Smim7 (small integral membrane protein 7)

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Gene: Smim7 (small integral membrane protein 7) Rattus norvegicus

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Symbol:

Smim7

Name:

small integral membrane protein 7

RGD ID:

1588793

Description:

Predicted to be located in membrane. Orthologous to human SMIM7 (small integral membrane protein 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC688495; LOC688495; UPF0608 protein C19orf42 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SMIM7 (small integral membrane protein 7)	HGNC	EggNOG, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Smim7 (small integral membrane protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Smim7 (small integral membrane protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SMIM7 (small integral membrane protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SMIM7 (small integral membrane protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Smim7 (small integral membrane protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SMIM7 (small integral membrane protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SMIM7 (small integral membrane protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Smim7 (small integral membrane protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SMIM7 (small integral membrane protein 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Smim7 (small integral membrane protein 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	smim7 (small integral membrane protein 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y51H7C.41	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	smim7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	17,308,466 - 17,312,384 (+)	NCBI		GRCr8
mRatBN7.2	16	17,274,417 - 17,278,336 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	17,273,258 - 17,278,336 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	17,343,093 - 17,347,014 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	18,474,074 - 18,477,987 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	17,396,017 - 17,399,938 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	18,975,746 - 18,979,664 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	18,975,746 - 18,979,651 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	18,838,290 - 18,842,208 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	17,685,244 - 17,689,162 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	17,494,238 - 17,498,155 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

alpha-pinene (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

arsenite(3-) (ISO)

atrazine (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

clobetasol (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

glafenine (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

lead(0) (ISO)

methyl methanesulfonate (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (EXP)

pinostrobin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

theophylline (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

Smim7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	17,308,466 - 17,312,384 (+)	NCBI		GRCr8
mRatBN7.2	16	17,274,417 - 17,278,336 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	17,273,258 - 17,278,336 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	17,343,093 - 17,347,014 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	18,474,074 - 18,477,987 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	17,396,017 - 17,399,938 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	18,975,746 - 18,979,664 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	18,975,746 - 18,979,651 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	18,838,290 - 18,842,208 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	17,685,244 - 17,689,162 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	17,494,238 - 17,498,155 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

SMIM7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	16,630,751 - 16,660,144 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	16,630,751 - 16,660,442 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	16,756,959 - 16,770,955 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	16,617,959 - 16,631,968 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	16,658,798 - 16,672,807 (-)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	16,325,671 - 16,339,680 (-)	NCBI		HuRef
CHM1_1	19	16,756,458 - 16,770,467 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	16,765,542 - 16,795,838 (-)	NCBI		T2T-CHM13v2.0

Smim7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	73,319,042 - 73,324,892 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	73,319,032 - 73,324,932 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	72,565,198 - 72,571,048 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	72,565,188 - 72,571,088 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	75,089,097 - 75,094,947 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	75,494,187 - 75,500,037 (-)	NCBI		MGSCv36	mm8
Celera	8	76,911,534 - 76,917,386 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	35.08	NCBI

Smim7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955773	11,432 - 22,562 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955773	11,432 - 22,562 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMIM7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	21,503,003 - 21,531,892 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	20,509,090 - 20,538,482 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	16,121,450 - 16,149,780 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	17,099,476 - 17,128,899 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,115,036 - 17,128,899 (-)	Ensembl	panpan1.1		panPan2

SMIM7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,895,891 - 45,908,107 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	45,809,395 - 45,821,574 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	46,382,868 - 46,395,010 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	20	45,618,122 - 45,630,252 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	46,028,689 - 46,041,031 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	46,304,039 - 46,316,181 (+)	NCBI		UU_Cfam_GSD_1.0

Smim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	204,435,837 - 204,443,456 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	3,985,035 - 3,992,274 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	3,985,032 - 3,992,274 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMIM7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,961,363 - 60,976,497 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,961,532 - 60,970,775 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	60,549,159 - 60,557,590 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SMIM7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,154,397 - 15,169,006 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666074	4,299,725 - 4,331,592 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smim7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	850,769 - 860,874 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	850,164 - 867,427 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Smim7
20 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	519
Count of miRNA genes:	255
Interacting mature miRNAs:	291
Transcripts:	ENSRNOT00000066121
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	15726433	21034895	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
61372	Bp40	Blood pressure QTL 40	2.2		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	16	4227730	17696785	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

Markers in Region

RH134960

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	17,275,667 - 17,275,850 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	18,976,997 - 18,977,179	NCBI	Rnor6.0
Rnor_5.0	16	18,839,541 - 18,839,723	UniSTS	Rnor5.0
RGSC_v3.4	16	17,686,495 - 17,686,677	UniSTS	RGSC3.4
Celera	16	17,495,492 - 17,495,674	UniSTS
RH 3.4 Map	16	176.8	UniSTS
Cytogenetic Map	16	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB570183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066121 ⟹ ENSRNOP00000061134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	17,274,422 - 17,278,301 (+)	Ensembl
Rnor_6.0 Ensembl	16	18,975,746 - 18,979,651 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107284 ⟹ ENSRNOP00000084978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	17,273,258 - 17,278,336 (+)	Ensembl

RefSeq Acc Id:

