Carmil2 (capping protein regulator and myosin 1 linker 2) - Rat Genome Database

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Gene: Carmil2 (capping protein regulator and myosin 1 linker 2) Rattus norvegicus
Analyze
Symbol: Carmil2
Name: capping protein regulator and myosin 1 linker 2
RGD ID: 1562390
Description: Predicted to enable phospholipid binding activity. Predicted to be involved in several processes, including actin filament network formation; positive regulation of cellular component organization; and wound healing, spreading of cells. Predicted to act upstream of or within several processes, including T cell receptor signaling pathway; positive regulation of T cell activation; and positive regulation of cytokine production. Predicted to be located in several cellular components, including cytoskeleton; immunological synapse; and macropinosome. Predicted to be part of F-actin capping protein complex. Predicted to be active in lamellipodium and plasma membrane. Human ortholog(s) of this gene implicated in immunodeficiency 58. Orthologous to human CARMIL2 (capping protein regulator and myosin 1 linker 2); INTERACTS WITH alpha-Zearalanol; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: capping protein, Arp2/3 and myosin-I linker protein 2; LOC307797; RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing; RGD1562390; Rltpr; similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,481,911 - 50,496,672 (+)NCBIGRCr8
mRatBN7.21933,571,255 - 33,586,783 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,574,257 - 33,586,965 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01937,652,383 - 37,665,333 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,652,969 - 37,668,019 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,519,170 - 48,532,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,515,397 - 35,530,595 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1933,001,781 - 33,014,730 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19846667   PMID:19946888   PMID:23793062   PMID:24097820   PMID:26466680   PMID:26578515  


Genomics

Comparative Map Data
Carmil2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,481,911 - 50,496,672 (+)NCBIGRCr8
mRatBN7.21933,571,255 - 33,586,783 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,574,257 - 33,586,965 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01937,652,383 - 37,665,333 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,652,969 - 37,668,019 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,519,170 - 48,532,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,515,397 - 35,530,595 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1933,001,781 - 33,014,730 (+)NCBICelera
Cytogenetic Map19q12NCBI
CARMIL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,645,144 - 67,657,569 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,644,988 - 67,657,569 (+)EnsemblGRCh38hg38GRCh38
GRCh371667,679,047 - 67,691,472 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,236,531 - 66,248,973 (+)NCBINCBI36Build 36hg18NCBI36
Celera1652,187,520 - 52,199,962 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,551,938 - 53,564,384 (+)NCBIHuRef
CHM1_11669,086,723 - 69,099,185 (+)NCBICHM1_1
T2T-CHM13v2.01673,439,913 - 73,452,337 (+)NCBIT2T-CHM13v2.0
Carmil2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,412,642 - 106,424,827 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,412,906 - 106,424,819 (+)EnsemblGRCm39 Ensembl
GRCm388105,686,010 - 105,698,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,686,274 - 105,698,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv378108,214,806 - 108,222,065 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,580,035 - 108,587,294 (+)NCBIMGSCv36mm8
Celera8109,915,749 - 109,923,083 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Carmil2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,025,460 - 9,037,580 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,025,409 - 9,037,942 (-)NCBIChiLan1.0ChiLan1.0
CARMIL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,173,341 - 77,185,751 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,085,805 - 83,098,218 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,989,040 - 48,001,455 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,378,283 - 67,390,760 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,378,353 - 67,390,709 (+)Ensemblpanpan1.1panPan2
CARMIL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,792,683 - 81,804,274 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,792,155 - 81,804,152 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,782,441 - 81,794,868 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,227,854 - 82,240,296 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,227,874 - 82,239,343 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,054,178 - 82,066,594 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,735,709 - 81,748,107 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,378,251 - 82,390,674 (-)NCBIUU_Cfam_GSD_1.0
Carmil2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,539,934 - 41,553,241 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,035,994 - 18,049,129 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,036,233 - 18,049,144 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CARMIL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,265,135 - 28,277,641 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,265,130 - 28,277,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,490,372 - 25,498,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CARMIL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,787,069 - 59,801,615 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,787,120 - 59,801,122 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,540,823 - 22,553,913 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Carmil2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,692,225 - 18,704,476 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,692,179 - 18,704,952 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Carmil2
52 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:345
Count of miRNA genes:94
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000033136, ENSRNOT00000041970, ENSRNOT00000066229
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat

Markers in Region
RH128404  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,586,774 - 33,587,057 (+)MAPPERmRatBN7.2
Rnor_6.01937,665,325 - 37,665,607NCBIRnor6.0
Rnor_5.01948,532,029 - 48,532,311UniSTSRnor5.0
RGSC_v3.41935,530,587 - 35,530,869UniSTSRGSC3.4
Celera1933,014,722 - 33,015,004UniSTS
RH 3.4 Map19359.92UniSTS
Cytogenetic Map19q12UniSTS
RH132532  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,586,484 - 33,586,757 (+)MAPPERmRatBN7.2
Rnor_6.01937,665,035 - 37,665,307NCBIRnor6.0
Rnor_5.01948,531,739 - 48,532,011UniSTSRnor5.0
RGSC_v3.41935,530,297 - 35,530,569UniSTSRGSC3.4
Celera1933,014,432 - 33,014,704UniSTS
RH 3.4 Map19358.3UniSTS
Cytogenetic Map19q12UniSTS
RH144673  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,584,976 - 33,585,160 (+)MAPPERmRatBN7.2
Rnor_6.01937,663,527 - 37,663,710NCBIRnor6.0
Rnor_5.01948,530,231 - 48,530,414UniSTSRnor5.0
RGSC_v3.41935,528,789 - 35,528,972UniSTSRGSC3.4
Celera1933,012,924 - 33,013,107UniSTS
RH 3.4 Map19295.0UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000041970   ⟹   ENSRNOP00000048530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,574,257 - 33,586,965 (+)Ensembl
Rnor_6.0 Ensembl1937,652,969 - 37,668,019 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103235   ⟹   ENSRNOP00000088406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,574,257 - 33,586,965 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110285   ⟹   ENSRNOP00000092182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,574,257 - 33,586,965 (+)Ensembl
RefSeq Acc Id: XM_039098220   ⟹   XP_038954148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,485,029 - 50,496,672 (+)NCBI
mRatBN7.21933,575,750 - 33,586,783 (+)NCBI
RefSeq Acc Id: XM_063278647   ⟹   XP_063134717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,483,835 - 50,496,672 (+)NCBI
RefSeq Acc Id: XM_063278648   ⟹   XP_063134718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,483,831 - 50,496,672 (+)NCBI
RefSeq Acc Id: XM_063278649   ⟹   XP_063134719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,483,844 - 50,496,672 (+)NCBI
RefSeq Acc Id: XM_063278650   ⟹   XP_063134720
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,481,911 - 50,493,954 (+)NCBI
RefSeq Acc Id: XM_063278651   ⟹   XP_063134721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,481,911 - 50,493,962 (+)NCBI
RefSeq Acc Id: XM_063278652   ⟹   XP_063134722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,481,911 - 50,492,682 (+)NCBI
RefSeq Acc Id: XR_010060204
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,481,911 - 50,495,504 (+)NCBI
Ensembl Acc Id: ENSRNOP00000048530   ⟸   ENSRNOT00000041970
RefSeq Acc Id: XP_038954148   ⟸   XM_039098220
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A9C8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092182   ⟸   ENSRNOT00000110285
Ensembl Acc Id: ENSRNOP00000088406   ⟸   ENSRNOT00000103235
RefSeq Acc Id: XP_063134721   ⟸   XM_063278651
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063134720   ⟸   XM_063278650
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063134722   ⟸   XM_063278652
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063134718   ⟸   XM_063278648
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063134717   ⟸   XM_063278647
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063134719   ⟸   XM_063278649
- Peptide Label: isoform X3
Protein Domains
CARMIL C-terminal   CARMIL pleckstrin homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZC15-F1-model_v2 AlphaFold D3ZC15 1-1368 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701101
Promoter ID:EPDNEW_R11606
Type:initiation region
Name:Carmil2_1
Description:capping protein regulator and myosin 1 linker 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01937,653,017 - 37,653,077EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562390 AgrOrtholog
BioCyc Gene G2FUF-5819 BioCyc
Ensembl Genes ENSRNOG00000024452 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041970.7 UniProtKB/TrEMBL
  ENSRNOT00000103235.1 UniProtKB/TrEMBL
  ENSRNOT00000110285.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro CARMIL_C UniProtKB/TrEMBL
  CARMIL_PH UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PP1-Reg/Actin-Interact_Protein UniProtKB/TrEMBL
NCBI Gene 307797 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT, ISOFORM F-RELATED UniProtKB/TrEMBL
  PTHR24112:SF32 UniProtKB/TrEMBL
Pfam Carm_PH UniProtKB/TrEMBL
  CARMIL_C UniProtKB/TrEMBL
  LRR_6 UniProtKB/TrEMBL
PhenoGen Carmil2 PhenoGen
RatGTEx ENSRNOG00000024452 RatGTEx
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A8I6A9C8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AF10 ENTREZGENE, UniProtKB/TrEMBL
  D3ZC15 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-27 Carmil2  capping protein regulator and myosin 1 linker 2  Rltpr  RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-25 Rltpr  RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing  RGD1562390  similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562390  similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein   RGD1562390_predicted  similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-10 RGD1562390_predicted  similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein (predicted)      Name updated 1299863 APPROVED
2006-03-07 RGD1562390_predicted  similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein (predicted)  LOC307797  similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307797  similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein      Symbol and Name status set to provisional 70820 PROVISIONAL