Vwa3b (von Willebrand factor A domain containing 3B) - Rat Genome Database

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Gene: Vwa3b (von Willebrand factor A domain containing 3B) Rattus norvegicus
Analyze
Symbol: Vwa3b
Name: von Willebrand factor A domain containing 3B
RGD ID: 1562560
Description: Predicted to be located in cytosol and nucleoplasm. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 22. Orthologous to human VWA3B (von Willebrand factor A domain containing 3B); INTERACTS WITH 6-propyl-2-thiouracil; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC501126; MGC156769; similar to hypothetical protein MGC26733; von Willebrand factor A domain-containing protein 3B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,746,307 - 46,915,436 (+)NCBIGRCr8
mRatBN7.2939,249,523 - 39,419,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,250,430 - 39,419,611 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0943,607,066 - 43,779,466 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,607,669 - 43,779,463 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0943,253,497 - 43,425,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,962,036 - 36,125,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera937,007,813 - 37,176,976 (+)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Vwa3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,746,307 - 46,915,436 (+)NCBIGRCr8
mRatBN7.2939,249,523 - 39,419,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,250,430 - 39,419,611 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0943,607,066 - 43,779,466 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,607,669 - 43,779,463 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0943,253,497 - 43,425,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,962,036 - 36,125,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera937,007,813 - 37,176,976 (+)NCBICelera
Cytogenetic Map9q21NCBI
VWA3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,087,167 - 98,330,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,087,116 - 98,313,299 (+)EnsemblGRCh38hg38GRCh38
GRCh37298,703,630 - 98,929,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,070,027 - 98,295,842 (+)NCBINCBI36Build 36hg18NCBI36
Celera292,907,511 - 93,133,132 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef292,468,832 - 92,694,531 (+)NCBIHuRef
CHM1_1298,707,922 - 98,933,729 (+)NCBICHM1_1
T2T-CHM13v2.0298,545,383 - 98,788,821 (+)NCBIT2T-CHM13v2.0
Vwa3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,068,372 - 37,226,689 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,065,677 - 37,226,694 (+)EnsemblGRCm39 Ensembl
GRCm38137,029,158 - 37,187,608 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,026,596 - 37,187,613 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,086,149 - 37,244,122 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,098,390 - 37,132,150 (+)NCBIMGSCv36mm8
Celera136,804,738 - 36,965,147 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
Vwa3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,658,197 - 4,850,336 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,658,088 - 4,850,277 (+)NCBIChiLan1.0ChiLan1.0
VWA3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21230,127,506 - 30,354,109 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A30,130,268 - 30,356,891 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,995,476 - 101,221,328 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,001,077 - 99,226,175 (+)NCBIpanpan1.1PanPan1.1panPan2
VWA3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,279,047 - 44,508,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1044,305,262 - 44,508,139 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1044,201,547 - 44,430,816 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01045,152,236 - 45,381,567 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1045,178,428 - 45,381,569 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,862,497 - 45,091,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01045,153,560 - 45,383,065 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01045,329,205 - 45,558,780 (-)NCBIUU_Cfam_GSD_1.0
Vwa3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,027,440 - 84,213,494 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367441,280,438 - 1,466,425 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VWA3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,950,591 - 56,171,718 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,949,534 - 56,173,597 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,552,120 - 58,716,317 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VWA3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1141,804,752 - 2,039,785 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl141,812,852 - 1,985,116 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041169,297,543 - 169,559,074 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vwa3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,204,463 - 3,421,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247493,106,165 - 3,421,679 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vwa3b
925 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:58
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000052054
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat

Markers in Region
RH129611  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2939,332,346 - 39,332,548 (+)MAPPERmRatBN7.2
Rnor_6.0943,689,346 - 43,689,547NCBIRnor6.0
Rnor_5.0943,335,037 - 43,335,238UniSTSRnor5.0
RGSC_v3.4936,038,777 - 36,038,978UniSTSRGSC3.4
Celera937,089,544 - 37,089,745UniSTS
RH 3.4 Map9366.8UniSTS
Cytogenetic Map9q21UniSTS
RH143282  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2939,310,409 - 39,310,548 (+)MAPPERmRatBN7.2
Rnor_6.0943,667,543 - 43,667,681NCBIRnor6.0
Rnor_5.0943,313,234 - 43,313,372UniSTSRnor5.0
RGSC_v3.4936,015,789 - 36,015,927UniSTSRGSC3.4
Celera937,068,237 - 37,068,375UniSTS
RH 3.4 Map9369.7UniSTS
Cytogenetic Map9q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 41 113 87 86 55 25 55 6 206 89 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_589219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000023617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,250,548 - 39,296,628 (+)Ensembl
Rnor_6.0 Ensembl943,613,988 - 43,635,957 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000052054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,380,215 - 39,419,604 (+)Ensembl
Rnor_6.0 Ensembl943,740,069 - 43,779,463 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,383,254 - 39,419,611 (+)Ensembl
Rnor_6.0 Ensembl943,740,067 - 43,779,463 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl943,761,348 - 43,778,724 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,250,548 - 39,418,877 (+)Ensembl
Rnor_6.0 Ensembl943,607,669 - 43,779,078 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl943,740,079 - 43,766,442 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,250,548 - 39,293,649 (+)Ensembl
Rnor_6.0 Ensembl943,614,018 - 43,636,046 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101179   ⟹   ENSRNOP00000079290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,250,430 - 39,418,877 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107180   ⟹   ENSRNOP00000089052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,250,548 - 39,418,877 (+)Ensembl
RefSeq Acc Id: NM_001419961   ⟹   NP_001406890
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,342 - 46,915,436 (+)NCBI
mRatBN7.2939,250,511 - 39,419,614 (+)NCBI
RefSeq Acc Id: XM_039084535   ⟹   XP_038940463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,307 - 46,865,134 (+)NCBI
mRatBN7.2939,249,531 - 39,369,300 (+)NCBI
RefSeq Acc Id: XM_063267597   ⟹   XP_063123667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,315 - 46,915,431 (+)NCBI
RefSeq Acc Id: XM_063267598   ⟹   XP_063123668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,309 - 46,915,431 (+)NCBI
RefSeq Acc Id: XM_063267599   ⟹   XP_063123669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,311 - 46,863,629 (+)NCBI
RefSeq Acc Id: XR_001839789
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,316 - 46,915,431 (+)NCBI
mRatBN7.2939,249,614 - 39,419,611 (+)NCBI
Rnor_6.0943,607,069 - 43,779,464 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001839791
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,310 - 46,915,431 (+)NCBI
mRatBN7.2939,249,610 - 39,419,611 (+)NCBI
Rnor_6.0943,607,068 - 43,779,464 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005489105
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,310 - 46,915,431 (+)NCBI
mRatBN7.2939,249,614 - 39,419,611 (+)NCBI
RefSeq Acc Id: XR_005489106
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,791,209 - 46,915,431 (+)NCBI
mRatBN7.2939,295,358 - 39,419,611 (+)NCBI
RefSeq Acc Id: XR_005489107
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,836,594 - 46,915,431 (+)NCBI
mRatBN7.2939,340,761 - 39,419,611 (+)NCBI
RefSeq Acc Id: XR_010054625
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,316 - 46,915,431 (+)NCBI
RefSeq Acc Id: XR_010054626
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,309 - 46,915,431 (+)NCBI
RefSeq Acc Id: XR_010054627
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,309 - 46,915,431 (+)NCBI
RefSeq Acc Id: XR_594349
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,310 - 46,915,431 (+)NCBI
mRatBN7.2939,249,613 - 39,419,611 (+)NCBI
Rnor_6.0943,607,069 - 43,779,464 (+)NCBI
Sequence:
RefSeq Acc Id: XP_038940463   ⟸   XM_039084535
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000089052   ⟸   ENSRNOT00000107180
Ensembl Acc Id: ENSRNOP00000079290   ⟸   ENSRNOT00000101179
RefSeq Acc Id: NP_001406890   ⟸   NM_001419961
RefSeq Acc Id: XP_063123668   ⟸   XM_063267598
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123669   ⟸   XM_063267599
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063123667   ⟸   XM_063267597
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZKI0 (UniProtKB/TrEMBL)
Protein Domains
DUF4537   VWFA

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562560 AgrOrtholog
BioCyc Gene G2FUF-27795 BioCyc
Ensembl Genes ENSRNOG00000023566 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023617.6 UniProtKB/TrEMBL
  ENSRNOT00000052054.5 UniProtKB/TrEMBL
  ENSRNOT00000077566.2 UniProtKB/TrEMBL
  ENSRNOT00000088239.2 UniProtKB/TrEMBL
  ENSRNOT00000090492.2 UniProtKB/TrEMBL
  ENSRNOT00000101179.1 UniProtKB/TrEMBL
  ENSRNOT00000107180.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro DUF4537 UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene 501126 ENTREZGENE
PANTHER VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B UniProtKB/TrEMBL
  VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B UniProtKB/TrEMBL
Pfam DUF4537 UniProtKB/TrEMBL
  VWA_3 UniProtKB/TrEMBL
PhenoGen Vwa3b PhenoGen
PROSITE VWFA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023566 RatGTEx
SMART VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A0A8I5Y6E7_RAT UniProtKB/TrEMBL
  A0A8I5ZKI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMT1_RAT UniProtKB/TrEMBL
  A0A8I6A6E4_RAT UniProtKB/TrEMBL
  A0A8I6AAL8_RAT UniProtKB/TrEMBL
  A0A8I6B473_RAT UniProtKB/TrEMBL
  Q5XIN8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-12-15 Vwa3b  von Willebrand factor A domain containing 3B  LOC501126  similar to hypothetical protein MGC26733  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC501126  similar to hypothetical protein MGC26733      Symbol and Name status set to provisional 70820 PROVISIONAL