Cep112 (centrosomal protein 112) - Rat Genome Database

Name: Cep112
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cep112 (centrosomal protein 112) Rattus norvegicus

Analyze

Symbol:

Cep112

Name:

centrosomal protein 112

RGD ID:

1564168

Description:

Acts upstream of or within receptor localization to synapse. Located in inhibitory synapse and plasma membrane. Human ortholog(s) of this gene implicated in spermatogenic failure 44. Orthologous to human CEP112 (centrosomal protein 112); INTERACTS WITH 2,5-hexanedione; acetamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Ccdc46; centrosomal protein 112kDa; centrosomal protein of 112 kDa; coiled-coil domain containing 46; coiled-coil domain-containing protein 46; LOC287776; RGD1564168; similar to hypothetical protein MGC33887

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CEP112 (centrosomal protein 112)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cep112 (centrosomal protein 112)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cep112 (centrosomal protein 112)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CEP112 (centrosomal protein 112)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CEP112 (centrosomal protein 112)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cep112 (centrosomal protein 112)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CEP112 (centrosomal protein 112)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103243175 (centrosomal protein of 112 kDa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cep112 (centrosomal protein 112)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CEP112 (centrosomal protein 112)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cep112 (centrosomal protein 112)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cep112 (centrosomal protein 112)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cep112	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	93,865,630 - 94,332,679 (+)	NCBI		GRCr8
mRatBN7.2	10	93,366,059 - 93,833,133 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	93,366,136 - 93,833,131 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	98,423,750 - 98,890,740 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	97,886,839 - 98,353,839 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	93,290,725 - 93,769,861 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	96,660,294 - 97,146,426 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	96,663,740 - 97,146,424 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	96,387,815 - 96,868,508 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	97,749,014 - 98,220,467 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	92,030,774 - 92,496,883 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

spermatogenic failure 44 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,5-hexanedione (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

7,12-dimethyltetraphene (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

choline (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dorsomorphin (ISO)

entinostat (ISO)

flutamide (EXP)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

indometacin (ISO)

L-methionine (ISO)

manganese(II) chloride (EXP)

methoxychlor (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

receptor localization to synapse (IDA)

Cellular Component

centrosome (ISO)

inhibitory synapse (IDA)

plasma membrane (IDA)

Molecular Function

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Identification and characterisation of a Maf1/Macoco protein complex that interacts with GABAA receptors in neurons.	Smith KR, etal., Mol Cell Neurosci. 2010 Aug;44(4):330-41. doi: 10.1016/j.mcn.2010.04.004. Epub 2010 Apr 22.

Additional References at PubMed

PMID:12477932	PMID:21399614

Genomics

Comparative Map Data

Cep112
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	93,865,630 - 94,332,679 (+)	NCBI		GRCr8
mRatBN7.2	10	93,366,059 - 93,833,133 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	93,366,136 - 93,833,131 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	98,423,750 - 98,890,740 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	97,886,839 - 98,353,839 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	93,290,725 - 93,769,861 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	96,660,294 - 97,146,426 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	96,663,740 - 97,146,424 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	96,387,815 - 96,868,508 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	97,749,014 - 98,220,467 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	92,030,774 - 92,496,883 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

CEP112
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	65,635,537 - 66,192,133 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	65,635,537 - 66,192,133 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	63,631,655 - 64,188,251 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	61,062,120 - 61,618,435 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	60,201,968 - 60,760,023 (-)	NCBI		Celera
Cytogenetic Map	17	q24.1	NCBI
HuRef	17	59,023,867 - 59,580,156 (-)	NCBI		HuRef
CHM1_1	17	63,695,614 - 64,252,494 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	66,506,157 - 67,062,904 (-)	NCBI		T2T-CHM13v2.0

Cep112
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	108,316,041 - 108,751,441 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	108,316,018 - 108,751,441 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	108,425,215 - 108,860,615 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	108,425,192 - 108,860,615 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	108,286,580 - 108,721,929 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	108,288,107 - 108,676,705 (+)	NCBI		MGSCv36	mm8
Celera	11	120,159,534 - 120,595,941 (+)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	71.83	NCBI

Cep112
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	5,065,603 - 5,583,522 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	5,065,925 - 5,583,624 (-)	NCBI	ChiLan1.0	ChiLan1.0

CEP112
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	81,673,681 - 82,227,788 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	86,493,020 - 87,047,251 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	59,580,583 - 60,134,552 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	64,793,262 - 65,345,484 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	64,794,808 - 65,345,484 (-)	Ensembl	panpan1.1		panPan2

CEP112
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	14,107,437 - 14,507,304 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	14,114,852 - 14,507,298 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	15,001,419 - 15,401,030 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	15,769,746 - 16,171,159 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	15,776,941 - 16,171,153 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	14,716,294 - 15,116,854 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	12,416,756 - 12,816,973 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	12,417,993 - 12,817,807 (-)	NCBI		UU_Cfam_GSD_1.0

Cep112
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	12,038,231 - 12,489,119 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	6,705,474 - 7,155,940 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	6,713,365 - 7,156,092 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CEP112
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	12,392,875 - 12,815,800 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	12,340,283 - 12,815,830 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	13,030,858 - 13,125,622 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103243175
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	55,250,701 - 55,797,457 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	55,250,927 - 55,797,650 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666233	5,056 - 446,974 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cep112
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624870	2,141,578 - 2,727,478 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624870	2,133,136 - 2,727,880 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cep112
2291 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	41
Interacting mature miRNAs:	46
Transcripts:	ENSRNOT00000037067
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	72552416	93995749	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	74372084	94965338	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	94965338	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	78775516	98279596	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	80515287	101325465	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
12880055	Am11	Aortic mass QTL 11		0.004	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	84007272	95933025	Rat
2301398	Kidm38	Kidney mass QTL 38		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	84007272	95933025	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	84022321	93995963	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	85565469	103884409	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
2313856	Bp342	Blood pressure QTL 342	4.4	0.0001	life span trait (VT:0005372)	age at time of death (CMO:0001193)	10	87307617	96121100	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91228102	104060283	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	92238497	101012337	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93223816	107057807	Rat

Markers in Region

D10Rat138

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	93,774,733 - 93,774,956 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	97,083,938 - 97,084,160	NCBI	Rnor6.0
Rnor_5.0	10	96,810,027 - 96,810,249	UniSTS	Rnor5.0
RGSC_v3.4	10	98,162,829 - 98,163,052	RGD	RGSC3.4
RGSC_v3.4	10	98,162,830 - 98,163,052	UniSTS	RGSC3.4
RGSC_v3.1	10	98,177,199 - 98,177,422	RGD
Celera	10	92,439,237 - 92,439,459	UniSTS
SHRSP x BN Map	10	73.35	RGD
SHRSP x BN Map	10	73.35	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

D10Got147

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	93,776,758 - 93,776,944 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	97,085,963 - 97,086,150	NCBI	Rnor6.0
Rnor_5.0	10	96,812,052 - 96,812,239	UniSTS	Rnor5.0
RGSC_v3.4	10	98,164,854 - 98,165,042	RGD	RGSC3.4
RGSC_v3.4	10	98,164,855 - 98,165,042	UniSTS	RGSC3.4
RGSC_v3.1	10	98,179,225 - 98,179,412	RGD
Celera	10	92,441,262 - 92,441,449	UniSTS
RH 3.4 Map	10	1051.59	UniSTS
RH 3.4 Map	10	1051.59	RGD
RH 2.0 Map	10	1133.2	RGD
Cytogenetic Map	10	q32.1	UniSTS

D10Chm234

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	93,431,288 - 93,431,570 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	96,728,888 - 96,729,165	NCBI	Rnor6.0
Rnor_5.0	10	96,452,864 - 96,453,141	UniSTS	Rnor5.0
RGSC_v3.4	10	97,814,841 - 97,815,118	UniSTS	RGSC3.4
Celera	10	92,095,921 - 92,096,198	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

