Trim17 (tripartite motif-containing 17) - Rat Genome Database

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Gene: Trim17 (tripartite motif-containing 17) Rattus norvegicus
Analyze
Symbol: Trim17
Name: tripartite motif-containing 17
RGD ID: 69290
Description: Predicted to enable protein-macromolecule adaptor activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including autophagy; innate immune response; and protein autoubiquitination. Predicted to be located in lysosome. Predicted to be active in cytosol. Orthologous to human TRIM17 (tripartite motif containing 17); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E3 ubiquitin-protein ligase TRIM17; NOT NULL; ring finger protein 16; RING finger protein terf; RING-type E3 ubiquitin transferase TRIM17; Rnf16; testis RING finger protein; tripartite motif protein 17; tripartite motif-containing protein 17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,242,688 - 44,250,504 (+)NCBIGRCr8
mRatBN7.21043,743,111 - 43,750,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,740,604 - 43,750,919 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,438,512 - 48,446,393 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01047,928,854 - 47,936,735 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,432,453 - 43,440,334 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,307,007 - 45,314,823 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,297,937 - 45,314,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,059,659 - 45,071,507 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,255,305 - 45,263,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,268,911 - 45,276,911 (+)NCBI
Celera1043,009,464 - 43,017,279 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
cytosol  (IBA)
lysosome  (IEA)
nucleosome  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Molecular cloning of a novel RING finger-B box-coiled coil (RBCC) protein, terf, expressed in the testis. Ogawa S, etal., Biochem Biophys Res Commun 1998 Oct 20;251(2):515-9.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:15489334   PMID:19358823   PMID:25127057  


Genomics

Comparative Map Data
Trim17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,242,688 - 44,250,504 (+)NCBIGRCr8
mRatBN7.21043,743,111 - 43,750,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,740,604 - 43,750,919 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,438,512 - 48,446,393 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01047,928,854 - 47,936,735 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,432,453 - 43,440,334 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,307,007 - 45,314,823 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,297,937 - 45,314,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,059,659 - 45,071,507 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,255,305 - 45,263,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,268,911 - 45,276,911 (+)NCBI
Celera1043,009,464 - 43,017,279 (+)NCBICelera
Cytogenetic Map10q22NCBI
TRIM17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,407,935 - 228,416,861 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,407,935 - 228,416,861 (-)EnsemblGRCh38hg38GRCh38
GRCh371228,595,636 - 228,604,562 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,662,264 - 226,670,977 (-)NCBINCBI36Build 36hg18NCBI36
Build 341224,902,474 - 224,911,041NCBI
Celera1201,785,592 - 201,794,538 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1199,110,231 - 199,119,178 (-)NCBIHuRef
CHM1_11229,867,960 - 229,876,895 (-)NCBICHM1_1
T2T-CHM13v2.01227,596,448 - 227,605,374 (-)NCBIT2T-CHM13v2.0
Trim17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,845,511 - 58,863,923 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,845,511 - 58,863,924 (+)EnsemblGRCm39 Ensembl
GRCm381158,954,671 - 58,973,075 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,954,685 - 58,973,098 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,777,283 - 58,785,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,779,976 - 58,787,924 (+)NCBIMGSCv36mm8
Celera1163,730,120 - 63,738,057 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.38NCBI
Trim17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581107,251 - 113,907 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581107,251 - 113,907 (+)NCBIChiLan1.0ChiLan1.0
TRIM17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,189,610 - 21,199,700 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,127,909 - 21,137,356 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,808,933 - 203,818,936 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11209,020,002 - 209,029,967 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1209,020,655 - 209,029,965 (-)Ensemblpanpan1.1panPan2
TRIM17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114633,767 - 639,543 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14634,060 - 647,431 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14519,262 - 525,056 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014349,764 - 355,543 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14350,034 - 362,704 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114536,950 - 542,728 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014297,602 - 303,382 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014306,992 - 312,771 (+)NCBIUU_Cfam_GSD_1.0
Trim17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,067,968 - 87,075,205 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493713521,929 - 27,995 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493713521,149 - 28,188 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,725,189 - 51,733,042 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,726,854 - 51,732,075 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,312,737 - 1,322,058 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660551,192,242 - 1,200,972 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Trim17
34 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:27
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000003885
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103571058068663659Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103449055945579777Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000003885   ⟹   ENSRNOP00000003885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1043,740,604 - 43,750,919 (+)Ensembl
Rnor_6.0 Ensembl1045,307,007 - 45,314,822 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000066367   ⟹   ENSRNOP00000060549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1045,297,937 - 45,314,837 (+)Ensembl
RefSeq Acc Id: NM_022798   ⟹   NP_073635
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81044,242,688 - 44,250,504 (+)NCBI
mRatBN7.21043,743,111 - 43,750,929 (+)NCBI
Rnor_6.01045,307,007 - 45,314,823 (+)NCBI
Rnor_5.01045,059,659 - 45,071,507 (+)NCBI
RGSC_v3.41045,255,305 - 45,263,207 (+)RGD
Celera1043,009,464 - 43,017,279 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_073635 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD40287 (Get FASTA)   NCBI Sequence Viewer  
  AAH78819 (Get FASTA)   NCBI Sequence Viewer  
  EDM04572 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003885.3
  ENSRNOP00000060549
  ENSRNOP00055042731
  ENSRNOP00060044706
  ENSRNOP00065009688
GenBank Protein Q9WV59 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_073635   ⟸   NM_022798
- UniProtKB: Q9WV59 (UniProtKB/Swiss-Prot),   A0A0H2UI13 (UniProtKB/TrEMBL),   A6HEW7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060549   ⟸   ENSRNOT00000066367
Ensembl Acc Id: ENSRNOP00000003885   ⟸   ENSRNOT00000003885
Protein Domains
B box-type   B30.2/SPRY   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WV59-F1-model_v2 AlphaFold Q9WV59 1-477 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697228
Promoter ID:EPDNEW_R7752
Type:multiple initiation site
Name:Trim17_1
Description:tripartite motif-containing 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01045,306,986 - 45,307,046EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69290 AgrOrtholog
BioCyc Gene G2FUF-24919 BioCyc
Ensembl Genes ENSRNOG00000022983 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055029889 UniProtKB/Swiss-Prot
  ENSRNOG00060031045 UniProtKB/Swiss-Prot
  ENSRNOG00065008261 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003885.6 UniProtKB/Swiss-Prot
  ENSRNOT00000066367 UniProtKB/TrEMBL
  ENSRNOT00055051794 UniProtKB/Swiss-Prot
  ENSRNOT00060053900 UniProtKB/Swiss-Prot
  ENSRNOT00065013108 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc/RING finger domain, C3HC4 (zinc finger) UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113511 IMAGE-MGC_LOAD
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRIM/RBCC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRIM17_PRY/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf-RING_euk UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64702 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93428 IMAGE-MGC_LOAD
NCBI Gene Trim17 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRIM17 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trim17 PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022983 RatGTEx
  ENSRNOG00055029889 RatGTEx
  ENSRNOG00060031045 RatGTEx
  ENSRNOG00065008261 RatGTEx
SMART BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Concanavalin A-like lectins/glucanases UniProtKB/TrEMBL
  RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot
TIGR TC218149
UniProt A0A0H2UI13 ENTREZGENE, UniProtKB/TrEMBL
  A6HEW7 ENTREZGENE, UniProtKB/TrEMBL
  Q9WV59 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Trim17  tripartite motif-containing 17  Trim17  tripartite motif protein 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Trim17  tripartite motif protein 17      Name updated 70584 APPROVED
2002-02-27 Trim17  tripartite motif protein 17      Symbol and Name updated to reflect Human and Mouse nomenclature 70292 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains an N-terminal RING finger domain, one B-box domain, middle coiled-coil domain, and a C-terminal domain 68839
gene_expression expressed predominantly in testis 68839
gene_protein 477 amino acids 68839