Asb5 (ankyrin repeat and SOCS box-containing 5) - Rat Genome Database

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Gene: Asb5 (ankyrin repeat and SOCS box-containing 5) Rattus norvegicus
Analyze
Symbol: Asb5
Name: ankyrin repeat and SOCS box-containing 5
RGD ID: 1565973
Description: Predicted to be involved in positive regulation of protein catabolic process and protein ubiquitination. Predicted to be located in membrane. Orthologous to human ASB5 (ankyrin repeat and SOCS box containing 5); INTERACTS WITH 1,3-dinitrobenzene; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat and SOCS box protein 5; hypothetical protein LOC361187; LOC361187; MGC114420; similar to ankyrin repeat and SOCs box-containing protein 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81643,970,940 - 44,038,318 (-)NCBIGRCr8
mRatBN7.21637,237,869 - 37,305,207 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1637,235,405 - 37,278,109 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1642,589,415 - 42,628,946 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01645,950,226 - 45,989,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01641,331,215 - 41,370,715 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01639,985,233 - 40,050,663 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1639,985,234 - 40,025,401 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01639,760,399 - 39,826,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1635,364,045 - 35,403,104 (-)NCBICelera
Cytogenetic Map16p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Asb5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81643,970,940 - 44,038,318 (-)NCBIGRCr8
mRatBN7.21637,237,869 - 37,305,207 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1637,235,405 - 37,278,109 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1642,589,415 - 42,628,946 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01645,950,226 - 45,989,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01641,331,215 - 41,370,715 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01639,985,233 - 40,050,663 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1639,985,234 - 40,025,401 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01639,760,399 - 39,826,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1635,364,045 - 35,403,104 (-)NCBICelera
Cytogenetic Map16p11NCBI
ASB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384176,213,673 - 176,277,524 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4176,213,673 - 176,277,571 (-)EnsemblGRCh38hg38GRCh38
GRCh374177,134,824 - 177,190,373 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364177,371,822 - 177,427,269 (-)NCBINCBI36Build 36hg18NCBI36
Build 344177,509,976 - 177,565,424NCBI
Celera4174,462,813 - 174,518,217 (-)NCBICelera
Cytogenetic Map4q34.2NCBI
HuRef4172,885,504 - 172,941,331 (-)NCBIHuRef
CHM1_14177,111,529 - 177,166,815 (-)NCBICHM1_1
T2T-CHM13v2.04179,552,031 - 179,616,715 (-)NCBIT2T-CHM13v2.0
Asb5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39855,003,366 - 55,040,877 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl854,982,615 - 55,040,910 (+)EnsemblGRCm39 Ensembl
GRCm38854,550,331 - 54,587,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl854,529,580 - 54,587,875 (+)EnsemblGRCm38mm10GRCm38
MGSCv37855,635,684 - 55,673,189 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36856,049,028 - 56,086,533 (+)NCBIMGSCv36mm8
Celera857,263,821 - 57,301,277 (+)NCBICelera
Cytogenetic Map8B1.3NCBI
cM Map829.27NCBI
Asb5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540331,498,275 - 31,537,662 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540331,498,343 - 31,537,605 (+)NCBIChiLan1.0ChiLan1.0
ASB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23173,912,097 - 173,984,679 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14174,293,792 - 174,366,287 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04168,395,946 - 168,460,887 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14180,630,051 - 180,685,113 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4180,629,905 - 180,692,422 (-)Ensemblpanpan1.1panPan2
ASB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11653,299,076 - 53,351,339 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1653,298,516 - 53,349,421 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1648,801,206 - 48,853,327 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01655,614,666 - 55,666,541 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1655,616,233 - 55,666,570 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11653,508,244 - 53,560,277 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01654,104,508 - 54,156,142 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01654,342,862 - 54,394,856 (+)NCBIUU_Cfam_GSD_1.0
Asb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494326,396,842 - 26,488,966 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365166,811,130 - 6,903,045 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365166,811,144 - 6,903,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1538,710,179 - 38,790,460 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11538,710,183 - 38,766,769 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21544,412,392 - 44,472,241 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17122,284,195 - 122,373,998 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7122,285,865 - 122,344,277 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037102,363,315 - 102,424,794 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asb5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247697,242,382 - 7,311,303 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247697,244,995 - 7,317,038 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Asb5
192 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:48
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000066639
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat

Markers in Region
RH140219  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21637,238,461 - 37,239,930 (+)MAPPERmRatBN7.2
Rnor_6.01639,985,821 - 39,987,289NCBIRnor6.0
Rnor_5.01639,760,987 - 39,762,455UniSTSRnor5.0
Celera1635,364,633 - 35,366,101UniSTS
RH141255  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21637,238,427 - 37,239,885 (+)MAPPERmRatBN7.2
Rnor_6.01639,985,787 - 39,987,244NCBIRnor6.0
Rnor_5.01639,760,953 - 39,762,410UniSTSRnor5.0
Celera1635,364,599 - 35,366,056UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 11 4 8
Low 3 37 49 33 19 33 74 35 37 11
Below cutoff 6 8 8 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001044247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066639   ⟹   ENSRNOP00000061114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1637,237,872 - 37,278,109 (-)Ensembl
Rnor_6.0 Ensembl1639,985,234 - 40,025,401 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089665   ⟹   ENSRNOP00000074476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1637,235,405 - 37,250,858 (-)Ensembl
Rnor_6.0 Ensembl1639,985,515 - 39,996,338 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103090   ⟹   ENSRNOP00000088645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1637,237,874 - 37,277,270 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116663   ⟹   ENSRNOP00000086492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1637,235,405 - 37,256,886 (-)Ensembl
RefSeq Acc Id: NM_001044247   ⟹   NP_001037712
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 44,010,437 (-)NCBI
mRatBN7.21637,237,874 - 37,277,373 (-)NCBI
Rnor_6.01639,985,233 - 40,025,401 (-)NCBI
Rnor_5.01639,760,399 - 39,826,806 (-)NCBI
Celera1635,364,045 - 35,403,104 (-)RGD
Sequence:
RefSeq Acc Id: NM_001399413   ⟹   NP_001386342
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 44,010,437 (-)NCBI
mRatBN7.21637,237,874 - 37,277,373 (-)NCBI
RefSeq Acc Id: NM_001399414   ⟹   NP_001386343
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 44,010,437 (-)NCBI
mRatBN7.21637,237,874 - 37,277,373 (-)NCBI
RefSeq Acc Id: XM_008771248   ⟹   XP_008769470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 43,985,001 (-)NCBI
mRatBN7.21637,237,869 - 37,251,988 (-)NCBI
Rnor_6.01639,985,233 - 39,999,674 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600190   ⟹   XP_017455679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 44,038,289 (-)NCBI
mRatBN7.21637,237,869 - 37,305,207 (-)NCBI
Rnor_6.01639,985,233 - 40,050,635 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094697   ⟹   XP_038950625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 43,982,070 (-)NCBI
mRatBN7.21637,237,869 - 37,248,998 (-)NCBI
RefSeq Acc Id: XM_039094698   ⟹   XP_038950626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 43,990,126 (-)NCBI
mRatBN7.21637,237,869 - 37,257,541 (-)NCBI
RefSeq Acc Id: XM_039094699   ⟹   XP_038950627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 43,983,267 (-)NCBI
mRatBN7.21637,237,869 - 37,250,203 (-)NCBI
RefSeq Acc Id: XM_039094701   ⟹   XP_038950629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 43,995,889 (-)NCBI
mRatBN7.21637,237,869 - 37,262,762 (-)NCBI
RefSeq Acc Id: XM_063275582   ⟹   XP_063131652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81643,970,940 - 44,038,318 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001037712   ⟸   NM_001044247
- Peptide Label: isoform 1
- UniProtKB: Q4KLY9 (UniProtKB/TrEMBL),   D4A0S9 (UniProtKB/TrEMBL),   A0A8I6A894 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769470   ⟸   XM_008771248
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K854 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455679   ⟸   XM_017600190
- Peptide Label: isoform X1
- UniProtKB: A0A8J8XZ77 (UniProtKB/TrEMBL),   A6JPH2 (UniProtKB/TrEMBL),   A0A8I6A894 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074476   ⟸   ENSRNOT00000089665
RefSeq Acc Id: ENSRNOP00000061114   ⟸   ENSRNOT00000066639
RefSeq Acc Id: XP_038950629   ⟸   XM_039094701
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038950626   ⟸   XM_039094698
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GE39 (UniProtKB/TrEMBL),   A0A8I6A894 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950627   ⟸   XM_039094699
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A894 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950625   ⟸   XM_039094697
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A894 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088645   ⟸   ENSRNOT00000103090
RefSeq Acc Id: ENSRNOP00000086492   ⟸   ENSRNOT00000116663
RefSeq Acc Id: NP_001386343   ⟸   NM_001399414
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001386342   ⟸   NM_001399413
- Peptide Label: isoform 2
- UniProtKB: A0A8J8XZ77 (UniProtKB/TrEMBL),   A6JPH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131652   ⟸   XM_063275582
- Peptide Label: isoform X1
- UniProtKB: A0A8J8XZ77 (UniProtKB/TrEMBL),   A6JPH2 (UniProtKB/TrEMBL)
Protein Domains
SOCS box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLY9-F1-model_v2 AlphaFold Q4KLY9 1-314 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700082
Promoter ID:EPDNEW_R10606
Type:single initiation site
Name:Asb5_1
Description:ankyrin repeat and SOCS box-containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01640,025,448 - 40,025,508EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565973 AgrOrtholog
BioCyc Gene G2FUF-11470 BioCyc
Ensembl Genes ENSRNOG00000042630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066639 ENTREZGENE
  ENSRNOT00000066639.4 UniProtKB/TrEMBL
  ENSRNOT00000089665.2 UniProtKB/TrEMBL
  ENSRNOT00000103090.1 UniProtKB/TrEMBL
  ENSRNOT00000116663.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  SOCS box UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7445963 IMAGE-MGC_LOAD
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ASB5_SOCS UniProtKB/TrEMBL
  SOCS_box_dom_like UniProtKB/TrEMBL
  SOCS_C UniProtKB/TrEMBL
KEGG Report rno:361187 UniProtKB/TrEMBL
MGC_CLONE MGC:114420 IMAGE-MGC_LOAD
NCBI Gene 361187 ENTREZGENE
PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 5 UniProtKB/TrEMBL
  SOWAH (DROSOPHILA) HOMOLOG UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
PhenoGen Asb5 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042630 RatGTEx
SMART ANK UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF158235 UniProtKB/TrEMBL
UniProt A0A0G2K854 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A894 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GE39 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J8XZ77 ENTREZGENE, UniProtKB/TrEMBL
  A6JPH2 ENTREZGENE, UniProtKB/TrEMBL
  D4A0S9 ENTREZGENE
  Q4KLY9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D4A0S9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Asb5  ankyrin repeat and SOCS box-containing 5  LOC361187  similar to ankyrin repeat and SOCs box-containing protein 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC361187  similar to ankyrin repeat and SOCs box-containing protein 5      Symbol and Name status set to provisional 70820 PROVISIONAL