CCDC91 (coiled-coil domain containing 91) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: CCDC91 (coiled-coil domain containing 91) Sus scrofa
Analyze
Symbol: CCDC91
Name: coiled-coil domain containing 91
RGD ID: 14265513
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN Golgi to lysosome transport (inferred); Golgi vesicle transport (inferred); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN cytosol (inferred); Golgi apparatus (inferred); trans-Golgi network (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: coiled-coil domain-containing protein 91
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl545,138,057 - 45,525,650 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1545,138,162 - 45,525,661 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2548,837,142 - 48,878,336 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:12808037   PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
CCDC91
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl545,138,057 - 45,525,650 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1545,138,162 - 45,525,661 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2548,837,142 - 48,878,336 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC91
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,190,456 - 28,550,166 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,133,249 - 28,581,511 (+)Ensemblhg38GRCh38
GRCh371228,343,389 - 28,703,099 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361228,301,400 - 28,594,366 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1233,556,106 - 33,849,062 (+)NCBICelera
Cytogenetic Map12p11.22NCBI
HuRef1228,179,425 - 28,472,510 (+)NCBIHuRef
CHM1_11228,375,515 - 28,668,272 (+)NCBICHM1_1
T2T-CHM13v2.01228,062,559 - 28,422,616 (+)NCBIT2T-CHM13v2.0
Ccdc91
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396147,377,322 - 147,534,110 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6147,377,326 - 147,534,110 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386147,475,871 - 147,632,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6147,475,828 - 147,632,612 (+)Ensemblmm10GRCm38
MGSCv376147,424,393 - 147,581,134 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366147,433,041 - 147,589,782 (+)NCBIMGSCv36mm8
Celera6150,517,430 - 150,681,959 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.22NCBI
Ccdc91
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84182,132,931 - 182,304,948 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4182,132,942 - 182,304,948 (+)EnsemblGRCr8
mRatBN7.24180,402,327 - 180,574,364 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4180,402,376 - 180,574,364 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4186,685,689 - 186,856,364 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04182,470,232 - 182,640,907 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04181,090,664 - 181,261,351 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,873,465 - 182,043,593 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,874,861 - 182,043,593 (+)Ensemblrn6Rnor6.0
Rnor_5.04246,021,504 - 246,189,263 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44185,103,274 - 185,258,770 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4168,885,253 - 169,056,949 (+)NCBICelera
RGSC_v3.14185,348,397 - 185,503,894 (+)NCBI
Cytogenetic Map4q44NCBI
Ccdc91
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555056,266,918 - 6,535,059 (-)Ensembl
ChiLan1.0NW_0049555056,269,667 - 6,613,191 (-)NCBIChiLan1.0ChiLan1.0
CCDC91
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21068,237,448 - 68,625,817 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11268,233,842 - 68,628,769 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01257,678,990 - 58,123,663 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11260,384,048 - 60,741,781 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1260,385,041 - 60,676,959 (-)EnsemblpanPan2panpan1.1
CCDC91
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12719,234,731 - 19,579,901 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2719,229,925 - 19,579,817 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2726,825,592 - 27,151,728 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02719,441,434 - 19,773,606 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2719,435,677 - 19,773,599 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12719,254,969 - 19,580,998 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02719,281,701 - 19,607,288 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02726,977,430 - 27,310,304 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc91
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494581,197,835 - 81,520,217 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936760486,621 - 735,719 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936760413,066 - 735,508 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC91
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11127,913,958 - 28,267,606 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1127,914,739 - 28,267,599 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660696,773,329 - 7,131,452 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc91
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247787,313,233 - 7,674,279 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247787,312,565 - 7,693,256 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc91
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v165,137,049 - 5,307,959 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in CCDC91
7191 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000000586   ⟹   ENSSSCP00000000573
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,138,045 - 45,525,650 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000022730   ⟹   ENSSSCP00000028082
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,138,049 - 45,525,650 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000027192   ⟹   ENSSSCP00000019584
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,138,057 - 45,525,650 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000052045   ⟹   ENSSSCP00000059296
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,138,057 - 45,525,650 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000052773   ⟹   ENSSSCP00000032012
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,166,099 - 45,525,650 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000059615   ⟹   ENSSSCP00000040192
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,166,103 - 45,525,634 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000064471   ⟹   ENSSSCP00000044653
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,166,101 - 45,525,630 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000069766   ⟹   ENSSSCP00000066623
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,162,141 - 45,525,649 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000075921   ⟹   ENSSSCP00000067163
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,199,277 - 45,525,634 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000085715   ⟹   ENSSSCP00000061101
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl545,162,141 - 45,525,649 (-)Ensembl
RefSeq Acc Id: NM_001244526   ⟹   NP_001231455
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1545,166,274 - 45,525,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090990   ⟹   XP_020946649
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1545,166,099 - 45,477,394 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090991   ⟹   XP_020946650
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1545,166,099 - 45,525,300 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090992   ⟹   XP_020946651
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1545,138,162 - 45,525,661 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090993   ⟹   XP_020946652
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1545,180,719 - 45,525,661 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090994   ⟹   XP_020946653
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1545,138,164 - 45,525,661 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090995   ⟹   XP_020946654
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1545,138,163 - 45,525,661 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020946651   ⟸   XM_021090992
- Peptide Label: isoform X2
- UniProtKB: A0A8D0ILI4 (UniProtKB/TrEMBL),   A0A8D1XTN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946654   ⟸   XM_021090995
- Peptide Label: isoform X5
- UniProtKB: A0A287BS84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946653   ⟸   XM_021090994
- Peptide Label: isoform X4
- UniProtKB: A0A287BS84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946650   ⟸   XM_021090991
- Peptide Label: isoform X1
- UniProtKB: A0A5G2QGH7 (UniProtKB/TrEMBL),   A0A8D0RCW9 (UniProtKB/TrEMBL),   A0A8D0U0N0 (UniProtKB/TrEMBL),   A0A8D0IUP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946649   ⟸   XM_021090990
- Peptide Label: isoform X1
- UniProtKB: A0A5G2QGH7 (UniProtKB/TrEMBL),   A0A8D0RCW9 (UniProtKB/TrEMBL),   A0A8D0U0N0 (UniProtKB/TrEMBL),   A0A8D0IUP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231455   ⟸   NM_001244526
- UniProtKB: A0A8D0U0N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946652   ⟸   XM_021090993
- Peptide Label: isoform X3
- UniProtKB: A0A287BS84 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000044653   ⟸   ENSSSCT00000064471
Ensembl Acc Id: ENSSSCP00000000573   ⟸   ENSSSCT00000000586
Ensembl Acc Id: ENSSSCP00000067163   ⟸   ENSSSCT00000075921
Ensembl Acc Id: ENSSSCP00000040192   ⟸   ENSSSCT00000059615
Ensembl Acc Id: ENSSSCP00000066623   ⟸   ENSSSCT00000069766
Ensembl Acc Id: ENSSSCP00000059296   ⟸   ENSSSCT00000052045
Ensembl Acc Id: ENSSSCP00000019584   ⟸   ENSSSCT00000027192
Ensembl Acc Id: ENSSSCP00000032012   ⟸   ENSSSCT00000052773
Ensembl Acc Id: ENSSSCP00000061101   ⟸   ENSSSCT00000085715
Ensembl Acc Id: ENSSSCP00000028082   ⟸   ENSSSCT00000022730


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024232 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015030577 UniProtKB/TrEMBL
  ENSSSCG00025025108 UniProtKB/TrEMBL
  ENSSSCG00045024341 UniProtKB/TrEMBL
  ENSSSCG00050035312 UniProtKB/TrEMBL
  ENSSSCG00055013086 UniProtKB/TrEMBL
  ENSSSCG00060010168 UniProtKB/TrEMBL
  ENSSSCG00065017892 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052045 ENTREZGENE
  ENSSSCT00000052045.3 UniProtKB/TrEMBL
  ENSSSCT00000059615.3 UniProtKB/TrEMBL
  ENSSSCT00000069766.2 UniProtKB/TrEMBL
  ENSSSCT00000085715 ENTREZGENE
  ENSSSCT00000085715.1 UniProtKB/TrEMBL
  ENSSSCT00015040634.1 UniProtKB/TrEMBL
  ENSSSCT00015040931.1 UniProtKB/TrEMBL
  ENSSSCT00015041203.1 UniProtKB/TrEMBL
  ENSSSCT00015041747.1 UniProtKB/TrEMBL
  ENSSSCT00015041949.1 UniProtKB/TrEMBL
  ENSSSCT00015042196.1 UniProtKB/TrEMBL
  ENSSSCT00015042445.1 UniProtKB/TrEMBL
  ENSSSCT00015042703.1 UniProtKB/TrEMBL
  ENSSSCT00015042788.1 UniProtKB/TrEMBL
  ENSSSCT00025033934.1 UniProtKB/TrEMBL
  ENSSSCT00025034140.1 UniProtKB/TrEMBL
  ENSSSCT00025034282.1 UniProtKB/TrEMBL
  ENSSSCT00025034423.1 UniProtKB/TrEMBL
  ENSSSCT00025034568.1 UniProtKB/TrEMBL
  ENSSSCT00025034785.1 UniProtKB/TrEMBL
  ENSSSCT00045041499.1 UniProtKB/TrEMBL
  ENSSSCT00045041658.1 UniProtKB/TrEMBL
  ENSSSCT00050047462.1 UniProtKB/TrEMBL
  ENSSSCT00055025730.1 UniProtKB/TrEMBL
  ENSSSCT00055025810.1 UniProtKB/TrEMBL
  ENSSSCT00060013183.1 UniProtKB/TrEMBL
  ENSSSCT00060013189.1 UniProtKB/TrEMBL
  ENSSSCT00065023765.1 UniProtKB/TrEMBL
  ENSSSCT00065023770.1 UniProtKB/TrEMBL
InterPro CCDC91 UniProtKB/TrEMBL
NCBI Gene CCDC91 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 91 UniProtKB/TrEMBL
  PTHR35072 UniProtKB/TrEMBL
UniProt A0A287BS84 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QGH7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ILI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IUP3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IVX9_PIG UniProtKB/TrEMBL
  A0A8D0LK22_PIG UniProtKB/TrEMBL
  A0A8D0NB68_PIG UniProtKB/TrEMBL
  A0A8D0NBG3_PIG UniProtKB/TrEMBL
  A0A8D0NCD4_PIG UniProtKB/TrEMBL
  A0A8D0ND23_PIG UniProtKB/TrEMBL
  A0A8D0NGN9_PIG UniProtKB/TrEMBL
  A0A8D0RCW9 ENTREZGENE
  A0A8D0RCZ2_PIG UniProtKB/TrEMBL
  A0A8D0U0N0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ULW0_PIG UniProtKB/TrEMBL
  A0A8D1XQE1_PIG UniProtKB/TrEMBL
  A0A8D1XTN2 ENTREZGENE, UniProtKB/TrEMBL
  I3L6D3_PIG UniProtKB/TrEMBL
  I3LVD0_PIG UniProtKB/TrEMBL
UniProt Secondary A0A286ZKC4 UniProtKB/TrEMBL
  A0A287A8S1 UniProtKB/TrEMBL
  A0A5G2QP03 UniProtKB/TrEMBL
  A0A8D0RCW9 UniProtKB/TrEMBL
VGNC ID VGNC:86329 ENTREZGENE