Kansl3 (KAT8 regulatory NSL complex subunit 3) - Rat Genome Database

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Gene: Kansl3 (KAT8 regulatory NSL complex subunit 3) Rattus norvegicus
Analyze
Symbol: Kansl3
Name: KAT8 regulatory NSL complex subunit 3
RGD ID: 1309220
Description: Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of NSL complex. Orthologous to human KANSL3 (KAT8 regulatory NSL complex subunit 3); INTERACTS WITH 17beta-estradiol; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC316328; LOC316328; non-specific lethal 3 homolog; NSL complex protein NSL3; RGD1309220; similar to RIKEN cDNA 4632411B12; uncharacterized protein KIAA1310 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,058,070 - 46,101,643 (-)NCBIGRCr8
mRatBN7.2938,562,170 - 38,605,757 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl938,562,177 - 38,605,692 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx947,073,701 - 47,109,064 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0952,180,982 - 52,224,437 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0950,462,870 - 50,506,327 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0942,899,432 - 42,943,224 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl942,899,432 - 42,943,198 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,553,536 - 42,597,088 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,259,028 - 35,303,816 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1935,262,122 - 35,305,243 (-)NCBI
Celera936,330,073 - 36,372,844 (-)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:20018852  


Genomics

Comparative Map Data
Kansl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,058,070 - 46,101,643 (-)NCBIGRCr8
mRatBN7.2938,562,170 - 38,605,757 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl938,562,177 - 38,605,692 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx947,073,701 - 47,109,064 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0952,180,982 - 52,224,437 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0950,462,870 - 50,506,327 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0942,899,432 - 42,943,224 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl942,899,432 - 42,943,198 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,553,536 - 42,597,088 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,259,028 - 35,303,816 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1935,262,122 - 35,305,243 (-)NCBI
Celera936,330,073 - 36,372,844 (-)NCBICelera
Cytogenetic Map9q21NCBI
KANSL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,580,494 - 96,638,312 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,593,170 - 96,642,787 (-)EnsemblGRCh38hg38GRCh38
GRCh37297,258,909 - 97,304,049 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,622,638 - 96,667,810 (-)NCBINCBI36Build 36hg18NCBI36
Celera291,700,119 - 91,745,338 (-)NCBICelera
Cytogenetic Map2q11.2ENTREZGENE
HuRef291,220,668 - 91,265,910 (-)NCBIHuRef
CHM1_1297,263,720 - 97,308,936 (-)NCBICHM1_1
T2T-CHM13v2.0297,089,017 - 97,144,959 (-)NCBIT2T-CHM13v2.0
Kansl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,374,811 - 36,408,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,374,811 - 36,408,262 (-)EnsemblGRCm39 Ensembl
GRCm38136,335,730 - 36,369,193 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,335,730 - 36,369,181 (-)EnsemblGRCm38mm10GRCm38
MGSCv37136,392,575 - 36,426,026 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,280,276 - 36,313,727 (-)NCBIMGSCv36mm8
Celera136,122,543 - 36,155,966 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.22NCBI
Kansl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,987,816 - 4,036,656 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,976,094 - 4,036,656 (-)NCBIChiLan1.0ChiLan1.0
KANSL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21231,667,047 - 31,714,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A31,669,790 - 31,716,951 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A102,675,259 - 102,720,426 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,517,112 - 97,562,253 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,522,746 - 97,561,016 (-)Ensemblpanpan1.1panPan2
KANSL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11045,315,919 - 45,359,677 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1045,317,089 - 45,357,658 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01046,192,034 - 46,235,822 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1046,192,111 - 46,236,275 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11045,901,721 - 45,945,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01046,190,006 - 46,233,563 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01046,373,935 - 46,417,751 (+)NCBIUU_Cfam_GSD_1.0
Kansl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,315,292 - 83,353,712 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744566,956 - 606,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936744565,950 - 606,654 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KANSL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl356,959,110 - 57,005,310 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1356,959,183 - 57,011,242 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KANSL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114925,096 - 971,817 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14924,830 - 970,294 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,312,292 - 168,401,618 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kansl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,526,753 - 2,566,289 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,526,753 - 2,566,572 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kansl3
179 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:801
Count of miRNA genes:298
Interacting mature miRNAs:386
Transcripts:ENSRNOT00000020955
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat

Markers in Region
D9Got44  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22104,935,118 - 104,935,281 (+)MAPPERmRatBN7.2
mRatBN7.2938,575,505 - 38,575,638 (+)MAPPERmRatBN7.2
Rnor_6.0942,913,026 - 42,913,158NCBIRnor6.0
Rnor_6.02107,365,293 - 107,365,453NCBIRnor6.0
Rnor_5.0942,566,905 - 42,567,037UniSTSRnor5.0
Rnor_5.02127,099,798 - 127,099,958UniSTSRnor5.0
RGSC_v3.4935,273,691 - 35,273,823UniSTSRGSC3.4
RGSC_v3.42107,694,936 - 107,695,096UniSTSRGSC3.4
RGSC_v3.12107,639,897 - 107,640,058RGD
Celera2100,251,402 - 100,251,564UniSTS
Celera936,342,482 - 36,342,614UniSTS
RH 2.0 Map9378.0RGD
Cytogenetic Map9q21UniSTS
RH132858  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2938,562,207 - 38,562,408 (+)MAPPERmRatBN7.2
Rnor_6.0942,899,464 - 42,899,664NCBIRnor6.0
Rnor_5.0942,553,568 - 42,553,768UniSTSRnor5.0
RGSC_v3.4935,259,060 - 35,259,260UniSTSRGSC3.4
Celera936,330,105 - 36,330,305UniSTS
Cytogenetic Map9q21UniSTS
RH143602  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0942,942,055 - 42,942,874NCBIRnor6.0
Rnor_5.0942,595,934 - 42,596,753UniSTSRnor5.0
RGSC_v3.4935,302,719 - 35,303,538UniSTSRGSC3.4
Celera936,371,579 - 36,372,398UniSTS
Cytogenetic Map9q21UniSTS
BF413022  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2938,596,626 - 38,596,753 (+)MAPPERmRatBN7.2
Rnor_6.0942,934,146 - 42,934,272NCBIRnor6.0
Rnor_5.0942,588,025 - 42,588,151UniSTSRnor5.0
RGSC_v3.4935,294,810 - 35,294,936UniSTSRGSC3.4
Celera936,363,601 - 36,363,727UniSTS
RH 3.4 Map9357.5UniSTS
Cytogenetic Map9q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 51 35 19 35 8 11 74 35 41 11 8
Low 6 6 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001034835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC105865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020955   ⟹   ENSRNOP00000020955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl938,562,192 - 38,605,692 (-)Ensembl
Rnor_6.0 Ensembl942,899,433 - 42,943,152 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085260   ⟹   ENSRNOP00000073261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl938,562,177 - 38,603,581 (-)Ensembl
Rnor_6.0 Ensembl942,899,432 - 42,943,198 (-)Ensembl
RefSeq Acc Id: NM_001034835   ⟹   NP_001030007
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,521 (-)NCBI
mRatBN7.2938,562,176 - 38,605,635 (-)NCBI
Rnor_6.0942,899,432 - 42,943,152 (-)NCBI
Rnor_5.0942,553,536 - 42,597,088 (-)NCBI
RGSC_v3.4935,259,028 - 35,303,816 (-)RGD
Celera936,330,073 - 36,372,844 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244808   ⟹   XP_006244870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,641 (-)NCBI
mRatBN7.2938,562,170 - 38,605,756 (-)NCBI
Rnor_6.0942,899,432 - 42,943,224 (-)NCBI
Rnor_5.0942,553,536 - 42,597,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244809   ⟹   XP_006244871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,388 (-)NCBI
mRatBN7.2938,562,170 - 38,605,501 (-)NCBI
Rnor_6.0942,899,432 - 42,942,987 (-)NCBI
Rnor_5.0942,553,536 - 42,597,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244810   ⟹   XP_006244872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,357 (-)NCBI
mRatBN7.2938,562,170 - 38,605,471 (-)NCBI
Rnor_6.0942,899,432 - 42,942,988 (-)NCBI
Rnor_5.0942,553,536 - 42,597,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244811   ⟹   XP_006244873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,100,480 (-)NCBI
mRatBN7.2938,562,170 - 38,605,644 (-)NCBI
Rnor_6.0942,899,432 - 42,943,161 (-)NCBI
Rnor_5.0942,553,536 - 42,597,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244812   ⟹   XP_006244874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,100,354 (-)NCBI
mRatBN7.2938,562,170 - 38,604,463 (-)NCBI
Rnor_6.0942,899,432 - 42,941,930 (-)NCBI
Rnor_5.0942,553,536 - 42,597,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083566   ⟹   XP_038939494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,643 (-)NCBI
mRatBN7.2938,562,170 - 38,605,757 (-)NCBI
RefSeq Acc Id: XM_039083567   ⟹   XP_038939495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,580 (-)NCBI
mRatBN7.2938,562,170 - 38,604,449 (-)NCBI
RefSeq Acc Id: XM_039083569   ⟹   XP_038939497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,084,090 (-)NCBI
mRatBN7.2938,562,170 - 38,588,201 (-)NCBI
RefSeq Acc Id: XM_063267147   ⟹   XP_063123217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,019 (-)NCBI
RefSeq Acc Id: XM_063267149   ⟹   XP_063123219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,388 (-)NCBI
RefSeq Acc Id: XM_063267150   ⟹   XP_063123220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,605 (-)NCBI
RefSeq Acc Id: XM_063267151   ⟹   XP_063123221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,101,357 (-)NCBI
RefSeq Acc Id: XM_063267152   ⟹   XP_063123222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,100,428 (-)NCBI
RefSeq Acc Id: XM_063267153   ⟹   XP_063123223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,098,094 (-)NCBI
RefSeq Acc Id: XM_063267154   ⟹   XP_063123224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,058,070 - 46,100,230 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001030007   ⟸   NM_001034835
- UniProtKB: Q3KR73 (UniProtKB/Swiss-Prot),   A0A0G2K522 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244870   ⟸   XM_006244808
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K522 (UniProtKB/TrEMBL),   A0A8L2QAX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244873   ⟸   XM_006244811
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K522 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244871   ⟸   XM_006244809
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K522 (UniProtKB/TrEMBL),   A0A8L2QAX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244872   ⟸   XM_006244810
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K522 (UniProtKB/TrEMBL),   A0A8L2QAX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244874   ⟸   XM_006244812
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K522 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073261   ⟸   ENSRNOT00000085260
RefSeq Acc Id: ENSRNOP00000020955   ⟸   ENSRNOT00000020955
RefSeq Acc Id: XP_038939494   ⟸   XM_039083566
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QAX1 (UniProtKB/TrEMBL),   A0A0G2K522 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939495   ⟸   XM_039083567
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K522 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939497   ⟸   XM_039083569
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063123220   ⟸   XM_063267150
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123219   ⟸   XM_063267149
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123221   ⟸   XM_063267151
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123217   ⟸   XM_063267147
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123222   ⟸   XM_063267152
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123224   ⟸   XM_063267154
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063123223   ⟸   XM_063267153
- Peptide Label: isoform X4
Protein Domains
KANL3/Tex30 alpha/beta hydrolase-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3KR73-F1-model_v2 AlphaFold Q3KR73 1-877 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696600
Promoter ID:EPDNEW_R7125
Type:initiation region
Name:Kansl3_1
Description:KAT8 regulatory NSL complex subunit 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0942,943,181 - 42,943,241EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309220 AgrOrtholog
BioCyc Gene G2FUF-27814 BioCyc
Ensembl Genes ENSRNOG00000015417 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020955.6 UniProtKB/TrEMBL
  ENSRNOT00000085260.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7461395 IMAGE-MGC_LOAD
InterPro AB_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KANL3/Tex30_Abhydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NSL3/Tex30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:316328 UniProtKB/Swiss-Prot
MGC_CLONE MGC:125261 IMAGE-MGC_LOAD
NCBI Gene 316328 ENTREZGENE
PANTHER KAT8 REGULATORY NSL COMPLEX SUBUNIT 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13136 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Abhydrolase_11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kansl3 PhenoGen
RatGTEx ENSRNOG00000015417 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K522 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QAX1 ENTREZGENE, UniProtKB/TrEMBL
  KANL3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-12-06 Kansl3  KAT8 regulatory NSL complex subunit 3  RGD1309220  similar to RIKEN cDNA 4632411B12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309220  similar to RIKEN cDNA 4632411B12  RGD1309220_predicted  similar to RIKEN cDNA 4632411B12 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309220_predicted  similar to RIKEN cDNA 4632411B12 (predicted)  LOC316328_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316328_predicted  similar to RIKEN cDNA 4632411B12 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL