Vdac1-ps1 (voltage-dependent anion channel 1, pseudogene 1) - Rat Genome Database

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Gene: Vdac1-ps1 (voltage-dependent anion channel 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Vdac1-ps1
Name: voltage-dependent anion channel 1, pseudogene 1
RGD ID: 1594513
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: hypothetical LOC365635; LOC365635
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8218,926,703 - 18,927,591 (+)NCBIGRCr8
mRatBN7.2217,191,310 - 17,192,198 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0215,041,631 - 15,042,519 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0214,897,594 - 14,898,449 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4215,610,488 - 15,611,343 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera213,419,814 - 13,420,702 (+)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Vdac1-ps1
9 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54916 BioCyc
NCBI Gene 365635 ENTREZGENE
PhenoGen Vdac1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Vdac1-ps1  voltage-dependent anion channel 1, pseudogene 1  LOC365635  hypothetical LOC365635  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC365635  hypothetical LOC365635      Symbol and Name status set to provisional 70820 PROVISIONAL