Advanced Search (OLGA)

Gene: SIN3A (SIN3 transcription regulator family member A) Canis lupus familiaris

Analyze

Symbol:

SIN3A

Name:

SIN3 transcription regulator family member A

RGD ID:

12266760

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); RNA binding (ortholog); INVOLVED IN cellular response to dopamine (ortholog); cellular response to glucose stimulus (ortholog); cellular response to tert-butyl hydroperoxide (ortholog); PARTICIPATES IN DNA modification pathway; Hedgehog signaling pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog); protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

paired amphipathic helix protein Sin3a; SIN3 homolog A, transcription regulator; SIN3 transcription regulator homolog A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	38,231,844 - 38,306,665 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	38,232,680 - 38,382,635 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	38,162,224 - 38,237,534 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	38,436,823 - 38,512,188 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	38,436,823 - 38,508,325 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	38,389,129 - 38,464,067 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	38,434,094 - 38,509,422 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	38,670,990 - 38,745,906 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Agenesis of Corpus Callosum (ISO)

autism spectrum disorder (ISO)

autistic disorder (ISO)

chromosome 15q24 deletion syndrome (ISO)

Craniofacial Abnormalities (ISO)

Dwarfism (ISO)

Fetal Growth Retardation (ISO)

genetic disease (ISO)

Huntington's disease (ISO)

hydrocephalus (ISO)

Hyperalgesia (ISO)

intellectual disability (ISO)

microcephaly (ISO)

Neurodevelopmental Disorders (ISO)

transient cerebral ischemia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of innate immune response (IEA)

cellular response to dopamine (ISO)

cellular response to glucose stimulus (ISO)

cellular response to tert-butyl hydroperoxide (ISO)

cerebral cortex neuron differentiation (IEA)

DNA replication (ISO)

DNA-templated transcription (IEA)

hematopoietic progenitor cell differentiation (ISO)

heterochromatin formation (IEA)

in utero embryonic development (ISO)

intracellular protein localization (ISO)

negative regulation of apoptotic process (ISO)

negative regulation of circadian rhythm (IEA)

negative regulation of DNA-templated transcription (IEA)

negative regulation of protein localization to nucleus (IEA)

negative regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

positive regulation of defense response to virus by host (IEA)

positive regulation of G2/M transition of mitotic cell cycle (ISO)

positive regulation of neuron differentiation (IEA)

regulation of axon extension (IEA)

regulation of DNA-templated transcription (IEA,ISO)

regulation of gene expression (IEA)

regulation of hormone levels (ISO)

response to methylglyoxal (ISO)

rhythmic process (IEA)

type I interferon-mediated signaling pathway (IEA)

Cellular Component

chromatin (IBA,ISO)

chromosome (IEA)

histone deacetylase complex (IEA)

kinetochore (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA,ISO)

protein-containing complex (IEA,ISO)

Sin3-type complex (IBA,IEA)

transcription regulator complex (IEA)

transcription repressor complex (IEA)

Molecular Function

chromatin binding (IEA)

DNA binding (IEA)

protein binding (ISO)

protein-containing complex binding (ISO)

RNA binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA)

transcription corepressor activity (IBA,IEA)

transcription regulator inhibitor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

DNA modification pathway (ISO)

Hedgehog signaling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SIN3A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	38,231,844 - 38,306,665 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	38,232,680 - 38,382,635 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	38,162,224 - 38,237,534 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	38,436,823 - 38,512,188 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	38,436,823 - 38,508,325 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	38,389,129 - 38,464,067 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	38,434,094 - 38,509,422 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	38,670,990 - 38,745,906 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

SIN3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	75,369,379 - 75,455,815 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	75,369,379 - 75,455,842 (-)	Ensembl			hg38	GRCh38
GRCh37	15	75,661,720 - 75,748,156 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	73,450,328 - 73,530,979 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	15	73,450,329 - 73,530,979	NCBI
Celera	15	52,588,161 - 52,674,772 (-)	NCBI		Celera
Cytogenetic Map	15	q24.2	NCBI
HuRef	15	52,420,097 - 52,506,377 (-)	NCBI		HuRef
CHM1_1	15	75,780,322 - 75,866,699 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	73,239,476 - 73,325,901 (-)	NCBI		T2T-CHM13v2.0

Sin3a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	56,979,271 - 57,035,652 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	56,979,324 - 57,035,650 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	57,071,991 - 57,128,368 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	57,072,040 - 57,128,366 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	56,919,847 - 56,976,175 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	56,874,519 - 56,926,290 (+)	NCBI		MGSCv36	mm8
Celera	9	54,295,792 - 54,352,077 (+)	NCBI		Celera
Cytogenetic Map	9	B	NCBI
cM Map	9	30.89	NCBI

Sin3a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	66,377,471 - 66,432,150 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	66,381,657 - 66,434,542 (+)	Ensembl				GRCr8
mRatBN7.2	8	57,481,539 - 57,536,195 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	57,481,573 - 57,536,192 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	63,009,384 - 63,059,903 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	61,288,238 - 61,338,757 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	59,152,689 - 59,203,208 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	61,748,590 - 61,803,314 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	61,762,768 - 61,803,099 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	60,323,131 - 60,373,454 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	60,832,595 - 60,884,764 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	56,953,107 - 57,002,726 (+)	NCBI		Celera
RGSC_v3.1	8	60,851,648 - 60,904,028 (+)	NCBI
Cytogenetic Map	8	q24	NCBI

Sin3a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	2,808,130 - 2,870,450 (+)	Ensembl
ChiLan1.0	NW_004955450	2,804,551 - 2,870,450 (+)	NCBI	ChiLan1.0	ChiLan1.0

SIN3A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	64,570,768 - 64,656,834 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	68,736,261 - 68,820,731 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	54,285,587 - 54,371,376 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	73,881,500 - 73,966,560 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	73,881,500 - 73,966,506 (-)	Ensembl			panPan2	panpan1.1

Sin3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	116,357,106 - 116,416,720 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	34,204,524 - 34,260,564 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	34,206,084 - 34,260,538 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SIN3A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	58,176,167 - 58,245,971 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	58,171,821 - 58,246,126 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	62,861,102 - 62,934,329 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SIN3A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	7,971,208 - 8,060,888 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	7,975,484 - 8,058,278 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	133,632,174 - 133,722,014 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sin3a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624894	301,082 - 362,683 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624894	300,027 - 388,397 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sin3a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	50,986,820 - 51,041,444 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in SIN3A
846 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014109583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038443000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038443001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038443002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038461288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038461289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038517426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038517427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038517428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038581033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038581034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038581035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038645403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038645404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038645406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_535546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00845035718 ⟹ ENSCAFP00845027945

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	30	38,436,823 - 38,508,325 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845035855 ⟹ ENSCAFP00845028054

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	30	38,484,971 - 38,508,325 (-)	Ensembl

RefSeq Acc Id:

XM_014109583 ⟹ XP_013965058

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	30	38,231,844 - 38,306,665 (-)	NCBI
Dog10K_Boxer_Tasha	30	38,162,224 - 38,237,534 (-)	NCBI

Sequence:

show sequence

GGGGGCGGTCCCCCCCATTCAGGACTCCTCGCCTGGCTCGGAAGGTTTTGTGGTGCATCCCTGA
GCATGAACGCAGAATGAAGCGACGTTTGGATGACCAGGAGTCACCGGTGTATGCGGCCCAGCAG
CGTCGGATCCCTGGTAGCACAGAGGCTTTTCCTCACCAGCACCGGGTGCTTGCCCCTGCCCCCC
CTGTGTATGAAGCAGTGTCTGAGACCATGCAGTCAGCTACGGGAATTCAGTACTCTGTGACACC
CAGCTATCAGGTTTCAGCAGTGCCACAGAGCTCTGGCAGTCACGGGCCCACCATCGCAGCGGTT
CATAGCAGTCATCATCACCCAGCAGCTGTGCAGCCCCACGGAGGCCAGGTGGTCCAGAGTCATG
CTCATCCTGCCCCACCAGTTGCACCAGTGCAGGGACAGCAGCAATTTCAGAGGCTTAAGGTGGA
GGATGCGCTGTCCTATCTTGACCAGGTGAAGCTGCAGTTTGGTAGTCAGCCTCAGGTCTACAAT
GATTTCCTTGACATCATGAAGGAATTTAAATCTCAGAGCATTGACACTCCAGGAGTGATTAGTC
GTGTGTCCCAGCTGTTCAAAGGACATCCCGACCTGATTATGGGCTTCAATACCTTCTTGCCCCC
TGGCTACAAGATTGAGGTGCAAACCAATGACATGGTGAATGTGACAACTCCTGGCCAGGTTCAT
CAGATCCCCACCCATGGCATCCAGCCCCAGCCTCAGCCACCACCCCAGCATCCTTCTCAGCCTT
CAGCCCAGTCAGCCCCAGCTCCTGCCCAACCAGCTCTTCAGCCCCCACCTGCCAAAGTCAGCAA
GCCTTCCCAACTACAAGCACATACTCCAGCCAGTCAGCAGACACCCCCTCTCCCACCATATGCA
TCCCCACGCTCTCCACCTGTCCAGCCTCATACACCAGTGACAATCTCGTTGGGAACGGCCCCAT
CCTTGCAGAACAATCAGCCTGTGGAGTTTAATCATGCCATCAACTATGTTAATAAAATCAAGAA
CAGGTTCCAGGGCCAACCAGACATCTACAAAGCATTTTTGGAAATTTTGCACACATACCAGAAA
GAGCAACGAAATGCCAAGGAAGCTGGAGGAAACTACACTCCGGCATTGACTGAACAGGAGGTTT
ATGCCCAGGTGGCTCGTCTTTTTAAAAATCAGGAAGATCTGTTGTCAGAGTTTGGACAGTTCCT
ACCAGATGCCAACAGCTCGGTGCTTTTAAGCAAAACAACAGCTGAAAAGGTTGATTCTGTGAGA
AATGACCATGGAGGCACTGTGAAGAAGCCCCAGCTGAACAACAAGCCTCAGAGGCCCAATCAGA
ACGGCTGCCAGATCCGTAGGCACTCTGGAACGGGGACCACCCCCCCGGTAAAGAAGAAACCTAA
ACTGCTCAGCCTAAAGGATTCCTCCATGGCAGATGCCAGCAAGCACGGTGTAGGAACTGAATCC
TTATTTTTTGATAAGGTCCGAAAGGCTCTGAGGAGCGCAGAGGCCTATGAGAATTTCCTGCGTT
GTCTTGTTATCTTTAACCAGGAGGTGATCTCTCGGGCTGAGCTTGTGCAGCTAGTCTCTCCTTT
CCTGGGGAAATTCCCTGAATTGTTTAATTGGTTTAAAAACTTTCTGGGCTATAAGGAGTCTGTA
CATCTGGAAACCTTTCCAAAGGAACGAGCCACAGAGGGCATTGCCATGGAGATAGATTATGCTT
CTTGTAAACGGTTGGGCTCCAGCTATCGAGCCCTACCAAAGAGTTACCAGCAGCCCAAGTGTAC
AGGACGGACTCCTCTCTGCAAAGAGGTTTTAAATGATACTTGGGTTTCCTTCCCTTCCTGGTCT
GAGGACTCCACCTTTGTTAGTTCCAAGAAAACCCAGTATGAAGAACACATCTATCGTTGTGAAG
ATGAGCGCTTTGAGCTTGATGTAGTTTTAGAGACCAATCTGGCAACGATTCGGGTTCTGGAAGC
AATACAGAAGAAGCTTTCTCGCTTGTCTGCTGAGGAACAAGCCAAATTTCGCTTGGACAACACC
CTTGGGGGCACGTCGGAAGTTATTCATCGAAAAGCACTCCAGAGGATATATGCTGATAAAGCAG
CTGACATCATCGATGGTCTGAGGAAGAACCCCTCCATTGCCGTCCCAATTGTCCTTAAAAGATT
GAAGATGAAAGAGGAAGAATGGCGAGAAGCTCAGAGAGGATTTAACAAGGTGTGGAGAGAGCAA
AATGAGAAATACTACTTGAAGTCTTTGGACCACCAGGGCATCAACTTTAAACAGAACGACACCA
AGGTCCTGAGGTCAAAGAGCTTACTCAACGAGATTGAGAGCATCTATGATGAGAGGCAAGAGCA
GGCTACAGAAGACAATGCTGGTGTACCTATTGGCCCACACCTCTCACTTGCATATGAAGACAAA
CAGATTCTGGAAGATGCTGCTGCTTTGATTATCCACCACGTGAAGAGGCAGACAGGCATTCAGA
AGGAGGACAAGTATAAAATCAAGCAAATTATGCATCACTTCATTCCAGATCTGCTCTTTGCTCA
GAGAGGTGATCTCTCGGATGTGGAGGAAGAGGAAGAAGAAGAGATGGATGTAGATGAAGCCACA
GGGGCAGCTAAGAAGCACAATGGTGTTGGGGGCAGTCCCCCAAAGTCCAAGCTACTGTTTAGTA
ACACAGCAGCTCAGAAGTTACGAGGGATGGATGAAGTGTACAACCTTTTCTATGTTAATAACAA
CTGGTATATCTTTATGCGACTGCACCAGATCCTCTGCTTGCGGCTCTTGCGGATTTGTTCCCAA
GCTGAACGGCAAATTGAAGAAGAAAACCGAGAGAGAGAGTGGGAACGGGAAGTGCTGGGCATAA
AACGAGACAAGAGTGACAGCCCTGCCATCCAGCTGCGTCTCAAAGAACCTATGGATGTTGACGT
AGAAGATTATTACCCAGCTTTCCTGGACATGGTGCGGAGCCTGCTAGATGGCAACATAGACTCG
TCACAGTACGAAGATTCTCTGAGAGAGATGTTCACCATTCATGCCTACATTGCCTTCACCATGG
ACAAACTAATCCAGAGCATTGTCAGACAGCTGCAGCACATCGTGAGTGATGAGATCTGTGTGCA
GGTGACTGACCTTTATCTGGCGGAAAACAATAATGGGGCCACCGGAGGCCAGCTGAACACGCAG
ACTTCCAGGAGTCTCCTGGAATCAACATATCAGCGGAAGGCTGAGCAACTCATGTCAGATGAGA
ATTGCTTTAAGCTTATGTTTATTCAGAGCCAGGGCCAGGTTCAGCTGACCATTGAGCTCTTGGA
TACAGAAGAGGAAAACTCAGATGACCCTGTAGAAGCAGAGCGTTGGTCAGACTATGTGGAGCGA
TACATGAATTCTGATACTACCTCTCCTGAGCTTCGTGAGCATCTGGCACGGAAACCAGTGTTTC
TCCCAAGGAACCTGAGACGGATCCGGAAATGTCAGCGTGGTCGAGAACAGCAGGAAAAGGAAGG
GAAGGAAGGAAATAGCAAGAAGACCATGGAGAATGTGGATAGCCTGGATAAACTGGAGTGTAGA
TTCAAGTTGAATTCCTACAAGATGGTGTATGTAATCAAGTCAGAGGACTACATGTATCGGAGAA
CAGCGCTGCTCCGGGCTCATCAGTCCCATGAGCGTGTAAGCAAGCGGCTACATCAGAGGTTCCA
GGCCTGGGTAGATAAATGGACCAAGGAGCATGTGCCCCGGGAAATGGCAGCAGAGACCAGCAAG
TGGCTCATGGGTGAGGGGCTGGAGGGCCTGGTGCCCTGTACCACCACCTGTGACACAGAGACCC
TGCACTTTGTGAGCATTAACAAGTACCGTGTCAAATATGGCACAGTGTTCAAAGCCCCATAACT
GCAAAGCCAGAGCAGATAACTTGAGGGGGGTGTGTGTGAGGAGCACGTGCACTCACACACACTG
AAGAAACAAGGAACATGCCTTTCAAGCCTCAATAAAAGCTCTCTGGGACATGGCCACCTGATGA
GTGTGTGGCTGGTGTAACCTGGCACCAAGTGGGCTACATAGAAGGAACGTGGATACCTTACAAA
AGCCAGAGCTGGAACTTTTCCCAAGGGGTTTGGAGTATTAGCCTTCCCTGGAGGGGAAGGAAAT
CCATGCAAGCACAGAGACATGCAGCTTGCTTGCACACACCAGCAGAGCTAAGACTGGAGTCTCC
TGGGGCCTGCCCTTCGATGAAGGAGCCAGATGCTGTTCACACCTTGACTGGATGGGCGCCACTG
ACAGCCTGGGGAAGGGCCCACCGCTCAGATGGATTGTAACTCTGATGGCCACTGCTCCTCCCCT
CCCCCCAAAGGAAAAAAAAACTGGATTGGATTTTTTTTTTTTTTTTCCTGGTCACTCGAGCACA
TCTAGATCACCCATTAGATTTTATCTGGGACCTGCAGTTTGGCTTTGGGATTGATCATCTTGTG
GGTTTTTCCTGACGAATCCCTCGCTGCCCACCCTTTACTCTCTCCTCTGGTTCTCAACCTCAGC
AACTTCAAATCCGTCGTCCTTTTTAGCTCCCGTGGAACTGTTTTGTACCTGCTTCTTTACTAGT
CTACCCTAGTGCCATCCACCAGCTTTACTCTCTGACACACACACACACACACACACACACACAC
ACACACAAATTTTAACTTGGTTTTTCTTTTTTTTTGTAAATAATGTACATACTGTCGATTTTTT
ATTAAAAGAAATATGCTTTGA

hide sequence

RefSeq Acc Id:

XM_038443000 ⟹ XP_038298928

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	38,436,823 - 38,508,229 (-)	NCBI

RefSeq Acc Id:

XM_038443001 ⟹ XP_038298929

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	38,436,823 - 38,508,229 (-)	NCBI

RefSeq Acc Id:

XM_038443002 ⟹ XP_038298930

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	38,436,823 - 38,512,188 (-)	NCBI

RefSeq Acc Id:

XM_038461288 ⟹ XP_038317216

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	30	38,162,224 - 38,233,577 (-)	NCBI

RefSeq Acc Id:

XM_038461289 ⟹ XP_038317217

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	30	38,162,224 - 38,233,577 (-)	NCBI

RefSeq Acc Id:

XM_038517426 ⟹ XP_038373354

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	38,389,129 - 38,460,110 (-)	NCBI

RefSeq Acc Id:

XM_038517427 ⟹ XP_038373355

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	38,389,129 - 38,460,110 (-)	NCBI

RefSeq Acc Id:

XM_038517428 ⟹ XP_038373356

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	38,389,129 - 38,464,067 (-)	NCBI

RefSeq Acc Id:

XM_038581033 ⟹ XP_038436961

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	38,670,990 - 38,741,948 (-)	NCBI

RefSeq Acc Id:

XM_038581034 ⟹ XP_038436962

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	38,670,990 - 38,741,948 (-)	NCBI

RefSeq Acc Id:

XM_038581035 ⟹ XP_038436963

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	38,670,990 - 38,745,906 (-)	NCBI

RefSeq Acc Id:

XM_038645403 ⟹ XP_038501331

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	38,434,094 - 38,505,467 (-)	NCBI

RefSeq Acc Id:

XM_038645404 ⟹ XP_038501332

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	38,434,094 - 38,505,467 (-)	NCBI

RefSeq Acc Id:

XM_038645406 ⟹ XP_038501334

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	38,434,094 - 38,509,422 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013965058	(Get FASTA)	NCBI Sequence Viewer
	XP_038298928	(Get FASTA)	NCBI Sequence Viewer
	XP_038298929	(Get FASTA)	NCBI Sequence Viewer
	XP_038298930	(Get FASTA)	NCBI Sequence Viewer
	XP_038317216	(Get FASTA)	NCBI Sequence Viewer
	XP_038317217	(Get FASTA)	NCBI Sequence Viewer
	XP_038373354	(Get FASTA)	NCBI Sequence Viewer
	XP_038373355	(Get FASTA)	NCBI Sequence Viewer
	XP_038373356	(Get FASTA)	NCBI Sequence Viewer
	XP_038436961	(Get FASTA)	NCBI Sequence Viewer
	XP_038436962	(Get FASTA)	NCBI Sequence Viewer
	XP_038436963	(Get FASTA)	NCBI Sequence Viewer
	XP_038501331	(Get FASTA)	NCBI Sequence Viewer
	XP_038501332	(Get FASTA)	NCBI Sequence Viewer
	XP_038501334	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000042090.3
	ENSCAFP00000061288.1
	ENSCAFP00030018718.1
	ENSCAFP00040034747.1
	ENSCAFP00040034834.1
	ENSCAFP00040034933.1
	ENSCAFP00845027945
	ENSCAFP00845027945.1
	ENSCAFP00845028054.1

RefSeq Acc Id:

XP_013965058 ⟸ XM_014109583

- UniProtKB:

A0A8C0JR57 (UniProtKB/TrEMBL), A0A8C0THK6 (UniProtKB/TrEMBL), A0A8I3PCR3 (UniProtKB/TrEMBL), A0A8C0TBX5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKRRLDDQESPVYAAQQRRIPGSTEAFPHQHRVLAPAPPVYEAVSETMQSATGIQYSVTPSYQV
SAVPQSSGSHGPTIAAVHSSHHHPAAVQPHGGQVVQSHAHPAPPVAPVQGQQQFQRLKVEDALS
YLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKI
EVQTNDMVNVTTPGQVHQIPTHGIQPQPQPPPQHPSQPSAQSAPAPAQPALQPPPAKVSKPSQL
QAHTPASQQTPPLPPYASPRSPPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNKIKNRFQG
QPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDAN
SSVLLSKTTAEKVDSVRNDHGGTVKKPQLNNKPQRPNQNGCQIRRHSGTGTTPPVKKKPKLLSL
KDSSMADASKHGVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKF
PELFNWFKNFLGYKESVHLETFPKERATEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTP
LCKEVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLEAIQKK
LSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKE
EEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQATED
NAGVPIGPHLSLAYEDKQILEDAAALIIHHVKRQTGIQKEDKYKIKQIMHHFIPDLLFAQRGDL
SDVEEEEEEEMDVDEATGAAKKHNGVGGSPPKSKLLFSNTAAQKLRGMDEVYNLFYVNNNWYIF
MRLHQILCLRLLRICSQAERQIEEENREREWEREVLGIKRDKSDSPAIQLRLKEPMDVDVEDYY
PAFLDMVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDL
YLAENNNGATGGQLNTQTSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELLDTEEE
NSDDPVEAERWSDYVERYMNSDTTSPELREHLARKPVFLPRNLRRIRKCQRGREQQEKEGKEGN
SKKTMENVDSLDKLECRFKLNSYKMVYVIKSEDYMYRRTALLRAHQSHERVSKRLHQRFQAWVD
KWTKEHVPREMAAETSKWLMGEGLEGLVPCTTTCDTETLHFVSINKYRVKYGTVFKAP

hide sequence

RefSeq Acc Id:

XP_038373356 ⟸ XM_038517428

RefSeq Acc Id:

XP_038373355 ⟸ XM_038517427

RefSeq Acc Id:

XP_038373354 ⟸ XM_038517426

RefSeq Acc Id:

XP_038501334 ⟸ XM_038645406

RefSeq Acc Id:

XP_038501332 ⟸ XM_038645404

RefSeq Acc Id:

XP_038501331 ⟸ XM_038645403

RefSeq Acc Id:	XP_038298930 ⟸ XM_038443002
- UniProtKB:	A0A8C0JR57 (UniProtKB/TrEMBL), A0A8C0THK6 (UniProtKB/TrEMBL), A0A8I3PCR3 (UniProtKB/TrEMBL), A0A8C0TBX5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038298929 ⟸ XM_038443001
- UniProtKB:	A0A8C0JR57 (UniProtKB/TrEMBL), A0A8C0THK6 (UniProtKB/TrEMBL), A0A8I3PCR3 (UniProtKB/TrEMBL), A0A8C0TBX5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038298928 ⟸ XM_038443000
- UniProtKB:	A0A8C0JR57 (UniProtKB/TrEMBL), A0A8C0THK6 (UniProtKB/TrEMBL), A0A8I3PCR3 (UniProtKB/TrEMBL), A0A8C0TBX5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038317217 ⟸ XM_038461289
- UniProtKB:	A0A8C0JR57 (UniProtKB/TrEMBL), A0A8C0THK6 (UniProtKB/TrEMBL), A0A8I3PCR3 (UniProtKB/TrEMBL), A0A8C0TBX5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038317216 ⟸ XM_038461288
- UniProtKB:	A0A8C0JR57 (UniProtKB/TrEMBL), A0A8C0THK6 (UniProtKB/TrEMBL), A0A8I3PCR3 (UniProtKB/TrEMBL), A0A8C0TBX5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436963 ⟸ XM_038581035
- UniProtKB:	A0A8C0JR57 (UniProtKB/TrEMBL), A0A8C0TBX5 (UniProtKB/TrEMBL), A0A8C0THK6 (UniProtKB/TrEMBL), A0A8I3PCR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436962 ⟸ XM_038581034
- UniProtKB:	A0A8C0JR57 (UniProtKB/TrEMBL), A0A8C0TBX5 (UniProtKB/TrEMBL), A0A8C0THK6 (UniProtKB/TrEMBL), A0A8I3PCR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436961 ⟸ XM_038581033
- UniProtKB:	A0A8C0THK6 (UniProtKB/TrEMBL), A0A8I3PCR3 (UniProtKB/TrEMBL), A0A8C0JR57 (UniProtKB/TrEMBL), A0A8C0TBX5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845027945 ⟸ ENSCAFT00845035718

Ensembl Acc Id:

ENSCAFP00845028054 ⟸ ENSCAFT00845035855

Protein Domains

Histone deacetylase interacting

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000018010	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030011527	UniProtKB/TrEMBL
	ENSCAFG00040021435	UniProtKB/TrEMBL
	ENSCAFG00845020249	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000045591.4	UniProtKB/TrEMBL
	ENSCAFT00000051922.3	UniProtKB/TrEMBL
	ENSCAFT00030021468.1	UniProtKB/TrEMBL
	ENSCAFT00040039818.1	UniProtKB/TrEMBL
	ENSCAFT00040039912.1	UniProtKB/TrEMBL
	ENSCAFT00040040028.1	UniProtKB/TrEMBL
	ENSCAFT00845035718	ENTREZGENE
	ENSCAFT00845035718.1	UniProtKB/TrEMBL
	ENSCAFT00845035855.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1160.11	UniProtKB/TrEMBL
InterPro	HDAC_interact_dom	UniProtKB/TrEMBL
	PAH	UniProtKB/TrEMBL
	PAH_sf	UniProtKB/TrEMBL
	Sin3-like	UniProtKB/TrEMBL
	Sin3_C	UniProtKB/TrEMBL
NCBI Gene	SIN3A	ENTREZGENE
PANTHER	PTHR12346	UniProtKB/TrEMBL
	PTHR12346:SF2	UniProtKB/TrEMBL
Pfam	PAH	UniProtKB/TrEMBL
	Sin3_corepress	UniProtKB/TrEMBL
	Sin3a_C	UniProtKB/TrEMBL
PROSITE	PAH	UniProtKB/TrEMBL
SMART	HDAC_interact	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47762	UniProtKB/TrEMBL
UniProt	A0A8C0JR57	ENTREZGENE
	A0A8C0RHZ2_CANLF	UniProtKB/TrEMBL
	A0A8C0TBX5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0THK6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P8C2_CANLF	UniProtKB/TrEMBL
	A0A8I3PCR3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:46177	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - PID (archival)