D10Chm160

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	93,732,024 - 93,732,273 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	97,034,135 - 97,034,383	NCBI	Rnor6.0
Rnor_5.0	10	96,760,224 - 96,760,472	UniSTS	Rnor5.0
RGSC_v3.4	10	98,119,880 - 98,120,128	UniSTS	RGSC3.4
Celera	10	92,396,423 - 92,396,671	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

D10Got234

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	93,553,154 - 93,553,288 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	96,856,838 - 96,856,971	NCBI	Rnor6.0
Rnor_5.0	10	96,581,160 - 96,581,293	UniSTS	Rnor5.0
RGSC_v3.4	10	97,938,068 - 97,938,201	UniSTS	RGSC3.4
Celera	10	92,217,589 - 92,217,722	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

AW533983

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	93,832,905 - 93,833,092 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	97,146,199 - 97,146,385	NCBI	Rnor6.0
Rnor_5.0	10	96,868,283 - 96,868,469	UniSTS	Rnor5.0
RGSC_v3.4	10	98,220,242 - 98,220,428	UniSTS	RGSC3.4
Celera	10	92,496,658 - 92,496,844	UniSTS
RH 3.4 Map	10	1035.7	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

BF389074

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	93,656,835 - 93,656,955 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	96,960,574 - 96,960,693	NCBI	Rnor6.0
Rnor_5.0	10	96,684,753 - 96,684,872	UniSTS	Rnor5.0
RGSC_v3.4	10	98,041,780 - 98,041,899	UniSTS	RGSC3.4
Celera	10	92,321,108 - 92,321,227	UniSTS
RH 3.4 Map	10	1024.2	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

AFM196xf6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	93,781,838 - 93,783,000 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	97,091,045 - 97,092,206	NCBI	Rnor6.0
Rnor_5.0	10	96,817,134 - 96,818,295	UniSTS	Rnor5.0
RGSC_v3.4	10	98,169,937 - 98,171,098	UniSTS	RGSC3.4
RGSC_v3.4	X	154,720,720 - 154,721,746	UniSTS	RGSC3.4
Celera	10	92,446,344 - 92,447,505	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium										18	28	8
Low	3	43	55	39	19	39	8	10	74	17	13	3	8
Below cutoff			2	2		2		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000037067 ⟹ ENSRNOP00000038168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	93,366,136 - 93,833,131 (+)	Ensembl
Rnor_6.0 Ensembl	10	96,663,740 - 97,146,424 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094127 ⟹ ENSRNOP00000095110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	93,374,332 - 93,833,131 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094758 ⟹ ENSRNOP00000081445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	93,653,646 - 93,833,131 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103166 ⟹ ENSRNOP00000084881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	93,654,354 - 93,833,131 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103396 ⟹ ENSRNOP00000088665

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	93,366,136 - 93,455,102 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104957 ⟹ ENSRNOP00000090063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	93,654,354 - 93,833,131 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108519 ⟹ ENSRNOP00000078824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	93,736,789 - 93,833,131 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110501 ⟹ ENSRNOP00000077677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	93,784,360 - 93,833,131 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000116903 ⟹ ENSRNOP00000086298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	93,366,136 - 93,833,131 (+)	Ensembl

RefSeq Acc Id:

NM_001105849 ⟹ NP_001099319

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,699 - 94,332,679 (+)	NCBI
mRatBN7.2	10	93,366,136 - 93,833,131 (+)	NCBI
Rnor_6.0	10	96,663,740 - 97,146,424 (+)	NCBI
Rnor_5.0	10	96,387,815 - 96,868,508 (+)	NCBI
RGSC_v3.4	10	97,749,014 - 98,220,467 (+)	RGD
Celera	10	92,030,774 - 92,496,883 (+)	RGD

Sequence:

show sequence

GCAACAGAGTTGAATGCCAGCCGCAGCTCGAGGGGGCGGGACAGGCAAGCTTGATAGTTCCGCC
CCTGGTTTGCTGGACGGCCCGCAAGGATTTGAAACCGTTCGGCTGTGGCGGCGGGGCGTCGGCG
GCCGAGTGGACCGCTTGCTTGTTGTGGCGCCAGATAGGAGTATGGAAATGGGAAGTGAAGAAGA
AAAATGGGAGAAGCTAGATGCAGAATTTGATCACTTCGTGGTAGATATGAAACCCTTTGTTCTA
AAATTACCCCACAGGTCAGAACGGCAGAGGTGTGCTCTTTGGATCAGAAAGCTGTGTGAGCCCT
CAGGAACAGGAGCAGGACTCATGGGCAGGAAGAATCGAAACCTGTATGCAAAGCTGCTACTGCA
TATGCTTAGGCGAGGGGTCCTTGAAGGCCCTTTCACACACCGCCCTGAGCCAGGGACACTGAAA
GTCTTACCATCATACATGTCCATCTATTTTGATGAGCCAAATTCAGCACAATCAAAAGATTCAA
GCCCGGAGAAGCTGCCTGACTGGGTGATGGGTGAGCTGGAGCCGGGCGAGCGGAGATTGAGTGA
CTCATGGCAGCTTTCTTGTGGAGAAGAGAACGCACTGCTGCTGTCGGCAAGTGACGCCCACAGA
GAACAGTACACTGGAAAGCTCCGAATGAGGTCCCATTCTGTGAGTCCAACTGATAGAGAAGACA
GACAACACATTACTTCAAAGATCTGTGAAGTTCATCCAAAAAAGTCTCCTATTTCTTTGGATGA
CAGTGACATTGAAGTTCGCTTGAACAGTTGGAATCTTGGGATTGAAAATCCCCGGTACCTGAGA
CAGAAGCCTCTTCCAGTTTCTCTGATGACTCCAAAGGTCAGCCTGAGGAACTCTAGCAATCTAC
ATGATGATCATTTTCTCTCTCGAATGCACGAGAAAGAGTTGGACATGAAGACAAAAATGATGGA
AGCGAAGTTCTCTGAAGAGAAACTTAAGCTGCAGAAGAAGCATGATGCCGAGGTGCAGAAGATT
TTAGAAAGAAAGAATAATGAATTAGAAGAGTTGAAAATCTTATACAAAAAGAAACAAACTGAAA
CCGAGGAGACTGTGCGAAAGCTTGAGAAGAAAGTTCAGATCCTTATACGTGACTGTCAAGTTAT
CAGAGAAACTAAAGAGAATCAGATAACCGAGCTGAAGAAGATATGTGAGCAGAGCACAGAATCT
CTGAATAATGACTGGGAAAAAAAGCTTCACAGTGCTGTAGCGGAAATGGAAAAGGAAAAATTTG
AGCTTCAAAAGCACCACACGGAGACTATTCAGGAATTGCTGGAGGACACAAATGTGCGCCTGAG
TAAAATGGAGGGGGACTACATGGTGCAGACGCAGTCCACAAACCACATGATCAAAGACCTGGAG
GGCCGTGTGCAGCAGCTGATGGGAGAAGCCGAGAACAGCAATCTACAGAGGCAGAAACTGACCC
AAGAAAAATTGGAGCTGGAAAGATGCTACCAGATAACATGTAGTGAATTACAGGAGTTAAAGAC
AAGGCAAAACTTACTACATACAGAGAAAGAACATCTTGTAAATGACTATGAGCAAAATGTGAAG
TTACTAAAAACCAAATACGATTCTGACATTAACATCCTGCGACAAGAGCATGCACTTTCCACTT
CTAAGACATCTGTTGTGATTGAAGAGCTAGAACAGAACATCCGTCAATTAAAACAGCAGGTCCA
GGAATCGGAGCTTCAGAGGAAACAGCAAGTAAAAGATCAAGAAGATAAATTTCACATGGAGAAA
AACCACTTAAAATACATCTACGAGGAAAAGGTTCATGAATTGAAGAGTGAACTTGATAAAGAGA
AAGAAGATGCTCAGAGGAAGATCCATAAATTTGAGGAAGCTTTGAAGGAGAAGGAGGAGCAGCT
CGGCCGAGTGACTGAGGTTCAGAGGTTGCAAGCCCAGCAGGCAGACGCTGCCCTGGAGGAGTTT
AAGCGGCAGGTGGAGGTGACCTCCGAGAAGGTCTACAGTGACATGAAAGAGCAGATGGAAAAGG
TGGAAGCAGACCTAAGCAGGTCCAAGTCTCTGCGTGAGAAGCAGTCCAAGGAGTTTCTGTGGCA
GCTGGAGGACGCCAGGCAGAGATACGAGCAGCAGATAGTAGAGCTGAAGCTGGAGCATGAACAG
GAGAAGACGCACCTATTACAGCAGCATAACGCAGAGAAGGATAGCCTAGTCCGAGACCATGAAC
GGGAAGTTGAAAACCTGGAGAATCAGCTTCGCGCTGCCAATATGGAGCACGAAAATCAAATTCA
AGAGTCCAAGAAACGAGACGCACAGGTTATTGCTGACATGGAGGCCCAAGTTCACAAGTTGAGG
GAAGAGTTGATCAATGTGAACTCCCACCGGAAACAGCAGTTGGTAGAACTTGGTCTTCTTCGGG
AAGAAGAAAAGCAGAGGGCTGCAAGGGACCACGAGACTGCTGTCAAGAAGCTAAAGGCTGAGTC
AGAGAGGGTGAAAATGGAGCTGAAAAAGACGCATGCCGCTGAGACTGAGATGACTCTGGAGAAG
GCCAACAGCAGGCTGAAGCAGATCGAGAAAGAATACACTCAGAAGCTTGCCAAATCTTCCCAGA
TCATAGCAGAACTTCAGACAACCATTTCCTCTCTGAAAGAGGAGAGCAGTCGGCAGCAGCTTGC
TGCAGAAAGGCGGCTCCAGGATGTTATACAAAAGTTTGAAGATGAGAAGCAGCAGCTGATTAGA
GATAATGACCAAGCAATCAAGGCTTTACAAGATGAGCTAGAAACCCGCTCTAATCAGGTGCGAA
GTGCAGAGAAAAAGTTACAGCACAAAGAACTGGAGGCACAGGAACAGATGATGTACATCCGACA
AGAATATGAAACAAAGTTCAAAGGCTTGATGCCGGCATCTCTAAGGCAGGAGCTCGAGGACACC
ATATCCTCCCTGAAGTCGCAGGTCAACTTTCTGCAAAAGAGGGCATCTATCCTTCAAGAAGAAC
TGACCACCTACCAGAGCAGAAGGTAACTGAGTGGTACAGGGTGATATATGAAAGTCATCGGGGC
TGCACTGAGGACGTCATCCAGCAGGTTTGAAGATTTGGATATTGTAAACTGTGAGATCAGTGGC
TTTTTTTTAATGCTTAAGTATAATTAAGATCATAAAAACATGCATCATCCAGACACTGGGTTGG
CTTTATTTGTGTCTACCTAAGTTATGTCTGACCATCTCCTTCCTGACTCCCATGTTTGTACTGG
AGTACATGCTGACAACTGCTTATGTTGGAGGAGTTGTCTGCTTGTGGTATGCCTTGGTGATGCT
TTGCAAGGGTCTTACAAGTTGTGAATGATAAGAATCACGATTGTAGTATCATATCAAAATGCTT
AACTTGTTCATGTTATCCCCATGTTCATTGTTCATATATTAAAATGTCATTTTTATAC

