Mir9-1 (microRNA 9-1) - Rat Genome Database

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Gene: Mir9-1 (microRNA 9-1) Mus musculus
Analyze
Symbol: Mir9-1
Name: microRNA 9-1
RGD ID: 1608353
MGI Page MGI
Description: Enables mRNA 3'-UTR binding activity and mRNA base-pairing post-transcriptional repressor activity. Acts upstream of or within several processes, including cellular hyperosmotic salinity response; cellular response to ethanol; and neuron differentiation. Predicted to be part of RISC complex. Is expressed in several structures, including central nervous system; eye; gonad; hemolymphoid system gland; and liver. Orthologous to human MIR9-1 (microRNA 9-1).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Mi; mir-9-1; Mirn; Mirn9; Mirn9-1; mmu-mir-9; mmu-mir-9-1
RGD Orthologs
Human
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,122,905 - 88,122,993 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,122,905 - 88,122,993 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38388,215,598 - 88,215,686 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,215,598 - 88,215,686 (+)Ensemblmm10GRCm38
MGSCv37388,019,520 - 88,019,608 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera388,255,184 - 88,255,272 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.78NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)
RISC complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:12007417   PMID:15538371   PMID:15634332   PMID:15845075   PMID:16107646   PMID:16369549   PMID:16381832   PMID:16736490   PMID:17028171   PMID:17251443   PMID:17369397   PMID:17597072  
PMID:17604727   PMID:17679093   PMID:18452032   PMID:18842901   PMID:18997113   PMID:19091803   PMID:19330006   PMID:19559694   PMID:20053268   PMID:20215419   PMID:20413612   PMID:20439489  
PMID:20457670   PMID:20554876   PMID:20616011   PMID:20947512   PMID:21037258   PMID:21267068   PMID:21288303   PMID:21346646   PMID:21368052   PMID:21822254   PMID:21826226   PMID:21957233  
PMID:21991391   PMID:22144232   PMID:22373575   PMID:22465325   PMID:22484572   PMID:22570807   PMID:22574754   PMID:22629237   PMID:22836445   PMID:22840391   PMID:22874921   PMID:23134481  
PMID:23296057   PMID:23798388   PMID:23800254   PMID:24007463   PMID:24203701   PMID:24451661   PMID:24966929   PMID:25406064   PMID:25772595   PMID:25858512   PMID:25937343   PMID:26091714  
PMID:26107383   PMID:26248136   PMID:26271009   PMID:26660116   PMID:26681446   PMID:27003684   PMID:27393149   PMID:27783951   PMID:28242024   PMID:28332716   PMID:28480796   PMID:28790189  
PMID:29470815   PMID:30006781   PMID:30144053   PMID:30264295   PMID:30468486   PMID:30552873   PMID:30578296   PMID:31080058   PMID:31169312   PMID:31174089   PMID:31210332   PMID:31571264  
PMID:31787746   PMID:32109384   PMID:32178691   PMID:32375032   PMID:32713252   PMID:32976763   PMID:32979863   PMID:33986196   PMID:34743197   PMID:34895040   PMID:34990302   PMID:36537157  
PMID:37279396   PMID:37607510   PMID:37670087   PMID:37679839   PMID:38145323   PMID:39299667  


Genomics

Comparative Map Data
Mir9-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,122,905 - 88,122,993 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,122,905 - 88,122,993 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38388,215,598 - 88,215,686 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,215,598 - 88,215,686 (+)Ensemblmm10GRCm38
MGSCv37388,019,520 - 88,019,608 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera388,255,184 - 88,255,272 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.78NCBI
MIR9-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,420,341 - 156,420,429 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,420,341 - 156,420,429 (-)Ensemblhg38GRCh38
GRCh371156,390,133 - 156,390,221 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,656,756 - 154,656,844 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1129,463,062 - 129,463,150 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,750,286 - 127,750,374 (-)NCBIHuRef
CHM1_11157,786,489 - 157,786,577 (-)NCBICHM1_1
T2T-CHM13v2.01155,558,945 - 155,559,033 (-)NCBIT2T-CHM13v2.0
MIR9-1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1493,660,422 - 93,660,510 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,543,210 - 102,543,298 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Mir9-1
9 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
10043981Cia5a_mcollagen induced arthritis QTL 5a (mouse)Not determined38717045489140094Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000199907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,122,905 - 88,122,993 (+)Ensembl
GRCm38.p6 Ensembl388,215,598 - 88,215,686 (+)Ensembl
RefSeq Acc Id: NR_029817
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,122,905 - 88,122,993 (+)NCBI
GRCm38388,215,598 - 88,215,686 (+)ENTREZGENE
MGSCv37388,019,520 - 88,019,608 (+)RGD
Celera388,255,184 - 88,255,272 (+)RGD
cM Map3 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676911 AgrOrtholog
Ensembl Genes ENSMUSG00000106493 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000199907 ENTREZGENE
MGD MGI:2676911 ENTREZGENE
miRBase MI0000720 ENTREZGENE
NCBI Gene 387133 ENTREZGENE
PhenoGen Mir9-1 PhenoGen
RNAcentral URS00003496BE RNACentral
  URS00004208C5 RNACentral
  URS000075C54E RNACentral