NM_001135252 ⟹ NP_001128724

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	17,308,466 - 17,312,384 (+)	NCBI
mRatBN7.2	16	17,274,417 - 17,278,336 (+)	NCBI
Rnor_6.0	16	18,975,746 - 18,979,664 (+)	NCBI
Rnor_5.0	16	18,838,290 - 18,842,208 (+)	NCBI
RGSC_v3.4	16	17,685,244 - 17,689,162 (+)	RGD
Celera	16	17,494,238 - 17,498,155 (+)	RGD

Sequence:

show sequence

TTTCCGGTTTGACCGATGCCTTGGCTGTAAGGATGATCGGAGACATACTGCTGTTCGGGACGCT
ACTGATGAACGCCGGGGCTGTGCTCAACTTTAAACTGAAAAAGAAGGACACGCAAGGCTTTGGG
GAGGAATCGAGGGAACCTAGCACAGGCGACAACATCCGAGAGTTTTTACTGAGCCTGAGGTATT
TCCGGATCTTCATTGCGCTGTGGAATGTGTTCATGATGCTCTGCATGATCGTACTGTTCGGCTC
TTGAGCCCTGCATGGAACCCAGAGCTTACCTGCTGGACATCGAGGCTCCATTTCTGATGACTTC
AAGAATGCTCACTGGAAAACCAGGGACCTTCCCAGAAGGTTCCAGCTCATTTGGGTGGAGAACG
TCCATCTCCCAGGCACTTGACCCTTTGCAGCCACAGTTCCACCTGTCTTTTGCAGTTTCAGGAA
GATCTGTAAGCCACAGTGACAGAGTCAGGCTTTGTTAGGAGAAAGACCTAGATCTTTCCCTTGT
TCTGCCATTCTATCTTCTCCTGGCCCAGCCTCTCCAGAAACCTGACCTAGGCTATTTCTTGGTT
GACTTGTTAGTGATCGTTTTGCTTTGATTTGGGTTTGAGGGTTTTGGTTTTTTTTTTTTTTTTT
TTATTGATACGGTTTCTCTGCAGCCCTGGCTGTCCTGGAGCTCGGGCACCAGACTGGCCTCAAA
CTTACAGAGCTCCACCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACTCC
TTAGTTGATGTGAATCAGGCACCGGCTTGCAGGGCTAGCCATGAAAGTCTAGCAGCCTCTTTTG
CACTACAAGGTCCATGCTGATGGACCCAACAGTCTGGGGCTAGTGAGGTCTTACGTCCAAACAC
TTCCTTCTTACTCCGTGACAGGGTTTACCTGGATCAGCGAAAGTCTGCTCCAGCACTCGAAGGA
GCAGGTCCACCGCCCTTGGGACACCAGCCTCTTTAGACGCTAAGCGTTAGCCATAACATGCTTC
TTCAGAAGAGGCCTGTAGAAGAGGTGCTGTGGTGATGTTAGCAGACACCTCTCTGTGCTTTCAA
GCCGCTTGTCAATAAAGTGTCTTTGGGGGCTGGAGAGATGGCTCAGCGGTCAAGAGCACTGACT
GCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCACCACATGGTGGCTCACAACCATCTGTAATG
GGCTCTGATACCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATATAATAAATCT
TTAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001128724	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58707	(Get FASTA)	NCBI Sequence Viewer
	B0BN70	(Get FASTA)	NCBI Sequence Viewer
	EDL90850	(Get FASTA)	NCBI Sequence Viewer
	EDL90851	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061134.2
	ENSRNOP00000084978.1

RefSeq Acc Id:	NP_001128724 ⟸ NM_001135252
- Peptide Label:	precursor
- UniProtKB:	B0BN70 (UniProtKB/Swiss-Prot), A6K9N6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESREPSTGDNIREFLLSLRYFRIFIALWNVF MMLCMIVLFGS hide sequence

Ensembl Acc Id:

ENSRNOP00000061134 ⟸ ENSRNOT00000066121

Ensembl Acc Id:

ENSRNOP00000084978 ⟸ ENSRNOT00000107284

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BN70-F1-model_v2	AlphaFold	B0BN70	1-75	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699980

Promoter ID:

EPDNEW_R10502

Type:

multiple initiation site

Name:

Smim7_1

Description:

small integral membrane protein 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	18,975,751 - 18,975,811	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1588793	AgrOrtholog
BioCyc Gene	G2FUF-11894	BioCyc
Ensembl Genes	ENSRNOG00000042037	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066121.2	UniProtKB/TrEMBL
	ENSRNOT00000107284.1	UniProtKB/TrEMBL
InterPro	SMIM7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:688495	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	688495	ENTREZGENE
PANTHER	PTHR28622	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SMALL INTEGRAL MEMBRANE PROTEIN 7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Smim7	PhenoGen
RatGTEx	ENSRNOG00000042037	RatGTEx
UniProt	A0A8I6GBB1_RAT	UniProtKB/TrEMBL
	A0A8L2QTH6_RAT	UniProtKB/TrEMBL
	A6K9N6	ENTREZGENE, UniProtKB/TrEMBL
	B0BN70	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-07	Smim7	small integral membrane protein 7	LOC688495	hypothetical protein LOC688495	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC688495	hypothetical protein LOC688495			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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