Or6c206 (olfactory receptor family 6 subfamily C member 206) - Rat Genome Database

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Gene: Or6c206 (olfactory receptor family 6 subfamily C member 206) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or6c206
Name: olfactory receptor family 6 subfamily C member 206
RGD ID: 1333582
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: LOC108349829; olfactory receptor 6C3-like; olfactory receptor 905; olfactory receptor gene Olr905; olfactory receptor Olr905; olfactory receptor Olr905-like; Olr905
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr872,474,621 - 2,475,559 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl72,474,621 - 2,475,559 (+)EnsemblGRCr8
mRatBN7.271,846,126 - 1,847,064 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl71,844,268 - 1,848,242 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl71,821,264 - 1,822,202 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx74,672,550 - 4,673,488 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.076,548,197 - 6,549,135 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.076,832,950 - 6,833,888 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.075,450,324 - 5,451,262 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.075,560,095 - 5,561,033 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.473,582,949 - 3,583,887NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.173,582,948 - 3,583,887NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Or6c206
5 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:23
Interacting mature miRNAs:23
Transcripts:ENSRNOT00000072832
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000040030   ⟹   ENSRNOP00000044245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl71,821,264 - 1,822,202 (+)Ensembl
Rnor_6.0 Ensembl75,450,324 - 5,451,262 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000072832   ⟹   ENSRNOP00000065687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl111,758,230 - 11,759,168 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095021   ⟹   ENSRNOP00000081999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl71,844,273 - 1,847,571 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098566   ⟹   ENSRNOP00000095561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl72,474,621 - 2,475,559 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113424   ⟹   ENSRNOP00000077043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl71,844,268 - 1,848,242 (+)Ensembl
RefSeq Acc Id: NM_001001355   ⟹   NP_001001355
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr872,474,621 - 2,475,559 (+)NCBI
mRatBN7.271,846,126 - 1,847,064 (+)NCBI
Rnor_6.075,450,324 - 5,451,262 (-)NCBI
Rnor_5.075,560,095 - 5,561,033 (-)NCBI
RGSC_v3.473,582,949 - 3,583,887 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001001355 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000095561
  ENSRNOP00000095561.2
RefSeq Acc Id: NP_001001355   ⟸   NM_001001355
- UniProtKB: A0A8I5Y731 (UniProtKB/TrEMBL),   A0A8I5ZU44 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000044245   ⟸   ENSRNOT00000040030
Ensembl Acc Id: ENSRNOP00000065687   ⟸   ENSRNOT00000072832
Ensembl Acc Id: ENSRNOP00000081999   ⟸   ENSRNOT00000095021
Ensembl Acc Id: ENSRNOP00000077043   ⟸   ENSRNOT00000113424
Ensembl Acc Id: ENSRNOP00000095561   ⟸   ENSRNOT00000098566

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXS3-F1-model_v2 AlphaFold D3ZXS3 1-312 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333582 AgrOrtholog
BioCyc Gene G2FUF-35303 BioCyc
Ensembl Genes ENSRNOG00000047193 Ensembl
  ENSRNOG00000048201 Ensembl
  ENSRNOG00000065551 Ensembl
  ENSRNOG00000083423 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000098566 ENTREZGENE
  ENSRNOT00000098566.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/TrEMBL
NCBI Gene 288797 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or6c206 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047193 RatGTEx
  ENSRNOG00000048201 RatGTEx
  ENSRNOG00000065551 RatGTEx
  ENSRNOG00000083423 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I5Y731 ENTREZGENE
  A0A8I5ZU44 ENTREZGENE
  A0A8I6GLP4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or6c206  olfactory receptor family 6 subfamily C member 206  Olr905  olfactory receptor 905  Symbol and Name Changed 1299863 APPROVED
2021-03-09 Olr905  olfactory receptor 905  LOC108349829  olfactory receptor 6C3-like  Data merged from RGD:11407497 737654 PROVISIONAL
2016-08-02 LOC108349829  olfactory receptor 6C3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Olr905  olfactory receptor 905  LOC100365781  olfactory receptor Olr905-like  Data merged from RGD:2318404 1643240 APPROVED
2010-05-05 LOC100365781  olfactory receptor Olr905-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Olr905  olfactory receptor 905   Olr905_predicted  olfactory receptor 905 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr905_predicted  olfactory receptor 905 (predicted)      Symbol and Name status set to approved 70820 APPROVED