hide sequence

RefSeq Acc Id:

XM_039085646 ⟹ XP_038941574

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,645 - 94,332,418 (+)	NCBI
mRatBN7.2	10	93,366,071 - 93,833,133 (+)	NCBI

RefSeq Acc Id:

XM_039085647 ⟹ XP_038941575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,644 - 94,331,483 (+)	NCBI
mRatBN7.2	10	93,366,069 - 93,831,935 (+)	NCBI

RefSeq Acc Id:

XM_039085648 ⟹ XP_038941576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,645 - 94,331,483 (+)	NCBI
mRatBN7.2	10	93,366,071 - 93,831,935 (+)	NCBI

RefSeq Acc Id:

XM_039085650 ⟹ XP_038941578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,643 - 94,332,418 (+)	NCBI
mRatBN7.2	10	93,366,069 - 93,833,133 (+)	NCBI

RefSeq Acc Id:

XM_039085651 ⟹ XP_038941579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,645 - 94,332,418 (+)	NCBI
mRatBN7.2	10	93,366,071 - 93,833,133 (+)	NCBI

RefSeq Acc Id:

XM_039085652 ⟹ XP_038941580

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,924 - 94,332,418 (+)	NCBI
mRatBN7.2	10	93,369,439 - 93,833,133 (+)	NCBI

RefSeq Acc Id:

XM_039085653 ⟹ XP_038941581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,630 - 94,052,269 (+)	NCBI
mRatBN7.2	10	93,366,059 - 93,554,463 (+)	NCBI

RefSeq Acc Id:

XM_063268762 ⟹ XP_063124832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,640 - 94,332,418 (+)	NCBI

RefSeq Acc Id:

XM_063268763 ⟹ XP_063124833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,647 - 94,332,418 (+)	NCBI

RefSeq Acc Id:

XR_005489758

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	93,865,640 - 94,285,148 (+)	NCBI
mRatBN7.2	10	93,366,067 - 93,785,628 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099319	(Get FASTA)	NCBI Sequence Viewer
	XP_038941574	(Get FASTA)	NCBI Sequence Viewer
	XP_038941575	(Get FASTA)	NCBI Sequence Viewer
	XP_038941576	(Get FASTA)	NCBI Sequence Viewer
	XP_038941578	(Get FASTA)	NCBI Sequence Viewer
	XP_038941579	(Get FASTA)	NCBI Sequence Viewer
	XP_038941580	(Get FASTA)	NCBI Sequence Viewer
	XP_038941581	(Get FASTA)	NCBI Sequence Viewer
	XP_063124832	(Get FASTA)	NCBI Sequence Viewer
	XP_063124833	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM06448	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038168
	ENSRNOP00000038168.7
	ENSRNOP00000077677.1
	ENSRNOP00000078824.1
	ENSRNOP00000081445.1
	ENSRNOP00000084881.1
	ENSRNOP00000086298.1
	ENSRNOP00000088665.1
	ENSRNOP00000090063.1
	ENSRNOP00000095110.1

RefSeq Acc Id:

NP_001099319 ⟸ NM_001105849

- UniProtKB:

D4ABV2 (UniProtKB/TrEMBL), A6HK93 (UniProtKB/TrEMBL), A0A8I6AM07 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPAAARGGGTGKLDSSAPGLLDGPQGFETVRLWRRGVGGRVDRLLVVAPDRSMEMGSEEEKWEK
LDAEFDHFVVDMKPFVLKLPHRSERQRCALWIRKLCEPSGTGAGLMGRKNRNLYAKLLLHMLRR
GVLEGPFTHRPEPGTLKVLPSYMSIYFDEPNSAQSKDSSPEKLPDWVMGELEPGERRLSDSWQL
SCGEENALLLSASDAHREQYTGKLRMRSHSVSPTDREDRQHITSKICEVHPKKSPISLDDSDIE
VRLNSWNLGIENPRYLRQKPLPVSLMTPKVSLRNSSNLHDDHFLSRMHEKELDMKTKMMEAKFS
EEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETK
ENQITELKKICEQSTESLNNDWEKKLHSAVAEMEKEKFELQKHHTETIQELLEDTNVRLSKMEG
DYMVQTQSTNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNL
LHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESEL
QRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVT
EVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDA
RQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKK
RDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVK
MELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERR
LQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYET
KFKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQSRR

hide sequence

RefSeq Acc Id:

ENSRNOP00000038168 ⟸ ENSRNOT00000037067

RefSeq Acc Id:	XP_038941581 ⟸ XM_039085653
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038941578 ⟸ XM_039085650
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AM07 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941575 ⟸ XM_039085647
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AM07 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941574 ⟸ XM_039085646
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AM07 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941579 ⟸ XM_039085651
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AM07 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941576 ⟸ XM_039085648
- Peptide Label:	isoform X3
- UniProtKB:	D4ABV2 (UniProtKB/TrEMBL), A6HK93 (UniProtKB/TrEMBL), A0A8I6AM07 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941580 ⟸ XM_039085652
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AM07 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000095110 ⟸ ENSRNOT00000094127

RefSeq Acc Id:

ENSRNOP00000086298 ⟸ ENSRNOT00000116903

RefSeq Acc Id:

ENSRNOP00000078824 ⟸ ENSRNOT00000108519

RefSeq Acc Id:

ENSRNOP00000081445 ⟸ ENSRNOT00000094758

RefSeq Acc Id:

ENSRNOP00000088665 ⟸ ENSRNOT00000103396

RefSeq Acc Id:

ENSRNOP00000077677 ⟸ ENSRNOT00000110501

RefSeq Acc Id:

ENSRNOP00000090063 ⟸ ENSRNOT00000104957

RefSeq Acc Id:

ENSRNOP00000084881 ⟸ ENSRNOT00000103166

RefSeq Acc Id:	XP_063124832 ⟸ XM_063268762
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063124833 ⟸ XM_063268763
- Peptide Label:	isoform X8

Protein Domains

DUF4485

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ABV2-F1-model_v2	AlphaFold	D4ABV2	1-1006	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697855

Promoter ID:

EPDNEW_R8380

Type:

multiple initiation site

Name:

Cep112_1

Description:

centrosomal protein 112

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	96,663,817 - 96,663,877	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564168	AgrOrtholog
BioCyc Gene	G2FUF-22878	BioCyc
Ensembl Genes	ENSRNOG00000024557	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037067	ENTREZGENE
	ENSRNOT00000037067.7	UniProtKB/TrEMBL
	ENSRNOT00000094127.1	UniProtKB/TrEMBL
	ENSRNOT00000094758.1	UniProtKB/TrEMBL
	ENSRNOT00000103166.1	UniProtKB/TrEMBL
	ENSRNOT00000103396.1	UniProtKB/TrEMBL
	ENSRNOT00000104957.1	UniProtKB/TrEMBL
	ENSRNOT00000108519.1	UniProtKB/TrEMBL
	ENSRNOT00000110501.1	UniProtKB/TrEMBL
	ENSRNOT00000116903.1	UniProtKB/TrEMBL
InterPro	DUF4485	UniProtKB/TrEMBL
KEGG Report	rno:287776	UniProtKB/TrEMBL
NCBI Gene	287776	ENTREZGENE
PANTHER	CENTROSOMAL PROTEIN OF 112 KDA	UniProtKB/TrEMBL
	CENTROSOMAL PROTEIN OF 112 KDA	UniProtKB/TrEMBL
Pfam	DUF4485	UniProtKB/TrEMBL
PhenoGen	Cep112	PhenoGen
RatGTEx	ENSRNOG00000024557	RatGTEx
UniProt	A0A8I5Y9N9_RAT	UniProtKB/TrEMBL
	A0A8I5ZS92_RAT	UniProtKB/TrEMBL
	A0A8I5ZYZ7_RAT	UniProtKB/TrEMBL
	A0A8I6A7K4_RAT	UniProtKB/TrEMBL
	A0A8I6AM07	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G2E2_RAT	UniProtKB/TrEMBL
	A0A8I6GHB3_RAT	UniProtKB/TrEMBL
	A0A8I6GHW6_RAT	UniProtKB/TrEMBL
	A6HK93	ENTREZGENE, UniProtKB/TrEMBL
	D4ABV2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-05	Cep112	centrosomal protein 112	Cep112	centrosomal protein 112kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-29	Cep112	centrosomal protein 112kDa	Ccdc46	coiled-coil domain containing 46	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Ccdc46	coiled-coil domain containing 46	RGD1564168_predicted	similar to hypothetical protein MGC33887 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564168_predicted	similar to hypothetical protein MGC33887 (predicted)	LOC287776	similar to hypothetical protein MGC33887	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC287776	similar to hypothetical protein MGC33887			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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