Exoc3l4 (exocyst complex component 3-like 4) - Rat Genome Database

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Gene: Exoc3l4 (exocyst complex component 3-like 4) Rattus norvegicus
Analyze
Symbol: Exoc3l4
Name: exocyst complex component 3-like 4
RGD ID: 1307749
Description: Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Predicted to be part of exocyst. Orthologous to human EXOC3L4 (exocyst complex component 3 like 4); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: exocyst complex component 3-like protein 4; hypothetical protein LOC299338; LOC299338; RGD1307749; similar to RIKEN cDNA 1600013K19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,273,857 - 136,287,877 (+)NCBIGRCr8
mRatBN7.26130,452,680 - 130,466,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,452,661 - 130,466,683 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6130,622,650 - 130,636,301 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,918,638 - 130,932,293 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,282,788 - 130,296,312 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,866,132 - 135,880,724 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,866,739 - 135,880,721 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,534,910 - 144,549,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,172,535 - 136,186,059 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16136,183,474 - 136,192,244 (+)NCBI
Celera6128,009,469 - 128,022,993 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
exocyst  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Exoc3l4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,273,857 - 136,287,877 (+)NCBIGRCr8
mRatBN7.26130,452,680 - 130,466,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,452,661 - 130,466,683 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6130,622,650 - 130,636,301 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,918,638 - 130,932,293 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,282,788 - 130,296,312 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,866,132 - 135,880,724 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,866,739 - 135,880,721 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,534,910 - 144,549,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,172,535 - 136,186,059 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16136,183,474 - 136,192,244 (+)NCBI
Celera6128,009,469 - 128,022,993 (+)NCBICelera
Cytogenetic Map6q32NCBI
EXOC3L4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,094,174 - 103,110,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,094,725 - 103,110,559 (+)EnsemblGRCh38hg38GRCh38
GRCh3714103,561,062 - 103,576,896 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,636,234 - 102,646,649 (+)NCBINCBI36Build 36hg18NCBI36
Celera1483,620,482 - 83,630,896 (+)NCBICelera
Cytogenetic Map14q32.32NCBI
HuRef1483,745,116 - 83,755,273 (+)NCBIHuRef
CHM1_114103,504,274 - 103,514,279 (+)NCBICHM1_1
T2T-CHM13v2.01497,330,672 - 97,354,998 (+)NCBIT2T-CHM13v2.0
Exoc3l4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,383,864 - 111,398,114 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,383,451 - 111,398,112 (+)EnsemblGRCm39 Ensembl
GRCm3812111,417,430 - 111,431,680 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,417,017 - 111,431,678 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712112,655,641 - 112,669,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612111,865,397 - 111,878,991 (+)NCBIMGSCv36mm8
Celera12112,607,549 - 112,621,304 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.98NCBI
Exoc3l4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,140,485 - 2,152,290 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555382,140,599 - 2,155,781 (+)NCBIChiLan1.0ChiLan1.0
EXOC3L4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,255,048 - 104,265,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114103,471,547 - 103,481,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01483,716,816 - 83,732,656 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114103,530,535 - 103,545,316 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14103,535,510 - 103,545,316 (+)Ensemblpanpan1.1panPan2
EXOC3L4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,943,515 - 70,956,211 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,946,994 - 70,955,867 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha870,455,620 - 70,468,383 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0871,220,202 - 71,232,944 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,219,425 - 71,232,600 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,883,775 - 70,896,486 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,948,554 - 70,961,303 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,348,550 - 71,361,306 (+)NCBIUU_Cfam_GSD_1.0
Exoc3l4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,084,056 - 3,098,365 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366211,913,339 - 1,922,202 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366211,913,013 - 1,921,499 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC3L4
(Sus scrofa - pig)		 No map positions available.
EXOC3L4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,072,801 - 81,086,476 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,073,662 - 81,086,476 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605368,262,418 - 68,297,086 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc3l4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,583,605 - 1,590,340 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,583,279 - 1,594,719 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Exoc3l4
36 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:80
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000013460
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1300076Glom8Glomerulus QTL 879e-09kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat

Markers in Region
RH130287  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,466,238 - 130,466,432 (+)MAPPERmRatBN7.2
Rnor_6.06135,880,279 - 135,880,472NCBIRnor6.0
Rnor_5.06144,535,162 - 144,535,355UniSTSRnor5.0
RGSC_v3.46136,186,094 - 136,186,287UniSTSRGSC3.4
Celera6128,023,028 - 128,023,221UniSTS
RH 3.4 Map6813.71UniSTS
Cytogenetic Map6q32UniSTS
AU049742  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,464,206 - 130,464,445 (+)MAPPERmRatBN7.2
Rnor_6.06135,878,247 - 135,878,485NCBIRnor6.0
Rnor_5.06144,537,149 - 144,537,387UniSTSRnor5.0
RGSC_v3.46136,184,062 - 136,184,300UniSTSRGSC3.4
Celera6128,020,996 - 128,021,234UniSTS
Cytogenetic Map6q32UniSTS
BG377375  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,466,524 - 130,466,642 (+)MAPPERmRatBN7.2
Rnor_6.06135,880,565 - 135,880,682NCBIRnor6.0
Rnor_5.06144,534,952 - 144,535,069UniSTSRnor5.0
RGSC_v3.46136,186,380 - 136,186,497UniSTSRGSC3.4
Celera6128,023,314 - 128,023,431UniSTS
RH 3.4 Map6781.61UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000013460   ⟹   ENSRNOP00000013460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6130,452,661 - 130,466,683 (+)Ensembl
Rnor_6.0 Ensembl6135,866,739 - 135,880,721 (+)Ensembl
RefSeq Acc Id: NM_001106759   ⟹   NP_001100229
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,273,873 - 136,287,397 (+)NCBI
mRatBN7.26130,452,680 - 130,466,204 (+)NCBI
Rnor_6.06135,866,720 - 135,880,244 (+)NCBI
Rnor_5.06144,534,910 - 144,549,565 (-)NCBI
RGSC_v3.46136,172,535 - 136,186,059 (+)RGD
Celera6128,009,469 - 128,022,993 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240573   ⟹   XP_006240635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,277,978 - 136,287,877 (+)NCBI
mRatBN7.26130,456,720 - 130,466,684 (+)NCBI
Rnor_6.06135,870,737 - 135,880,724 (+)NCBI
Rnor_5.06144,534,910 - 144,549,565 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240576   ⟹   XP_006240638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,278,096 - 136,287,877 (+)NCBI
mRatBN7.26130,456,903 - 130,466,684 (+)NCBI
Rnor_6.06135,870,979 - 135,880,724 (+)NCBI
Rnor_5.06144,534,910 - 144,549,565 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063261785   ⟹   XP_063117855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,273,857 - 136,287,877 (+)NCBI
RefSeq Acc Id: NP_001100229   ⟸   NM_001106759
- UniProtKB: B2GUV9 (UniProtKB/TrEMBL),   A6KBQ7 (UniProtKB/TrEMBL),   A6KBQ8 (UniProtKB/TrEMBL),   F7F7D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240635   ⟸   XM_006240573
- Peptide Label: isoform X1
- UniProtKB: B2GUV9 (UniProtKB/TrEMBL),   A6KBQ7 (UniProtKB/TrEMBL),   A6KBQ8 (UniProtKB/TrEMBL),   F7F7D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240638   ⟸   XM_006240576
- Peptide Label: isoform X1
- UniProtKB: B2GUV9 (UniProtKB/TrEMBL),   A6KBQ7 (UniProtKB/TrEMBL),   A6KBQ8 (UniProtKB/TrEMBL),   F7F7D0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013460   ⟸   ENSRNOT00000013460
RefSeq Acc Id: XP_063117855   ⟸   XM_063261785
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2GUV9-F1-model_v2 AlphaFold B2GUV9 1-721 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694838
Promoter ID:EPDNEW_R5362
Type:single initiation site
Name:Exoc3l4_1
Description:exocyst complex component 3-like 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06135,866,701 - 135,866,761EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307749 AgrOrtholog
BioCyc Gene G2FUF-35851 BioCyc
Ensembl Genes ENSRNOG00000010111 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013460.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.70 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7100899 IMAGE-MGC_LOAD
InterPro EXOC3/Sec6_C UniProtKB/TrEMBL
  Sec6 UniProtKB/TrEMBL
KEGG Report rno:299338 UniProtKB/TrEMBL
MGC_CLONE MGC:187405 IMAGE-MGC_LOAD
NCBI Gene 299338 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 3-LIKE PROTEIN 4 UniProtKB/TrEMBL
  Sec6 UniProtKB/TrEMBL
Pfam Sec6 UniProtKB/TrEMBL
PhenoGen Exoc3l4 PhenoGen
RatGTEx ENSRNOG00000010111 RatGTEx
UniProt A6KBQ7 ENTREZGENE, UniProtKB/TrEMBL
  A6KBQ8 ENTREZGENE, UniProtKB/TrEMBL
  B2GUV9 ENTREZGENE
  F7F7D0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B2GUV9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-05-25 Exoc3l4  exocyst complex component 3-like 4  RGD1307749  similar to RIKEN cDNA 1600013K19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1307749  similar to RIKEN cDNA 1600013K19   RGD1307749_predicted  similar to RIKEN cDNA 1600013K19 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1307749_predicted  similar to RIKEN cDNA 1600013K19 (predicted)  LOC299338_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC299338_predicted  similar to RIKEN cDNA 1600013K19 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL