Rsph3 (radial spoke head 3) - Rat Genome Database

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Gene: Rsph3 (radial spoke head 3) Rattus norvegicus
Analyze
Symbol: Rsph3
Name: radial spoke head 3
RGD ID: 1311306
Description: Predicted to be located in cytoplasm; cytoskeleton; and motile cilium. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 32. Orthologous to human RSPH3 (radial spoke head 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361476; radial spoke 3 homolog; radial spoke 3 homolog (Chlamydomonas); radial spoke head 3 homolog; radial spoke head protein 3 homolog; radial spokehead-like 2; Rshl2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,506,988 - 49,565,740 (-)NCBIGRCr8
mRatBN7.2147,101,961 - 47,155,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,101,961 - 47,154,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,665,045 - 47,703,111 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,652,529 - 53,690,574 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,740,516 - 47,778,582 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,412,151 - 47,478,924 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,426,258 - 47,477,524 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,729,556 - 48,780,832 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,313,530 - 41,336,537 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,316,470 - 41,370,068 (-)NCBI
Celera142,782,009 - 42,842,838 (-)NCBICelera
Cytogenetic Map1q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (IBA,ISO)
cytoplasm  (IEA)
cytoskeleton  (IEA)
motile cilium  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:27120127  


Genomics

Comparative Map Data
Rsph3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,506,988 - 49,565,740 (-)NCBIGRCr8
mRatBN7.2147,101,961 - 47,155,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,101,961 - 47,154,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,665,045 - 47,703,111 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,652,529 - 53,690,574 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,740,516 - 47,778,582 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,412,151 - 47,478,924 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,426,258 - 47,477,524 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,729,556 - 48,780,832 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,313,530 - 41,336,537 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,316,470 - 41,370,068 (-)NCBI
Celera142,782,009 - 42,842,838 (-)NCBICelera
Cytogenetic Map1q11NCBI
RSPH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,962,980 - 159,000,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,970,084 - 159,000,202 (-)EnsemblGRCh38hg38GRCh38
GRCh376159,393,903 - 159,421,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366159,318,254 - 159,341,186 (-)NCBINCBI36Build 36hg18NCBI36
Build 346159,368,676 - 159,391,607NCBI
Celera6160,046,571 - 160,069,312 (-)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,868,976 - 156,891,903 (-)NCBIHuRef
CHM1_16159,660,720 - 159,683,640 (-)NCBICHM1_1
T2T-CHM13v2.06160,212,959 - 160,245,813 (-)NCBIT2T-CHM13v2.0
Rsph3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,164,446 - 8,198,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl178,164,446 - 8,198,656 (+)EnsemblGRCm39 Ensembl
GRCm38177,945,614 - 7,979,556 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl177,945,614 - 7,979,824 (+)EnsemblGRCm38mm10GRCm38
MGSCv37178,138,479 - 8,172,421 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36177,784,157 - 7,817,660 (+)NCBIMGSCv36mm8
Celera177,474,283 - 7,474,984 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map174.82NCBI
Rsph3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554393,509,395 - 3,534,392 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554393,510,076 - 3,533,924 (+)NCBIChiLan1.0ChiLan1.0
RSPH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25178,993,081 - 179,105,295 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16176,898,056 - 177,010,374 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06156,861,740 - 156,889,821 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16161,875,729 - 161,904,276 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6161,880,465 - 161,904,315 (-)Ensemblpanpan1.1panPan2
RSPH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1148,329,171 - 48,349,924 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl148,329,211 - 48,349,088 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha149,171,625 - 49,192,001 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0148,513,493 - 48,534,673 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl148,513,534 - 48,534,213 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1148,389,455 - 48,409,743 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0148,260,340 - 48,280,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0148,819,818 - 48,840,110 (-)NCBIUU_Cfam_GSD_1.0
Rsph3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946143,313,711 - 143,341,249 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648910,569,541 - 10,593,100 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648910,568,736 - 10,592,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,244,040 - 8,265,659 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118,243,177 - 8,265,816 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,141,811 - 10,149,319 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RSPH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11386,562,453 - 86,582,483 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604058,957,000 - 58,976,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rsph3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624929661,495 - 682,072 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624929661,257 - 682,772 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rsph3
421 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:101
Interacting mature miRNAs:107
Transcripts:ENSRNOT00000025554, ENSRNOT00000067916
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003748694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC169129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067916   ⟹   ENSRNOP00000063027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl147,101,961 - 47,154,232 (-)Ensembl
Rnor_6.0 Ensembl147,426,258 - 47,477,524 (-)Ensembl
RefSeq Acc Id: NM_001108463   ⟹   NP_001101933
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,521,195 - 49,559,257 (-)NCBI
mRatBN7.2147,116,168 - 47,154,232 (-)NCBI
RefSeq Acc Id: XM_006227909   ⟹   XP_006227971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,506,988 - 49,565,740 (-)NCBI
mRatBN7.2147,102,002 - 47,155,201 (-)NCBI
Rnor_6.0147,426,314 - 47,478,923 (-)NCBI
Rnor_5.0148,729,556 - 48,780,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006227910   ⟹   XP_006227972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,506,988 - 49,565,740 (-)NCBI
mRatBN7.2147,101,961 - 47,155,201 (-)NCBI
Rnor_6.0147,426,244 - 47,478,923 (-)NCBI
Rnor_5.0148,729,556 - 48,780,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008758741   ⟹   XP_008756963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,516,052 - 49,565,740 (-)NCBI
mRatBN7.2147,111,932 - 47,155,201 (-)NCBI
Rnor_6.0147,436,722 - 47,478,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081295   ⟹   XP_038937223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,521,185 - 49,551,897 (-)NCBI
mRatBN7.2147,116,156 - 47,153,535 (-)NCBI
RefSeq Acc Id: XM_039081299   ⟹   XP_038937227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,521,185 - 49,558,645 (-)NCBI
mRatBN7.2147,116,156 - 47,153,611 (-)NCBI
RefSeq Acc Id: XM_063266140   ⟹   XP_063122210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,529,903 - 49,551,897 (-)NCBI
RefSeq Acc Id: XP_006227972   ⟸   XM_006227910
- Peptide Label: isoform X2
- UniProtKB: F1LRY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227971   ⟸   XM_006227909
- Peptide Label: isoform X1
- UniProtKB: F1LRY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008756963   ⟸   XM_008758741
- Peptide Label: isoform X1
- UniProtKB: F1LRY1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063027   ⟸   ENSRNOT00000067916
RefSeq Acc Id: XP_038937227   ⟸   XM_039081299
- Peptide Label: isoform X4
- UniProtKB: B5DFN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937223   ⟸   XM_039081295
- Peptide Label: isoform X4
- UniProtKB: B5DFN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001101933   ⟸   NM_001108463
- UniProtKB: F1LRY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122210   ⟸   XM_063266140
- Peptide Label: isoform X3
Protein Domains
Reverse transcriptase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LRY1-F1-model_v2 AlphaFold F1LRY1 1-534 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311306 AgrOrtholog
BioCyc Gene G2FUF-61609 BioCyc
Ensembl Genes ENSRNOG00000018762 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067916.4 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.270 UniProtKB/TrEMBL
InterPro DNA/RNA_pol_sf UniProtKB/TrEMBL
  Radial_spoke_3 UniProtKB/TrEMBL
  Rev_trsase/Diguanyl_cyclase UniProtKB/TrEMBL
  RT_dom UniProtKB/TrEMBL
NCBI Gene 361476 ENTREZGENE
PANTHER LINE-1 RETROTRANSPOSABLE ELEMENT ORF2 PROTEIN UniProtKB/TrEMBL
  PTHR21648 UniProtKB/TrEMBL
  RADIAL SPOKE HEAD PROTEIN 3 HOMOLOG UniProtKB/TrEMBL
  REVERSE TRANSCRIPTASES UniProtKB/TrEMBL
Pfam Radial_spoke_3 UniProtKB/TrEMBL
  RVT_1 UniProtKB/TrEMBL
PhenoGen Rsph3 PhenoGen
PROSITE RT_POL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018762 RatGTEx
Superfamily-SCOP DNA/RNA polymerases UniProtKB/TrEMBL
UniProt A6JKU3_RAT UniProtKB/TrEMBL
  B5DFN5 ENTREZGENE, UniProtKB/TrEMBL
  F1LRY1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 Rsph3  radial spoke head 3  Rsph3  radial spoke head 3 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-05-24 Rsph3  radial spoke head 3 homolog  Rsph3  radial spoke 3 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-13 Rsph3  radial spoke 3 homolog  Rsph3  radial spoke 3 homolog (Chlamydomonas)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-02-02 Rsph3  radial spoke 3 homolog (Chlamydomonas)  Rshl2  radial spokehead-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rshl2  radial spokehead-like 2   Rshl2_predicted  radial spokehead-like 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rshl2_predicted  radial spokehead-like 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED