Mir9-2 (microRNA 9-2) - Rat Genome Database

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Gene: Mir9-2 (microRNA 9-2) Rattus norvegicus
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Symbol: Mir9-2
Name: microRNA 9-2
RGD ID: 2325602
Description: Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex.
Type: ncrna
RefSeq Status: PROVISIONAL
Previously known as: Mir9a-2; rno-mir-9-2; rno-mir-9a-2
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8215,933,292 - 15,933,378 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.2214,197,724 - 14,197,810 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx221,259,062 - 21,259,148 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0219,359,283 - 19,359,369 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0214,032,877 - 14,032,963 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0211,884,671 - 11,884,757 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0211,746,822 - 11,746,908 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera210,511,363 - 10,511,449 (+)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse:




References
Additional References at PubMed
PMID:14691248   PMID:15345052   PMID:16381832   PMID:17604727   PMID:17805466   PMID:20403161   PMID:22907787   PMID:31298359   PMID:31978557   PMID:33737500  


Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358125054526Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat


Expression

RNA-SEQ Expression

ectoderm
nervous system
sensory system
visual system
1 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_031813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: NR_031813
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8215,933,292 - 15,933,378 (+)NCBI
mRatBN7.2214,197,724 - 14,197,810 (+)NCBI
Rnor_6.0211,884,671 - 11,884,757 (+)NCBI
Rnor_5.0211,746,822 - 11,746,908 (+)NCBI
Celera210,511,363 - 10,511,449 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54969 BioCyc
miRBase MI0000840 ENTREZGENE
NCBI Gene 100313995 ENTREZGENE
PhenoGen Mir9-2 PhenoGen
RNAcentral URS00003496BE RNACentral
  URS00003FA6CD RNACentral
  URS00004208C5 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir9-2  microRNA 9-2  Mir9-2  microRNA mir-9-2  Name updated 61478 APPROVED
2010-06-02 Mir9-2  microRNA mir-9-2      Symbol and Name status set to provisional 70820 PROVISIONAL