Cenpk (centromere protein K) - Rat Genome Database

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Gene: Cenpk (centromere protein K) Rattus norvegicus
Analyze
Symbol: Cenpk
Name: centromere protein K
RGD ID: 1310461
Description: Predicted to be involved in mitotic sister chromatid segregation. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of inner kinetochore. Orthologous to human CENPK (centromere protein K); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC294712; Solt; SoxLZ/Sox6 leucine zipper binding protein in testis
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8237,094,163 - 37,155,158 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl237,094,248 - 37,119,488 (+)EnsemblGRCr8
mRatBN7.2235,360,390 - 35,421,372 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl235,360,132 - 35,385,706 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx242,473,469 - 42,498,681 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0240,532,156 - 40,557,370 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0235,388,487 - 35,413,716 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0234,312,766 - 34,373,945 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl234,312,766 - 34,335,776 (+)Ensemblrn6Rnor6.0
Rnor_5.0253,441,765 - 53,467,341 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4235,159,157 - 35,182,167 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera231,336,422 - 31,359,436 (+)NCBICelera
RGSC_v3.1235,079,888 - 35,105,102 (+)NCBI
Cytogenetic Map2q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-butoxyethanol  (ISO)
2-palmitoylglycerol  (ISO)
3-methylcholanthrene  (ISO)
acetamide  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chlorpyrifos  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
indole-3-methanol  (EXP)
lead diacetate  (EXP)
lucanthone  (ISO)
methotrexate  (ISO)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nitrofen  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
phenobarbital  (ISO)
phytoestrogen  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propanal  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
SP2509  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP,ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10996314  


Genomics

Comparative Map Data
Cenpk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8237,094,163 - 37,155,158 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl237,094,248 - 37,119,488 (+)EnsemblGRCr8
mRatBN7.2235,360,390 - 35,421,372 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl235,360,132 - 35,385,706 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx242,473,469 - 42,498,681 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0240,532,156 - 40,557,370 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0235,388,487 - 35,413,716 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0234,312,766 - 34,373,945 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl234,312,766 - 34,335,776 (+)Ensemblrn6Rnor6.0
Rnor_5.0253,441,765 - 53,467,341 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4235,159,157 - 35,182,167 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera231,336,422 - 31,359,436 (+)NCBICelera
RGSC_v3.1235,079,888 - 35,105,102 (+)NCBI
Cytogenetic Map2q13NCBI
CENPK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38565,495,624 - 65,563,168 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl565,517,766 - 65,563,183 (-)Ensemblhg38GRCh38
GRCh37564,812,119 - 64,858,995 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36564,849,350 - 64,894,751 (-)NCBIBuild 36Build 36hg18NCBI36
Celera561,812,111 - 61,857,460 (-)NCBICelera
Cytogenetic Map5q12.3ENTREZGENE
HuRef561,769,466 - 61,815,023 (-)NCBIHuRef
CHM1_1564,813,279 - 64,858,667 (-)NCBICHM1_1
T2T-CHM13v2.0566,338,058 - 66,384,928 (-)NCBIT2T-CHM13v2.0
Cenpk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913104,365,474 - 104,386,130 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13104,365,119 - 104,388,900 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3813104,228,611 - 104,249,622 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13104,228,611 - 104,252,392 (+)Ensemblmm10GRCm38
MGSCv3713105,019,035 - 105,039,697 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3613105,349,337 - 105,369,999 (+)NCBIMGSCv36mm8
Celera13108,621,358 - 108,642,051 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.42NCBI
Cenpk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554463,531,702 - 3,583,914 (+)Ensembl
ChiLan1.0NW_0049554463,531,702 - 3,583,914 (+)NCBIChiLan1.0ChiLan1.0
CENPK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2448,358,594 - 48,409,512 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1546,512,221 - 46,561,002 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0548,443,491 - 48,490,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1550,097,628 - 50,144,126 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl550,105,743 - 50,142,567 (+)EnsemblpanPan2panpan1.1
CENPK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1251,262,475 - 51,300,016 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl251,263,185 - 51,292,425 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha248,192,162 - 48,256,605 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0251,727,375 - 51,792,095 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl251,753,740 - 51,783,767 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1248,787,621 - 48,852,015 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0249,576,772 - 49,641,151 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0250,468,905 - 50,533,342 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cenpk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213194,682,894 - 194,746,935 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364803,624,143 - 3,645,884 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364803,621,758 - 3,645,968 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1644,041,490 - 44,080,492 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11644,008,673 - 44,080,565 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21647,320,120 - 47,359,171 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CENPK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1461,712,006 - 61,755,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl461,712,043 - 61,747,178 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604910,354,839 - 10,398,069 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248154,311,942 - 4,366,442 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248154,311,929 - 4,427,278 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cenpk
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13193,109,785 - 193,132,464 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cenpk
579 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:176
Interacting mature miRNAs:196
Transcripts:ENSRNOT00000060962
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)23561408353462005Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 67 165 91 90 59 91 59 6 350 190 11 144 77 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000060962   ⟹   ENSRNOP00000057684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl237,094,248 - 37,116,455 (+)Ensembl
mRatBN7.2 Ensembl235,360,132 - 35,383,142 (+)Ensembl
Rnor_6.0 Ensembl234,312,766 - 34,335,776 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103473   ⟹   ENSRNOP00000081169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl237,094,908 - 37,119,488 (+)Ensembl
mRatBN7.2 Ensembl235,361,126 - 35,385,706 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148851   ⟹   ENSRNOP00000112677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl237,096,080 - 37,119,488 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154213   ⟹   ENSRNOP00000112753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl237,094,248 - 37,119,486 (+)Ensembl
RefSeq Acc Id: NM_001399198   ⟹   NP_001386127
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8237,094,267 - 37,119,488 (+)NCBI
mRatBN7.2235,360,485 - 35,385,708 (+)NCBI
RefSeq Acc Id: NM_001399199   ⟹   NP_001386128
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8237,094,267 - 37,119,488 (+)NCBI
mRatBN7.2235,360,485 - 35,385,708 (+)NCBI
RefSeq Acc Id: XM_006231889   ⟹   XP_006231951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8237,094,448 - 37,119,488 (+)NCBI
mRatBN7.2235,360,649 - 35,385,708 (+)NCBI
Rnor_6.0234,313,170 - 34,338,342 (+)NCBI
Rnor_5.0253,441,765 - 53,467,341 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760667   ⟹   XP_008758889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8237,094,163 - 37,155,158 (+)NCBI
mRatBN7.2235,360,390 - 35,421,372 (+)NCBI
Rnor_6.0234,313,072 - 34,373,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039101934   ⟹   XP_038957862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8237,098,242 - 37,119,488 (+)NCBI
mRatBN7.2235,364,460 - 35,385,708 (+)NCBI
RefSeq Acc Id: XP_006231951   ⟸   XM_006231889
- Peptide Label: isoform X1
- UniProtKB: A6I5F7 (UniProtKB/TrEMBL),   A0A8I6G7L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758889   ⟸   XM_008760667
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000057684   ⟸   ENSRNOT00000060962
RefSeq Acc Id: XP_038957862   ⟸   XM_039101934
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000081169   ⟸   ENSRNOT00000103473
RefSeq Acc Id: NP_001386127   ⟸   NM_001399198
- Peptide Label: isoform 1
- UniProtKB: A6I5F7 (UniProtKB/TrEMBL),   A0A8I6G7L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386128   ⟸   NM_001399199
- Peptide Label: isoform 2
- UniProtKB: A0A8I6G7L9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112677   ⟸   ENSRNOT00000148851
Ensembl Acc Id: ENSRNOP00000112753   ⟸   ENSRNOT00000154213

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9X9-F1-model_v2 AlphaFold D4A9X9 1-302 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691123
Promoter ID:EPDNEW_R1648
Type:multiple initiation site
Name:Cenpk_1
Description:centromere protein K
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0234,313,118 - 34,313,178EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310461 AgrOrtholog
BioCyc Gene G2FUF-54552 BioCyc
Ensembl Genes ENSRNOG00000039740 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060962 ENTREZGENE
  ENSRNOT00000060962.4 UniProtKB/TrEMBL
  ENSRNOT00000103473.2 UniProtKB/TrEMBL
  ENSRNOT00000148851.1 UniProtKB/TrEMBL
  ENSRNOT00000154213 ENTREZGENE
  ENSRNOT00000154213.1 UniProtKB/TrEMBL
InterPro Centromere_CenpK UniProtKB/TrEMBL
NCBI Gene 294712 ENTREZGENE
PANTHER CENTROMERE PROTEIN K UniProtKB/TrEMBL
  PTHR14401 UniProtKB/TrEMBL
Pfam CENP-K UniProtKB/TrEMBL
PhenoGen Cenpk PhenoGen
RatGTEx ENSRNOG00000039740 RatGTEx
UniProt A0A8I6G7L9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LNY9_RAT UniProtKB/TrEMBL
  A0ABK0M5T1_RAT UniProtKB/TrEMBL
  A6I5F7 ENTREZGENE, UniProtKB/TrEMBL
  D4A9X9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Cenpk  centromere protein K  Solt_predicted  SoxLZ/Sox6 leucine zipper binding protein in testis (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Solt_predicted  SoxLZ/Sox6 leucine zipper binding protein in testis (predicted)      Symbol and Name status set to approved 70820 APPROVED