Armc8 (armadillo repeat containing 8) - Rat Genome Database

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Gene: Armc8 (armadillo repeat containing 8) Rattus norvegicus
Analyze
Symbol: Armc8
Name: armadillo repeat containing 8
RGD ID: 1310477
Description: Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of GID complex. Orthologous to human ARMC8 (armadillo repeat containing 8); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: armadillo repeat-containing protein 8; LOC315949; RGD1310477; similar to RIKEN cDNA 1200015K23
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88108,916,274 - 109,010,877 (-)NCBIGRCr8
mRatBN7.28100,036,946 - 100,131,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,036,946 - 100,131,520 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8105,703,848 - 105,798,185 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08103,903,143 - 103,997,479 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,745,673 - 101,840,013 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,723,359 - 107,819,208 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,723,359 - 107,819,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08107,148,284 - 107,244,117 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48104,341,558 - 104,436,086 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18104,362,713 - 104,455,541 (-)NCBI
Celera899,438,273 - 99,531,720 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17467196   PMID:29911972   PMID:31904090  


Genomics

Comparative Map Data
Armc8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88108,916,274 - 109,010,877 (-)NCBIGRCr8
mRatBN7.28100,036,946 - 100,131,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,036,946 - 100,131,520 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8105,703,848 - 105,798,185 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08103,903,143 - 103,997,479 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,745,673 - 101,840,013 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,723,359 - 107,819,208 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,723,359 - 107,819,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08107,148,284 - 107,244,117 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48104,341,558 - 104,436,086 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18104,362,713 - 104,455,541 (-)NCBI
Celera899,438,273 - 99,531,720 (-)NCBICelera
Cytogenetic Map8q31NCBI
ARMC8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383138,187,248 - 138,298,389 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3138,187,248 - 138,298,384 (+)EnsemblGRCh38hg38GRCh38
GRCh373137,906,090 - 138,017,231 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363139,388,838 - 139,498,909 (+)NCBINCBI36Build 36hg18NCBI36
Celera3136,330,912 - 136,441,107 (+)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3135,281,180 - 135,392,287 (+)NCBIHuRef
CHM1_13137,869,909 - 137,981,013 (+)NCBICHM1_1
T2T-CHM13v2.03140,927,839 - 141,038,955 (+)NCBIT2T-CHM13v2.0
Armc8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39999,360,438 - 99,451,471 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl999,360,425 - 99,450,952 (-)EnsemblGRCm39 Ensembl
GRCm38999,478,385 - 99,568,907 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl999,478,372 - 99,568,899 (-)EnsemblGRCm38mm10GRCm38
MGSCv37999,378,810 - 99,469,318 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36999,289,447 - 99,378,251 (-)NCBIMGSCv36mm8
Celera999,013,248 - 99,103,820 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.74NCBI
Armc8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955501705,967 - 800,880 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955501705,967 - 800,884 (-)NCBIChiLan1.0ChiLan1.0
ARMC8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22136,092,054 - 136,204,879 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13136,096,797 - 136,209,608 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03135,214,895 - 135,328,235 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13142,665,113 - 142,777,397 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3142,665,419 - 142,774,903 (+)Ensemblpanpan1.1panPan2
ARMC8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12334,401,684 - 34,511,962 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2334,401,720 - 34,510,422 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2334,394,214 - 34,505,315 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02334,941,627 - 35,052,849 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2334,941,849 - 35,050,946 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12334,623,466 - 34,734,619 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02334,688,808 - 34,799,938 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02334,939,916 - 35,051,114 (+)NCBIUU_Cfam_GSD_1.0
Armc8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560273,788,178 - 73,886,845 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936540527,965 - 626,607 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936540527,977 - 626,628 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMC8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1378,982,710 - 79,085,680 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11378,982,684 - 79,085,700 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21386,651,278 - 86,696,017 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARMC8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11552,244,803 - 52,354,877 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1552,243,835 - 52,355,232 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604125,258,177 - 25,368,755 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Armc8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473014,710,919 - 14,799,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473014,710,878 - 14,801,654 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Armc8
330 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:546
Count of miRNA genes:273
Interacting mature miRNAs:339
Transcripts:ENSRNOT00000019536
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)888612425107550209Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat

Markers in Region
RH132845  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28100,078,162 - 100,078,360 (+)MAPPERmRatBN7.2
Rnor_6.08107,765,042 - 107,765,239NCBIRnor6.0
Rnor_5.08107,189,967 - 107,190,164UniSTSRnor5.0
RGSC_v3.48104,382,775 - 104,382,972UniSTSRGSC3.4
Celera899,478,506 - 99,478,703UniSTS
RH 3.4 Map81051.2UniSTS
Cytogenetic Map8q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001173354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000019536   ⟹   ENSRNOP00000019536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8100,036,946 - 100,131,390 (-)Ensembl
Rnor_6.0 Ensembl8107,723,359 - 107,819,050 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102972   ⟹   ENSRNOP00000093072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8100,036,946 - 100,131,390 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107798   ⟹   ENSRNOP00000093466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8100,042,554 - 100,111,752 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109437   ⟹   ENSRNOP00000090699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8100,079,073 - 100,131,520 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115822   ⟹   ENSRNOP00000089635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8100,036,946 - 100,131,390 (-)Ensembl
RefSeq Acc Id: NM_001173354   ⟹   NP_001166825
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,274 - 109,010,717 (-)NCBI
mRatBN7.28100,036,946 - 100,131,390 (-)NCBI
Rnor_6.08107,723,359 - 107,819,050 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Celera899,438,273 - 99,531,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243622   ⟹   XP_006243684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,468 (-)NCBI
Rnor_6.08107,723,359 - 107,807,856 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243623   ⟹   XP_006243685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,467 (-)NCBI
Rnor_6.08107,723,359 - 107,807,855 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243624   ⟹   XP_006243686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,473 (-)NCBI
Rnor_6.08107,723,359 - 107,807,858 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243625   ⟹   XP_006243687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,866 (-)NCBI
mRatBN7.28100,036,946 - 100,131,544 (-)NCBI
Rnor_6.08107,723,359 - 107,819,208 (-)NCBI
Rnor_5.08107,148,284 - 107,244,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081544   ⟹   XP_038937472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,469 (-)NCBI
RefSeq Acc Id: XM_039081545   ⟹   XP_038937473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,467 (-)NCBI
RefSeq Acc Id: XM_039081546   ⟹   XP_038937474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,473 (-)NCBI
RefSeq Acc Id: XM_039081547   ⟹   XP_038937475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 108,999,832 (-)NCBI
mRatBN7.28100,036,946 - 100,120,472 (-)NCBI
RefSeq Acc Id: XM_063265588   ⟹   XP_063121658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,877 (-)NCBI
RefSeq Acc Id: XM_063265589   ⟹   XP_063121659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,877 (-)NCBI
RefSeq Acc Id: XM_063265590   ⟹   XP_063121660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,868 (-)NCBI
RefSeq Acc Id: XM_063265591   ⟹   XP_063121661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,877 (-)NCBI
RefSeq Acc Id: XM_063265592   ⟹   XP_063121662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,916,280 - 109,010,868 (-)NCBI
RefSeq Acc Id: NP_001166825   ⟸   NM_001173354
- UniProtKB: F1M943 (UniProtKB/TrEMBL),   B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243687   ⟸   XM_006243625
- Peptide Label: isoform X1
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243686   ⟸   XM_006243624
- Peptide Label: isoform X4
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243685   ⟸   XM_006243623
- Peptide Label: isoform X3
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243684   ⟸   XM_006243622
- Peptide Label: isoform X1
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019536   ⟸   ENSRNOT00000019536
RefSeq Acc Id: XP_038937474   ⟸   XM_039081546
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038937475   ⟸   XM_039081547
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038937472   ⟸   XM_039081544
- Peptide Label: isoform X2
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937473   ⟸   XM_039081545
- Peptide Label: isoform X5
- UniProtKB: B4F7A2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090699   ⟸   ENSRNOT00000109437
Ensembl Acc Id: ENSRNOP00000093466   ⟸   ENSRNOT00000107798
Ensembl Acc Id: ENSRNOP00000093072   ⟸   ENSRNOT00000102972
Ensembl Acc Id: ENSRNOP00000089635   ⟸   ENSRNOT00000115822
RefSeq Acc Id: XP_063121661   ⟸   XM_063265591
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063121659   ⟸   XM_063265589
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AI93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121658   ⟸   XM_063265588
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063121662   ⟸   XM_063265592
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063121660   ⟸   XM_063265590
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GI95 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M943-F1-model_v2 AlphaFold F1M943 1-673 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696211
Promoter ID:EPDNEW_R6736
Type:multiple initiation site
Name:Armc8_1
Description:armadillo repeat containing 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08107,818,981 - 107,819,041EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310477 AgrOrtholog
BioCyc Gene G2FUF-29394 BioCyc
Ensembl Genes ENSRNOG00000014521 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019536.6 UniProtKB/TrEMBL
  ENSRNOT00000102972.1 UniProtKB/TrEMBL
  ENSRNOT00000107798.1 UniProtKB/TrEMBL
  ENSRNOT00000109437.1 UniProtKB/TrEMBL
  ENSRNOT00000115822.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  ARMC8/Vid28 UniProtKB/TrEMBL
KEGG Report rno:315949 UniProtKB/TrEMBL
NCBI Gene 315949 ENTREZGENE
PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 8 UniProtKB/TrEMBL
  PTHR15651 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
PhenoGen Armc8 PhenoGen
PROSITE ARM_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014521 RatGTEx
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6AD24_RAT UniProtKB/TrEMBL
  A0A8I6AI93 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIU1_RAT UniProtKB/TrEMBL
  A0A8I6GI95 ENTREZGENE, UniProtKB/TrEMBL
  B4F7A2 ENTREZGENE, UniProtKB/TrEMBL
  F1M943 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Armc8  armadillo repeat containing 8   Armc8_predicted  armadillo repeat containing 8 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Armc8_predicted  armadillo repeat containing 8 (predicted)  RGD1310477_predicted  similar to RIKEN cDNA 1200015K23 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310477_predicted  similar to RIKEN cDNA 1200015K23 (predicted)  LOC315949_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315949_predicted  similar to RIKEN cDNA 1200015K23 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL