Gene: C17h6orf62 (similar to human chromosome 6 open reading frame 62) Rattus norvegicus
Analyze
Symbol:
C17h6orf62 (Ensembl: C17h6orf62-ps1)
Name:
similar to human chromosome 6 open reading frame 62 (Ensembl:similar to human chromosome 6 open reading frame 62, pseudogene 1)
RGD ID:
6491729
Description:
Orthologous to human C6orf62 (chromosome 6 open reading frame 62); INTERACTS WITH bisphenol A; 2-hydroxypropanoic acid (ortholog); 5-azacytidine (ortholog).
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
LOC100911664; uncharacterized LOC100911664; uncharacterized protein C6orf62 homolog; uncharacterized protein LOC100911664
RGD Orthologs
Alliance Orthologs
More Info
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More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
C6orf62 (chromosome 6 open reading frame 62)
HGNC
EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
BC005537 (cDNA sequence BC005537)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
LOC102009721 (chromosome unknown open reading frame, human C6orf62)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
C5H6orf62 (chromosome 5 C6orf62 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
C35H6orf62 (chromosome 35 C6orf62 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
CUNH6orf62 (chromosome unknown C6orf62 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
C7H6orf62 (chromosome 7 C6orf62 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
CUNH6orf62 (chromosome unknown C6orf62 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
CUNH6orf62 (chromosome unknown C6orf62 homolog)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
PNPT1 (polyribonucleotide nucleotidyltransferase 1)
HGNC
OMA
Alliance orthologs 3
Homo sapiens (human):
C6orf62 (chromosome 6 open reading frame 62)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
BC005537 (cDNA sequence BC005537)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
zgc:111986
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
c6orf62
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Related Pseudogenes:
C17h6orf62-ps1
Latest Assembly:
mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 17 40,684,236 - 40,695,874 (-) NCBI GRCr8 mRatBN7.2 17 40,256,211 - 40,267,851 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 17 40,256,211 - 40,276,020 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 17 40,324,398 - 40,336,037 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 17 41,928,443 - 41,940,082 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 17 40,211,495 - 40,223,115 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 17 42,256,971 - 42,268,607 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 42,257,019 - 42,276,797 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 17 44,124,742 - 44,136,371 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Celera 17 39,893,497 - 39,905,141 (-) NCBI Celera Cytogenetic Map 17 p11 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
Comparative Map Data
C17h6orf62 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 17 40,684,236 - 40,695,874 (-) NCBI GRCr8 mRatBN7.2 17 40,256,211 - 40,267,851 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 17 40,256,211 - 40,276,020 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 17 40,324,398 - 40,336,037 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 17 41,928,443 - 41,940,082 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 17 40,211,495 - 40,223,115 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 17 42,256,971 - 42,268,607 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 42,257,019 - 42,276,797 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 17 44,124,742 - 44,136,371 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Celera 17 39,893,497 - 39,905,141 (-) NCBI Celera Cytogenetic Map 17 p11 NCBI
C6orf62 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 24,704,861 - 24,720,836 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 24,704,861 - 24,720,825 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 24,705,089 - 24,721,064 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 6 24,813,137 - 24,827,382 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 6 24,813,144 - 24,827,382 NCBI Celera 6 25,938,465 - 25,952,778 (-) NCBI Celera Cytogenetic Map 6 p22.3 NCBI HuRef 6 24,654,519 - 24,668,831 (-) NCBI HuRef CHM1_1 6 24,709,233 - 24,723,547 (-) NCBI CHM1_1 T2T-CHM13v2.0 6 24,575,985 - 24,592,053 (-) NCBI T2T-CHM13v2.0
BC005537 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 13 24,985,640 - 24,996,882 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 13 24,985,640 - 25,000,180 (+) Ensembl GRCm39 Ensembl GRCm38 13 24,801,657 - 24,812,899 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 13 24,801,657 - 24,816,197 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 13 24,893,526 - 24,904,768 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 13 24,809,122 - 24,820,364 (+) NCBI MGSCv36 mm8 Celera 13 25,032,322 - 25,043,564 (+) NCBI Celera Cytogenetic Map 13 A3.1 NCBI cM Map 13 10.68 NCBI
LOC102009721 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955483 2,346,246 - 2,358,156 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955483 2,346,246 - 2,358,156 (+) NCBI ChiLan1.0 ChiLan1.0
C5H6orf62 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 5 39,355,474 - 39,372,837 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 6 35,355,011 - 35,372,360 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 6 24,543,074 - 24,559,096 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 6 24,874,941 - 24,891,081 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 6 24,875,047 - 24,891,081 (-) Ensembl panpan1.1 panPan2
C35H6orf62 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 35 22,725,186 - 22,741,526 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 35 22,726,357 - 22,741,119 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 35 22,692,529 - 22,708,852 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 35 22,847,340 - 22,863,737 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 35 22,846,861 - 22,864,328 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 35 22,652,800 - 22,669,174 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 35 22,700,379 - 22,716,750 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 35 24,136,690 - 24,153,084 (-) NCBI UU_Cfam_GSD_1.0
CUNH6orf62 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
C7H6orf62 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 7 19,509,691 - 19,524,830 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 7 19,509,676 - 19,524,905 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 7 20,662,445 - 20,677,593 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CUNH6orf62 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 17 47,534,547 - 47,549,611 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 17 47,535,883 - 47,548,354 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666044 24,631,541 - 24,646,747 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
CUNH6orf62 (Heterocephalus glaber - naked mole-rat)
QTLs in Region (mRatBN7.2)
1354581 Bp247 Blood pressure QTL 247 4.5 arterial blood pressure trait (VT:2000000) pulse pressure (CMO:0000292) 17 1 69599340 Rat 2300002 Iddm36 Insulin dependent diabetes mellitus QTL 36 1.98 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 17 9991286 40540197 Rat 1354640 Scl32 Serum cholesterol level QTL 32 5.4 blood HDL cholesterol amount (VT:0000184) blood high density lipoprotein cholesterol level (CMO:0000052) 17 15781592 60781592 Rat 152023626 Bp403 Blood pressure QTL 403 3.86 arterial blood pressure trait (VT:2000000) 17 23930421 79524188 Rat 2301412 Kidm40 Kidney mass QTL 40 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 17 37479847 82479847 Rat 9590107 Sffal7 Serum free fatty acids level QTL 7 4.81 0.001 blood free fatty acid amount (VT:0001553) plasma free fatty acids level (CMO:0000546) 17 28409147 73409147 Rat 2302377 Scl61 Serum cholesterol level QTL 61 4.36 blood HDL cholesterol amount (VT:0000184) serum high density lipoprotein cholesterol level (CMO:0000361) 17 27389946 53481766 Rat 70157 Niddm32 Non-insulin dependent diabetes mellitus QTL 32 4.34 blood glucose amount (VT:0000188) blood glucose level area under curve (AUC) (CMO:0000350) 17 22454924 50909196 Rat 724549 Niddm56 Non-insulin dependent diabetes mellitus QTL 56 0.03 blood glucose amount (VT:0000188) blood glucose level area under curve (AUC) (CMO:0000350) 17 31990784 76990784 Rat 1354651 Lmblg2 Limb length QTL 2 6 tibia length (VT:0004357) tibia length (CMO:0000450) 17 4299130 69599340 Rat 1354628 Stl13 Serum triglyceride level QTL 13 3.8 blood triglyceride amount (VT:0002644) blood triglyceride level (CMO:0000118) 17 21293039 60781592 Rat 1581512 Cm55 Cardiac mass QTL 55 2.8 0.05 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 17 27027949 56836890 Rat 10054088 Scort28 Serum corticosterone level QTL 28 2.04 0.0102 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 17 4528038 49528038 Rat 1354630 Cm34 Cardiac mass QTL 34 8.7 heart left ventricle mass (VT:0007031) heart left ventricle wet weight (CMO:0000071) 17 4299130 69599340 Rat 61394 Bp8 Blood pressure QTL 8 2.2 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 17 23080567 59555013 Rat 1559055 Bp278 Blood pressure QTL 278 0.04 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 23653184 68653184 Rat 10450503 Bp386 Blood pressure QTL 386 0.28 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 31368391 62109574 Rat 152025238 Slep14 Serum leptin concentration QTL 14 4.62 blood leptin amount (VT:0005667) 17 24184890 79524188 Rat 1354638 Insul1 Insulin level QTL 1 4.8 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 17 4299130 69599340 Rat 2313854 Bp343 Blood pressure QTL 343 3.9 life span trait (VT:0005372) age at time of death (CMO:0001193) 17 31990784 50909196 Rat 2317054 Aia12 Adjuvant induced arthritis QTL 12 4.24 joint integrity trait (VT:0010548) left rear ankle joint diameter (CMO:0002149) 17 38281509 83281509 Rat 1331765 Hrtrt15 Heart rate QTL 15 4.094 heart pumping trait (VT:2000009) heart rate (CMO:0000002) 17 15330613 55836425 Rat 8552928 Pigfal9 Plasma insulin-like growth factor 1 level QTL 9 9 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 17 28409147 73409147 Rat 1300148 Bp192 Blood pressure QTL 192 3.47 arterial blood pressure trait (VT:2000000) blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) 17 34550843 73951021 Rat 2317060 Aia26 Adjuvant induced arthritis QTL 26 3.22 joint integrity trait (VT:0010548) right rear ankle joint diameter (CMO:0002150) 17 38281509 83281509 Rat 2303627 Vencon8 Ventilatory control QTL 8 0.001 respiration trait (VT:0001943) tidal volume (CMO:0000222) 17 4528038 49528038 Rat 12903980 Cm120 Cardiac mass QTL 120 0.002 heart right ventricle mass (VT:0007033) heart right ventricle weight to body weight ratio (CMO:0000914) 17 23653184 68653184 Rat 12903981 Am17 Aortic mass QTL 17 0.001 aorta mass (VT:0002845) aorta weight to aorta length to body weight ratio (CMO:0002722) 17 23653184 68653184 Rat 4889955 Bss93 Bone structure and strength QTL 93 4.4 tibia size trait (VT:0100001) tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727) 17 27027949 60463643 Rat 2303561 Bw91 Body weight QTL 91 2 body mass (VT:0001259) body weight (CMO:0000012) 17 8868462 53868462 Rat 12903982 Kidm70 Kidney mass QTL 70 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 17 23653184 70974005 Rat 12903978 Cm118 Cardiac mass QTL 118 0.001 heart mass (VT:0007028) heart wet weight to body weight ratio (CMO:0002408) 17 23653184 68653184 Rat 2324621 Coatc5 Coat color QTL 5 coat/hair pigmentation trait (VT:0010463) pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) 17 31368391 73951021 Rat 12903979 Cm119 Cardiac mass QTL 119 0.001 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 17 23653184 68653184 Rat 1354619 Bp242 Blood pressure QTL 242 6.3 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 17 24599340 69599340 Rat 1354596 Bw32 Body weight QTL 32 4.5 body mass (VT:0001259) body weight (CMO:0000012) 17 4299130 60781592 Rat 1354662 Rf49 Renal function QTL 49 2.9 blood creatinine amount (VT:0005328) plasma creatinine level (CMO:0000537) 17 1 69599340 Rat 152023740 Bp406 Blood pressure QTL 406 6.06 arterial blood pressure trait (VT:2000000) 17 23930421 79524188 Rat 1354663 Bvd5 Brain ventricular dilatation QTL 5 3.51 0.001 brain ventricle morphology trait (VT:0000822) hydrocephalus severity score (CMO:0001881) 17 31990784 81292925 Rat 7488966 Bp370 Blood pressure QTL 370 0.001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 23653184 57246843 Rat 1354658 Spl8 Serum phospholipid level QTL 8 3.8 blood VLDL phospholipid amount (VT:0010507) blood very low density lipoprotein phospholipid level (CMO:0001571) 17 1 60781592 Rat 152023737 Bp405 Blood pressure QTL 405 5.06 arterial blood pressure trait (VT:2000000) 23930421 79524188 Rat 1354659 Scl68 Serum cholesterol level QTL 68 3.9 blood VLDL cholesterol amount (VT:0005144) blood very low density lipoprotein cholesterol level (CMO:0000648) 17 15781592 60781592 Rat 152023736 Bp404 Blood pressure QTL 404 3.78 arterial blood pressure trait (VT:2000000) 17 23930421 79524188 Rat 724528 Uae4 Urinary albumin excretion QTL 4 4.9 0.0001 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 17 35837085 69599340 Rat