Uimc1 (ubiquitin interaction motif containing 1) - Rat Genome Database

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Gene: Uimc1 (ubiquitin interaction motif containing 1) Rattus norvegicus
Analyze
Symbol: Uimc1
Name: ubiquitin interaction motif containing 1
RGD ID: 1307009
Description: Predicted to enable histone binding activity; modification-dependent protein binding activity; and nuclear retinoid X receptor binding activity. Predicted to be involved in several processes, including DNA repair-dependent chromatin remodeling; mitotic G2 DNA damage checkpoint signaling; and regulation of nucleobase-containing compound metabolic process. Predicted to be located in nuclear body. Predicted to be part of BRCA1-A complex. Predicted to be active in site of double-strand break. Orthologous to human UIMC1 (ubiquitin interaction motif containing 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BRCA1-A complex subunit RAP80; LOC290997; receptor-associated protein 80; RGD1307009; similar to retinoid x receptor interacting protein; ubiquitin interaction motif-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,528,923 - 9,597,967 (+)NCBIGRCr8
mRatBN7.2179,523,793 - 9,592,810 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,527,794 - 9,592,799 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,545,179 - 9,610,171 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01711,074,182 - 11,139,282 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,541,582 - 9,606,574 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01710,061,915 - 10,130,921 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,065,947 - 10,130,907 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01712,169,049 - 12,239,764 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,579,709 - 15,644,888 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11715,579,708 - 15,644,885 (+)NCBI
Celera179,605,684 - 9,670,784 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
BRCA1-A complex  (IBA,IEA,ISO,ISS)
nuclear body  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (ISO,ISS)
site of double-strand break  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:7760852   PMID:12080054   PMID:17525340   PMID:17525341   PMID:17525342   PMID:17643121   PMID:19202061   PMID:19261746   PMID:19261748   PMID:19261749   PMID:22742833  


Genomics

Comparative Map Data
Uimc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,528,923 - 9,597,967 (+)NCBIGRCr8
mRatBN7.2179,523,793 - 9,592,810 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,527,794 - 9,592,799 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,545,179 - 9,610,171 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01711,074,182 - 11,139,282 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,541,582 - 9,606,574 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01710,061,915 - 10,130,921 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,065,947 - 10,130,907 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01712,169,049 - 12,239,764 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,579,709 - 15,644,888 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11715,579,708 - 15,644,885 (+)NCBI
Celera179,605,684 - 9,670,784 (+)NCBICelera
Cytogenetic Map17p14NCBI
UIMC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385176,905,005 - 177,022,602 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5176,905,005 - 177,022,633 (-)EnsemblGRCh38hg38GRCh38
GRCh375176,332,006 - 176,433,795 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365176,264,612 - 176,366,049 (-)NCBINCBI36Build 36hg18NCBI36
Celera5172,067,890 - 172,170,216 (+)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5171,254,718 - 171,355,942 (-)NCBIHuRef
CHM1_15175,764,210 - 175,866,189 (-)NCBICHM1_1
T2T-CHM13v2.05177,450,819 - 177,566,146 (-)NCBIT2T-CHM13v2.0
Uimc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,175,693 - 55,248,176 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,175,693 - 55,248,113 (-)EnsemblGRCm39 Ensembl
GRCm381355,027,880 - 55,100,363 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,027,880 - 55,100,300 (-)EnsemblGRCm38mm10GRCm38
MGSCv371355,129,241 - 55,201,656 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,037,502 - 55,109,917 (-)NCBIMGSCv36mm8
Celera1356,088,803 - 56,161,302 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1329.8NCBI
Uimc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540829,154,629 - 29,274,856 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540829,154,373 - 29,274,817 (-)NCBIChiLan1.0ChiLan1.0
UIMC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24171,988,343 - 172,104,166 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15170,127,854 - 170,243,705 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05172,205,958 - 172,321,758 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15179,272,208 - 179,390,215 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5179,271,577 - 179,374,229 (-)Ensemblpanpan1.1panPan2
UIMC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1436,339,711 - 36,467,035 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl436,354,922 - 36,466,880 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha436,306,323 - 36,433,335 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0436,704,960 - 36,832,383 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl436,705,034 - 36,832,347 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,531,498 - 36,658,474 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0436,719,094 - 36,846,322 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0437,226,943 - 37,354,416 (+)NCBIUU_Cfam_GSD_1.0
Uimc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,118,891 - 122,235,431 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365971,143,835 - 1,260,339 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UIMC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,929,267 - 81,036,448 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,895,631 - 81,040,712 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2282,633,416 - 82,643,935 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2282,469,138 - 82,571,850 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UIMC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12378,912,434 - 79,010,695 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2378,911,234 - 79,010,264 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607510,074,575 - 10,173,415 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uimc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473313,096,286 - 13,242,372 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473313,096,572 - 13,240,685 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uimc1
242 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:23
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000022703
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000022703   ⟹   ENSRNOP00000022704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,527,794 - 9,592,799 (+)Ensembl
Rnor_6.0 Ensembl1710,065,947 - 10,130,907 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091200   ⟹   ENSRNOP00000073299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,528,075 - 9,592,796 (+)Ensembl
Rnor_6.0 Ensembl1710,066,187 - 10,130,906 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097899   ⟹   ENSRNOP00000083903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,527,834 - 9,592,796 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100760   ⟹   ENSRNOP00000089886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,528,075 - 9,592,552 (+)Ensembl
RefSeq Acc Id: NM_001013884   ⟹   NP_001013906
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,532,983 - 9,597,967 (+)NCBI
mRatBN7.2179,527,834 - 9,592,799 (+)NCBI
Rnor_6.01710,065,947 - 10,130,910 (+)NCBI
Rnor_5.01712,169,049 - 12,239,764 (+)NCBI
RGSC_v3.41715,579,709 - 15,644,888 (+)RGD
Celera179,605,684 - 9,670,784 (+)RGD
Sequence:
RefSeq Acc Id: XM_017600476   ⟹   XP_017455965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,533,503 - 9,597,967 (+)NCBI
mRatBN7.2179,528,265 - 9,592,810 (+)NCBI
Rnor_6.01710,074,184 - 10,130,921 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095470   ⟹   XP_038951398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,533,503 - 9,597,967 (+)NCBI
mRatBN7.2179,528,009 - 9,592,810 (+)NCBI
RefSeq Acc Id: XM_039095471   ⟹   XP_038951399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,528,955 - 9,597,967 (+)NCBI
mRatBN7.2179,525,883 - 9,592,810 (+)NCBI
RefSeq Acc Id: XM_039095472   ⟹   XP_038951400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,533,651 - 9,597,967 (+)NCBI
mRatBN7.2179,528,531 - 9,592,810 (+)NCBI
RefSeq Acc Id: XM_063276145   ⟹   XP_063132215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,528,957 - 9,597,967 (+)NCBI
RefSeq Acc Id: XM_063276146   ⟹   XP_063132216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,528,923 - 9,597,967 (+)NCBI
RefSeq Acc Id: XM_063276147   ⟹   XP_063132217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,532,088 - 9,597,967 (+)NCBI
RefSeq Acc Id: XR_010058818
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,533,503 - 9,583,493 (+)NCBI
RefSeq Acc Id: NP_001013906   ⟸   NM_001013884
- UniProtKB: Q5PQK4 (UniProtKB/Swiss-Prot),   A0A8I6ALX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455965   ⟸   XM_017600476
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ALX5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073299   ⟸   ENSRNOT00000091200
Ensembl Acc Id: ENSRNOP00000022704   ⟸   ENSRNOT00000022703
RefSeq Acc Id: XP_038951399   ⟸   XM_039095471
- Peptide Label: isoform X2
- UniProtKB: Q5PQK4 (UniProtKB/Swiss-Prot),   A0A8I6ALX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951398   ⟸   XM_039095470
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K556 (UniProtKB/TrEMBL),   A0A8I6ALX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951400   ⟸   XM_039095472
- Peptide Label: isoform X2
- UniProtKB: Q5PQK4 (UniProtKB/Swiss-Prot),   A0A8I6ALX5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089886   ⟸   ENSRNOT00000100760
Ensembl Acc Id: ENSRNOP00000083903   ⟸   ENSRNOT00000097899
RefSeq Acc Id: XP_063132216   ⟸   XM_063276146
- Peptide Label: isoform X2
- UniProtKB: Q5PQK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063132215   ⟸   XM_063276145
- Peptide Label: isoform X2
- UniProtKB: Q5PQK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063132217   ⟸   XM_063276147
- Peptide Label: isoform X4
Protein Domains
UBZ4-type   UIM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQK4-F1-model_v2 AlphaFold Q5PQK4 1-726 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700315
Promoter ID:EPDNEW_R10839
Type:initiation region
Name:Uimc1_1
Description:ubiquitin interaction motif containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01710,065,963 - 10,066,023EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307009 AgrOrtholog
BioCyc Gene G2FUF-10191 BioCyc
Ensembl Genes ENSRNOG00000016891 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055013752 UniProtKB/Swiss-Prot
  ENSRNOG00060018934 UniProtKB/Swiss-Prot
  ENSRNOG00065025177 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022703.7 UniProtKB/TrEMBL
  ENSRNOT00000091200.2 UniProtKB/TrEMBL
  ENSRNOT00000097899.1 UniProtKB/TrEMBL
  ENSRNOT00000100760.1 UniProtKB/TrEMBL
  ENSRNOT00055023661 UniProtKB/Swiss-Prot
  ENSRNOT00060032811 UniProtKB/Swiss-Prot
  ENSRNOT00065043382 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.250.1800 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131093 IMAGE-MGC_LOAD
InterPro Rad18_UBZ4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAP80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAP80_UIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UIM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:290997 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95177 IMAGE-MGC_LOAD
NCBI Gene 290997 ENTREZGENE
PANTHER BRCA1-A COMPLEX SUBUNIT RAP80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15932 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RAP80_UIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Uimc1 PhenoGen
PROSITE UIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_UBZ4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016891 RatGTEx
  ENSRNOG00055013752 RatGTEx
  ENSRNOG00060018934 RatGTEx
  ENSRNOG00065025177 RatGTEx
SMART UIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K556 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZY96_RAT UniProtKB/TrEMBL
  A0A8I6ALX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QD19_RAT UniProtKB/TrEMBL
  Q5PQK4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Uimc1  ubiquitin interaction motif containing 1  RGD1307009  similar to retinoid x receptor interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1307009  similar to retinoid x receptor interacting protein  RGD1307009_predicted  similar to retinoid x receptor interacting protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307009_predicted  similar to retinoid x receptor interacting protein (predicted)  LOC290997_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC290997_predicted  similar to retinoid x receptor interacting protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL