Tmem123 (transmembrane protein 123) - Rat Genome Database

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Gene: Tmem123 (transmembrane protein 123) Rattus norvegicus
Analyze
Symbol: Tmem123
Name: transmembrane protein 123
RGD ID: 1305625
Description: Predicted to be located in external side of plasma membrane. Predicted to be active in cytoplasmic vesicle. Orthologous to human TMEM123 (transmembrane protein 123); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363013; porimin; RGD1305625; similar to RIKEN cDNA 2310075C12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8813,206,907 - 13,237,069 (+)NCBIGRCr8
mRatBN7.284,922,077 - 4,952,228 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl84,922,098 - 4,952,224 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx88,883,450 - 8,913,390 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.087,181,230 - 7,211,169 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.085,181,742 - 5,211,908 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.085,967,373 - 5,997,387 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl85,967,463 - 5,997,383 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.085,969,112 - 5,999,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.484,604,130 - 4,632,932 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.184,604,129 - 4,632,932 (+)NCBI
Celera86,478,699 - 6,512,657 (+)NCBICelera
Cytogenetic Map8q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (EXP)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
glucose  (EXP)
glycidol  (EXP)
herbicide  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
irinotecan  (ISO)
L-ethionine  (EXP)
L-methionine  (ISO)
methamphetamine  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
omeprazole  (EXP)
paracetamol  (EXP)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP)
SCH 23390  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
T-2 toxin  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9600958   PMID:11481458   PMID:15489334  


Genomics

Comparative Map Data
Tmem123
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8813,206,907 - 13,237,069 (+)NCBIGRCr8
mRatBN7.284,922,077 - 4,952,228 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl84,922,098 - 4,952,224 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx88,883,450 - 8,913,390 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.087,181,230 - 7,211,169 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.085,181,742 - 5,211,908 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.085,967,373 - 5,997,387 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl85,967,463 - 5,997,383 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.085,969,112 - 5,999,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.484,604,130 - 4,632,932 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.184,604,129 - 4,632,932 (+)NCBI
Celera86,478,699 - 6,512,657 (+)NCBICelera
Cytogenetic Map8q11NCBI
TMEM123
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811102,396,332 - 102,452,765 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11102,396,332 - 102,470,384 (-)EnsemblGRCh38hg38GRCh38
GRCh3711102,267,063 - 102,323,496 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611101,772,266 - 101,828,985 (-)NCBINCBI36Build 36hg18NCBI36
Celera1199,428,614 - 99,485,334 (-)NCBICelera
Cytogenetic Map11q22.2NCBI
HuRef1198,193,581 - 98,250,555 (-)NCBIHuRef
CHM1_111102,150,071 - 102,206,782 (-)NCBICHM1_1
T2T-CHM13v2.011102,398,458 - 102,454,892 (-)NCBIT2T-CHM13v2.0
Tmem123
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3997,764,078 - 7,794,334 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl97,764,042 - 7,794,334 (+)EnsemblGRCm39 Ensembl
GRCm3897,764,077 - 7,794,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl97,764,041 - 7,794,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv3797,764,077 - 7,794,333 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3697,764,649 - 7,794,854 (+)NCBIMGSCv36mm8
Celera95,156,034 - 5,186,291 (+)NCBICelera
Cytogenetic Map9A1NCBI
cM Map92.46NCBI
Tmem123
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554125,690,988 - 5,741,109 (-)NCBIChiLan1.0ChiLan1.0
TMEM123
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29103,195,323 - 103,251,788 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111104,283,691 - 104,340,392 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01197,342,669 - 97,399,342 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111100,835,988 - 100,892,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11100,835,988 - 100,892,618 (-)Ensemblpanpan1.1panPan2
TMEM123
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1529,223,682 - 29,284,076 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha529,174,439 - 29,233,164 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0529,277,988 - 29,336,816 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl529,277,955 - 29,336,818 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1529,312,550 - 29,370,582 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0529,192,177 - 29,251,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0529,367,494 - 29,425,743 (+)NCBIUU_Cfam_GSD_1.0
Tmem123
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494786,040,980 - 86,102,981 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365515,447,563 - 5,495,530 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365515,433,528 - 5,495,529 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM123
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl933,084,822 - 33,160,311 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1933,084,820 - 33,160,346 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2937,033,047 - 37,080,716 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM123
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1193,767,359 - 93,822,539 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl193,765,365 - 93,822,806 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604332,041,026 - 32,096,611 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Tmem123
168 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:764
Count of miRNA genes:296
Interacting mature miRNAs:382
Transcripts:ENSRNOT00000014065
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat

Markers in Region
RH130069  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2158,874,499 - 58,874,706 (-)MAPPERmRatBN7.2
mRatBN7.284,951,896 - 4,952,103 (+)MAPPERmRatBN7.2
Rnor_6.085,997,056 - 5,997,262NCBIRnor6.0
Rnor_6.01116,171,288 - 116,171,494NCBIRnor6.0
Rnor_5.085,998,795 - 5,999,001UniSTSRnor5.0
Rnor_5.01117,340,899 - 117,341,105UniSTSRnor5.0
RGSC_v3.4156,711,904 - 56,712,110UniSTSRGSC3.4
RGSC_v3.484,632,601 - 4,632,807UniSTSRGSC3.4
Celera86,512,326 - 6,512,532UniSTS
Celera155,045,320 - 55,045,526UniSTS
Cytogenetic Map8q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000014065   ⟹   ENSRNOP00000014065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl84,922,098 - 4,952,224 (+)Ensembl
Rnor_6.0 Ensembl85,993,941 - 5,997,383 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086251   ⟹   ENSRNOP00000072501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl85,967,463 - 5,995,249 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093895   ⟹   ENSRNOP00000085366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl84,922,098 - 4,952,220 (+)Ensembl
RefSeq Acc Id: NM_001014205   ⟹   NP_001014227
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8813,206,923 - 13,237,069 (+)NCBI
mRatBN7.284,922,077 - 4,952,228 (+)NCBI
Rnor_6.085,967,373 - 5,997,387 (+)NCBI
Rnor_5.085,969,112 - 5,999,126 (+)NCBI
RGSC_v3.484,604,130 - 4,632,932 (+)RGD
Celera86,478,699 - 6,512,657 (+)RGD
Sequence:
RefSeq Acc Id: XM_063265682   ⟹   XP_063121752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8813,206,907 - 13,237,069 (+)NCBI
RefSeq Acc Id: NP_001014227   ⟸   NM_001014205
- Peptide Label: precursor
- UniProtKB: Q5HZB0 (UniProtKB/Swiss-Prot),   A0A8I6A004 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014065   ⟸   ENSRNOT00000014065
Ensembl Acc Id: ENSRNOP00000072501   ⟸   ENSRNOT00000086251
Ensembl Acc Id: ENSRNOP00000085366   ⟸   ENSRNOT00000093895
RefSeq Acc Id: XP_063121752   ⟸   XM_063265682
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5HZB0-F1-model_v2 AlphaFold Q5HZB0 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695740
Promoter ID:EPDNEW_R6261
Type:initiation region
Name:Tmem123_1
Description:transmembrane protein 123
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.085,967,399 - 5,967,459EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305625 AgrOrtholog
BioCyc Gene G2FUF-31770 BioCyc
Ensembl Genes ENSRNOG00000010584 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055005910 UniProtKB/Swiss-Prot
  ENSRNOG00060015648 UniProtKB/Swiss-Prot
  ENSRNOG00065002628 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000014065 UniProtKB/TrEMBL
  ENSRNOT00000014065.8 UniProtKB/Swiss-Prot
  ENSRNOT00000093895.1 UniProtKB/TrEMBL
  ENSRNOT00055009560 UniProtKB/Swiss-Prot
  ENSRNOT00060026804 UniProtKB/Swiss-Prot
  ENSRNOT00065003509 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7307876 IMAGE-MGC_LOAD
InterPro CD164_MGC24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:363013 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105690 IMAGE-MGC_LOAD
NCBI Gene 363013 ENTREZGENE
PANTHER PORIMIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11337 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MGC-24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem123 PhenoGen
RatGTEx ENSRNOG00000010584 RatGTEx
  ENSRNOG00055005910 RatGTEx
  ENSRNOG00060015648 RatGTEx
  ENSRNOG00065002628 RatGTEx
UniProt A0A8I6A004 ENTREZGENE, UniProtKB/TrEMBL
  A6JN42_RAT UniProtKB/TrEMBL
  A6JN43_RAT UniProtKB/TrEMBL
  F1MA50_RAT UniProtKB/TrEMBL
  PORIM_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Tmem123  transmembrane protein 123  RGD1305625  similar to RIKEN cDNA 2310075C12  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1305625  similar to RIKEN cDNA 2310075C12  RGD1305625_predicted  similar to RIKEN cDNA 2310075C12 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305625_predicted  similar to RIKEN cDNA 2310075C12 (predicted)  LOC363013_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC363013_predicted  similar to RIKEN cDNA 2310075C12 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL