Oas1a (2'-5' oligoadenylate synthetase 1A) - Rat Genome Database

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Gene: Oas1a (2'-5' oligoadenylate synthetase 1A) Rattus norvegicus
Analyze
Symbol: Oas1a
Name: 2'-5' oligoadenylate synthetase 1A
RGD ID: 621760
Description: Enables 2'-5'-oligoadenylate synthetase activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; regulation of cytokine production; and regulation of innate immune response. Located in nucleus. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human OAS1 (2'-5'-oligoadenylate synthetase 1); PARTICIPATES IN hepatitis C pathway; influenza A pathway; measles pathway; INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; Actein; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: (2-5')oligo(A) synthase 1; (2-5')oligo(A) synthase 1A; (2-5')oligo(A) synthetase 1; 2',5'-oligoadenylate synthetase 1, 40/46kDa; 2'-5' oligoadenylate synthetase 1G; 2'-5'-oligoadenylate synthase 1; 2'-5'-oligoadenylate synthase 1A; 2'-5'-oligoadenylate synthetase 1; 2-5A synthase 1; 2-5A synthase 1A; 2-5A synthetase 1; 25 oligoadenylate synthetase; MGC93097; Oas1; Oas1g
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,330,423 - 41,341,130 (+)NCBIGRCr8
mRatBN7.21235,669,798 - 35,680,505 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,669,801 - 35,680,517 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,848,682 - 36,859,311 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01237,459,883 - 37,470,514 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01236,512,331 - 36,522,962 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01241,200,680 - 41,211,393 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,200,718 - 41,211,909 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01243,064,691 - 43,075,400 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,806,061 - 36,816,722 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,669,448 - 36,680,110 (+)NCBI
Celera1237,333,307 - 37,343,967 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6alpha-methylprednisolone  (ISO)
acetylsalicylic acid  (ISO)
Actein  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
aluminium atom  (ISO)
aluminium(0)  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
ATP  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carnosic acid  (ISO)
ciglitazone  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
diclofenac  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
epoxiconazole  (ISO)
formaldehyde  (ISO)
fructose  (ISO)
glucose  (ISO)
hydroquinone  (ISO)
isotretinoin  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methotrexate  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
niclosamide  (ISO)
nicotine  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctanoic acid  (ISO)
poly(I:C)  (ISO)
potassium chromate  (ISO)
prednisolone  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
ribavirin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium aurothiomalate  (ISO)
sodium fluoride  (EXP)
sotorasib  (ISO)
succimer  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thalidomide  (ISO)
tofacitinib  (ISO)
trametinib  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
valproic acid  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,IEA,ISO)
endoplasmic reticulum  (IEA)
membrane  (IBA,IEA)
mitochondrion  (IEA,ISO)
nucleoplasm  (IBA,IEA,ISO)
nucleus  (IDA,ISO)
ribosome  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Characterization of oligoadenylate synthetase-1 expression in rat mammary gland and prostate: effects of 17beta-estradiol on the regulation of OAS1g in both tissues. Maia CJ, etal., Mol Cell Biochem. 2008 Jul;314(1-2):113-21. doi: 10.1007/s11010-008-9771-z. Epub 2008 Apr 18.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. The mammalian 2'-5' oligoadenylate synthetase gene family: evidence for concerted evolution of paralogous Oas1 genes in Rodentia and Artiodactyla. Perelygin AA, etal., J Mol Evol. 2006 Oct;63(4):562-76. Epub 2006 Oct 5.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Transgenic potato plants expressing mammalian 2'-5' oligoadenylate synthetase are protected from potato virus X infection under field conditions. Truve E, etal., Biotechnology (N Y) 1993 Sep;11(9):1048-52.
Additional References at PubMed
PMID:3753689   PMID:3754863   PMID:6654863   PMID:11682059   PMID:12477932   PMID:12799444   PMID:12892903   PMID:18931074   PMID:19923450   PMID:20844035   PMID:21245038   PMID:23319625  
PMID:23575436   PMID:25930096   PMID:28146100   PMID:30822544  


Genomics

Comparative Map Data
Oas1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,330,423 - 41,341,130 (+)NCBIGRCr8
mRatBN7.21235,669,798 - 35,680,505 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,669,801 - 35,680,517 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,848,682 - 36,859,311 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01237,459,883 - 37,470,514 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01236,512,331 - 36,522,962 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01241,200,680 - 41,211,393 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,200,718 - 41,211,909 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01243,064,691 - 43,075,400 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,806,061 - 36,816,722 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,669,448 - 36,680,110 (+)NCBI
Celera1237,333,307 - 37,343,967 (+)NCBICelera
Cytogenetic Map12q16NCBI
OAS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812112,906,962 - 112,933,219 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12112,905,856 - 112,933,219 (+)EnsemblGRCh38hg38GRCh38
GRCh3712113,344,767 - 113,371,024 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612111,829,122 - 111,842,095 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412111,807,531 - 111,820,427NCBI
Celera12112,971,828 - 112,984,801 (+)NCBICelera
Cytogenetic Map12q24.13NCBI
HuRef12110,357,341 - 110,370,314 (+)NCBIHuRef
CHM1_112113,313,139 - 113,326,112 (+)NCBICHM1_1
T2T-CHM13v2.012112,883,649 - 112,909,905 (+)NCBIT2T-CHM13v2.0
Oas1g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,014,205 - 121,025,676 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5121,014,205 - 121,025,676 (-)EnsemblGRCm39 Ensembl
GRCm385120,876,142 - 120,887,613 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5120,876,142 - 120,887,613 (-)EnsemblGRCm38mm10GRCm38
MGSCv375121,326,151 - 121,337,607 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365121,136,759 - 121,148,215 (-)NCBIMGSCv36mm8
Celera5117,962,394 - 117,973,852 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map560.65NCBI
OAS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210120,996,177 - 121,009,992 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112120,992,579 - 121,006,388 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012110,511,984 - 110,525,343 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112113,896,687 - 113,922,082 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12113,896,760 - 113,921,814 (+)Ensemblpanpan1.1panPan2
OAS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12610,385,393 - 10,396,734 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2610,385,447 - 10,396,733 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2610,503,053 - 10,513,130 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02610,624,806 - 10,636,143 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2610,624,845 - 10,638,025 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12610,598,606 - 10,608,681 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02610,661,801 - 10,671,881 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02610,710,236 - 10,720,322 (+)NCBIUU_Cfam_GSD_1.0
OAS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1438,851,918 - 38,859,409 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11438,851,083 - 38,867,427 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21441,260,747 - 41,268,627 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OAS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111108,163,203 - 108,176,191 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11108,163,299 - 108,176,193 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037136,898,457 - 136,923,042 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Oas1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474719,428,833 - 19,434,550 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474719,428,994 - 19,434,512 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Oas1a
187 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:363
Count of miRNA genes:168
Interacting mature miRNAs:181
Transcripts:ENSRNOT00000038426, ENSRNOT00000048450, ENSRNOT00000057279, ENSRNOT00000067176
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat

Markers in Region
RH129983  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21235,680,351 - 35,680,501 (+)MAPPERmRatBN7.2
mRatBN7.21235,680,351 - 35,680,501 (-)MAPPERmRatBN7.2
Rnor_6.01241,293,807 - 41,293,956NCBIRnor6.0
Rnor_6.01241,211,240 - 41,211,389NCBIRnor6.0
Rnor_5.01243,152,978 - 43,153,127UniSTSRnor5.0
Rnor_5.01243,075,247 - 43,075,396UniSTSRnor5.0
RGSC_v3.41236,896,820 - 36,896,969UniSTSRGSC3.4
RGSC_v3.41236,816,573 - 36,816,722UniSTSRGSC3.4
Celera1237,343,818 - 37,343,967UniSTS
Celera1237,425,280 - 37,425,429UniSTS
RH 3.4 Map12621.5UniSTS
Cytogenetic Map12q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 5 5 8 5 13 9
Low 3 21 42 26 11 26 6 8 41 15 26 2 6
Below cutoff 20 10 10 10 2 3 31 20 2 2

Sequence


RefSeq Acc Id: ENSRNOT00000038426   ⟹   ENSRNOP00000036734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1235,669,801 - 35,680,501 (+)Ensembl
Rnor_6.0 Ensembl1241,200,718 - 41,211,909 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000041741   ⟹   ENSRNOP00000048411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1235,669,801 - 35,680,517 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000048450   ⟹   ENSRNOP00000040841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1235,669,835 - 35,680,501 (+)Ensembl
Rnor_6.0 Ensembl1241,200,729 - 41,211,389 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000067176   ⟹   ENSRNOP00000059183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1235,669,801 - 35,679,657 (+)Ensembl
Rnor_6.0 Ensembl1241,200,776 - 41,210,449 (+)Ensembl
RefSeq Acc Id: NM_138913   ⟹   NP_620268
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,330,466 - 41,341,126 (+)NCBI
mRatBN7.21235,669,835 - 35,680,501 (+)NCBI
Rnor_6.01241,200,729 - 41,211,389 (+)NCBI
Rnor_5.01243,064,691 - 43,075,400 (+)NCBI
RGSC_v3.41236,806,061 - 36,816,722 (+)RGD
Celera1237,333,307 - 37,343,967 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249382   ⟹   XP_006249444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,330,423 - 41,341,130 (+)NCBI
mRatBN7.21235,669,798 - 35,680,505 (+)NCBI
Rnor_6.01241,200,680 - 41,211,393 (+)NCBI
Rnor_5.01243,064,691 - 43,075,400 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063271037   ⟹   XP_063127107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,330,461 - 41,341,130 (+)NCBI
RefSeq Acc Id: NP_620268   ⟸   NM_138913
- UniProtKB: Q05961 (UniProtKB/Swiss-Prot),   G3V9A4 (UniProtKB/TrEMBL),   A6J1H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249444   ⟸   XM_006249382
- Peptide Label: isoform X1
- UniProtKB: Q05961 (UniProtKB/Swiss-Prot),   Q5MYW5 (UniProtKB/TrEMBL),   F7EEP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000059183   ⟸   ENSRNOT00000067176
RefSeq Acc Id: ENSRNOP00000040841   ⟸   ENSRNOT00000048450
RefSeq Acc Id: ENSRNOP00000036734   ⟸   ENSRNOT00000038426
RefSeq Acc Id: ENSRNOP00000048411   ⟸   ENSRNOT00000041741
RefSeq Acc Id: XP_063127107   ⟸   XM_063271037
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q05961-F1-model_v2 AlphaFold Q05961 1-358 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698663
Promoter ID:EPDNEW_R9186
Type:initiation region
Name:Oas1a_1
Description:2'-5' oligoadenylate synthetase 1A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01241,200,720 - 41,200,780EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621760 AgrOrtholog
BioCyc Gene G2FUF-19196 BioCyc
Ensembl Genes ENSRNOG00000001369 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038426.7 UniProtKB/TrEMBL
  ENSRNOT00000041741.5 UniProtKB/TrEMBL
  ENSRNOT00000048450 ENTREZGENE
  ENSRNOT00000048450.5 UniProtKB/TrEMBL
  ENSRNOT00000067176.5 UniProtKB/TrEMBL
Gene3D-CATH 2'-5'-oligoadenylate synthetase 1, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7191865 IMAGE-MGC_LOAD
InterPro 2-5-oligoadenylate_synth_CS UniProtKB/Swiss-Prot
  2-5-oligoadenylate_synth_N UniProtKB/Swiss-Prot
  2-5-oligoAdlate_synth_1_dom2/C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2-5OAS_C_CS UniProtKB/TrEMBL
  2-5OAS_N_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NT_2-5OAS_ClassI-CCAase UniProtKB/TrEMBL
  NT_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Polymerase_NTP_transf_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:192281 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93097 IMAGE-MGC_LOAD
NCBI Gene 192281 ENTREZGENE
PANTHER 2'-5'-OLIGOADENYLATE SYNTHASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11258 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NTP_transf_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OAS1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Oas1a PhenoGen
PROSITE 25A_SYNTH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  25A_SYNTH_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  25A_SYNTH_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001369 RatGTEx
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81301 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8J8XSI7_RAT UniProtKB/TrEMBL
  A6J1H0 ENTREZGENE, UniProtKB/TrEMBL
  D4A5A2_RAT UniProtKB/TrEMBL
  F7EEP6 ENTREZGENE
  G3V9A4 ENTREZGENE, UniProtKB/TrEMBL
  OAS1A_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5MYW5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7EEP6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-25 Oas1a  2'-5' oligoadenylate synthetase 1A  Oas1  2',5'-oligoadenylate synthetase 1, 40/46kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Oas1  2',5'-oligoadenylate synthetase 1, 40/46kDa    25 oligoadenylate synthetase  Name updated 1299863 APPROVED
2002-08-07 Oas1  25 oligoadenylate synthetase      Symbol and Name status set to provisional 70820 PROVISIONAL