LOC120098669 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120098669 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120098669
Name: U6 spliceosomal RNA
RGD ID: 40927555
Description: INTERACTS WITH methylparaben (ortholog)
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,821,880 - 51,821,981 (-)NCBIGRCr8
mRatBN7.21934,912,121 - 34,912,222 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,912,121 - 34,912,222 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1939,207,160 - 39,207,261 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
LOC120098669
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,821,880 - 51,821,981 (-)NCBIGRCr8
mRatBN7.21934,912,121 - 34,912,222 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,912,121 - 34,912,222 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1939,207,160 - 39,207,261 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map19q12NCBI
RNU6-415P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381578,898,840 - 78,898,936 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1578,898,840 - 78,898,936 (-)EnsemblGRCh38hg38GRCh38
GRCh371579,191,182 - 79,191,278 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q25.1NCBI
CHM1_11579,309,363 - 79,309,459 (-)NCBICHM1_1
T2T-CHM13v2.01576,762,511 - 76,762,607 (-)NCBIT2T-CHM13v2.0
LOC119868099
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3816,867,410 - 16,867,514 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03816,857,357 - 16,857,461 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3816,857,357 - 16,857,461 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13816,862,844 - 16,862,948 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03817,212,516 - 17,212,620 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03817,506,419 - 17,506,523 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005497095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000084234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1934,912,121 - 34,912,222 (-)Ensembl
RefSeq Acc Id: XR_005497095
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,821,880 - 51,821,981 (-)NCBI
mRatBN7.21934,912,121 - 34,912,222 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5769 BioCyc
Ensembl Genes ENSRNOG00000051781 Ensembl
NCBI Gene LOC120098669 ENTREZGENE
PhenoGen LOC120098669 PhenoGen
RatGTEx ENSRNOG00000051781 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120098669  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15006668 737654 PROVISIONAL
2021-01-26 LOC120098669  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL