809 (+)MAPPERmRatBN7.2
Rnor_6.0295,424,281 - 95,424,370NCBIRnor6.0
Rnor_5.02115,167,534 - 115,167,623UniSTSRnor5.0
RGSC_v3.4295,284,933 - 95,285,022UniSTSRGSC3.4
Celera288,774,339 - 88,774,428UniSTS
Cytogenetic Map2q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 37
Medium 1 12 14 14 2 14 37 12
Low 2 16 20 7 14 7 7 10 17 22 11 7
Below cutoff 14 18 15 3 15 1 1 18 6 1

Sequence


RefSeq Acc Id: ENSRNOT00000015720   ⟹   ENSRNOP00000015720
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl293,204,692 - 93,252,011 (-)Ensembl
Rnor_6.0 Ensembl295,424,251 - 95,472,115 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095634   ⟹   ENSRNOP00000083052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl293,204,692 - 93,223,840 (-)Ensembl
RefSeq Acc Id: NM_053440   ⟹   NP_445892
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8295,112,017 - 95,159,335 (-)NCBI
mRatBN7.2293,204,690 - 93,252,011 (-)NCBI
Rnor_6.0295,424,251 - 95,471,900 (-)NCBI
Rnor_5.02115,167,504 - 115,215,213 (-)NCBI
RGSC_v3.4295,284,903 - 95,332,686 (-)RGD
Celera288,774,309 - 88,821,687 (-)RGD
Sequence:
RefSeq Acc Id: XM_063282645   ⟹   XP_063138715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8295,112,017 - 95,159,642 (-)NCBI
RefSeq Acc Id: NP_445892   ⟸   NM_053440
- UniProtKB: Q9ERH2 (UniProtKB/Swiss-Prot),   P21818 (UniProtKB/Swiss-Prot),   A6IH74 (UniProtKB/TrEMBL),   A6IH75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015720   ⟸   ENSRNOT00000015720
RefSeq Acc Id: ENSRNOP00000083052   ⟸   ENSRNOT00000095634
RefSeq Acc Id: XP_063138715   ⟸   XM_063282645
- Peptide Label: isoform X1
Protein Domains
SLD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P21818-F1-model_v2 AlphaFold P21818 1-179 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691243
Promoter ID:EPDNEW_R1767
Type:multiple initiation site
Name:Stmn2_1
Description:stathmin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0295,471,943 - 95,472,003EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68947 AgrOrtholog
BioCyc Gene G2FUF-53712 BioCyc
Ensembl Genes ENSRNOG00000011705 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055001898 UniProtKB/Swiss-Prot
  ENSRNOG00060001848 UniProtKB/Swiss-Prot
  ENSRNOG00065020105 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015720 ENTREZGENE
  ENSRNOT00000015720.7 UniProtKB/Swiss-Prot
  ENSRNOT00000095634.1 UniProtKB/TrEMBL
  ENSRNOT00055003059 UniProtKB/Swiss-Prot
  ENSRNOT00060002844 UniProtKB/Swiss-Prot
  ENSRNOT00065033898 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.280.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7313867 IMAGE-MGC_LOAD
InterPro Stathmin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stathmin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stathmin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:84510 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105372 IMAGE-MGC_LOAD
NCBI Gene 84510 ENTREZGENE
PANTHER PTHR10104 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10104:SF18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Stathmin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stmn2 PhenoGen
PIRSF Stathmin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS STATHMIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE STATHMIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STATHMIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STATHMIN_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011705 RatGTEx
  ENSRNOG00055001898 RatGTEx
  ENSRNOG00060001848 RatGTEx
  ENSRNOG00065020105 RatGTEx
Superfamily-SCOP SSF101494 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC228640
UniProt A0A8I5ZV30_RAT UniProtKB/TrEMBL
  A6IH74 ENTREZGENE, UniProtKB/TrEMBL
  A6IH75 ENTREZGENE, UniProtKB/TrEMBL
  P21818 ENTREZGENE
  Q9ERH2 ENTREZGENE
  STMN2_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q9ERH2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-11 Stmn2  stathmin 2  Stmn2  stathmin-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2003-04-09 Stmn2  stathmin-like 2   Scgn10  superiorcervical ganglia, neural specific 10  Symbol and Name updated 629477 APPROVED
2002-06-10 Scgn10  superiorcervical ganglia, neural specific 10      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization anchored to intracellular membranes, including the Golgi apparatus, by NH2-terminal domain through palmitoylation of two cysteines 61521
gene_cellular_localization anchored to intracellular membranes, including the Golgi apparatus, by NH2-terminal domain through palmitoylation of two cysteines 61528
gene_cellular_localization localizes to the Golgi apparatus 1299171
gene_expression present in glutamatergic neurons, such as pyramidal cells of the hippocampus and granular cells of the cerebellum 61521
gene_expression present in glutamatergic neurons, such as pyramidal cells of the hippocampus and granular cells of the cerebellum 61528
gene_physical_interaction interacts in vitro with tubulin in a phosphorylation-dependent manner 61528
gene_physical_interaction interacts with RGSZ1 1299171
gene_process involved in the neuronal-like differentiation of PC12 cells 61521
gene_process involved in the neuronal-like differentiation of PC12 cells 61528
gene_process sequesters free tubulin and promotes microtubule depolymerization 61528
gene_regulation expression controlled by a neuronal restricted silencer element (NRSE) 61521
gene_regulation expression controlled by a neuronal restricted silencer element (NRSE) 61528
gene_regulation interaction with RGSZ1 effectively blocked the ability to induce microtubule disassembly 1299171
gene_regulation transcription in vivo is regulated by long-lasting synaptic activity 1299172