| 1000 | 1641894 | Alcrsp12 | Alcohol response QTL 12 | | | response to alcohol trait (VT:0010489) | brain neurotensin receptor 1 density (CMO:0002068) | 9 | 27468639 | 72468639 | Rat | n/a | region | qtl |
| 1000 | 1641911 | Alcrsp13 | Alcohol response QTL 13 | | | response to alcohol trait (VT:0010489) | brain neurotensin receptor 1 density (CMO:0002068) | 9 | 1 | 43718459 | Rat | n/a | region | qtl |
| 1000 | 7207805 | Bmd88 | Bone mineral density QTL 88 | 4 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 9 | 23754024 | 58157242 | Rat | n/a | region | qtl |
| 1000 | 7207814 | Bmd91 | Bone mineral density QTL 91 | 3.5 | | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 9 | 23754144 | 83851531 | Rat | n/a | region | qtl |
| 1000 | 11353957 | Bmd92 | Bone mineral density QTL 92 | | 0.01 | tibia mineral mass (VT:1000283) | volumetric bone mineral density (CMO:0001553) | 9 | 46114199 | 91114199 | Rat | n/a | region | qtl |
| 1000 | 631656 | Bp108 | Blood pressure QTL 108 | 5.97 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 48598251 | 93598251 | Rat | n/a | region | qtl |
| 1000 | 631643 | Bp120 | Blood pressure QTL 120 | 3 | 0.004 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 22071200 | 67071200 | Rat | n/a | region | qtl |
| 1000 | 1300134 | Bp185 | Blood pressure QTL 185 | 3.73 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 61381434 | 104821652 | Rat | n/a | region | qtl |
| 1000 | 1581517 | Bp284 | Blood pressure QTL 284 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 76650629 | 76771824 | Rat | n/a | region | qtl |
| 1000 | 2303170 | Bp332 | Blood pressure QTL 332 | 3.73 | 0.027 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 55847841 | 77026453 | Rat | n/a | region | qtl |
| 1000 | 2303180 | Bp333 | Blood pressure QTL 333 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 56627713 | 78595166 | Rat | n/a | region | qtl |
| 1000 | 2303180 | Bp333 | Blood pressure QTL 333 | | 0.001 | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 9 | 56627713 | 78595166 | Rat | n/a | region | qtl |
| 1000 | 2303180 | Bp333 | Blood pressure QTL 333 | | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 56627713 | 78595166 | Rat | n/a | region | qtl |
| 1000 | 2303178 | Bp334 | Blood pressure QTL 334 | 3.7 | 0.01 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 79271511 | 91616855 | Rat | n/a | region | qtl |
| 1000 | 2303178 | Bp334 | Blood pressure QTL 334 | 3.7 | 0.01 | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 9 | 79271511 | 91616855 | Rat | n/a | region | qtl |
| 1000 | 2303178 | Bp334 | Blood pressure QTL 334 | 3.7 | 0.01 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 79271511 | 91616855 | Rat | n/a | region | qtl |
| 1000 | 61352 | Bp34 | Blood pressure QTL 34 | 5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 42495343 | 79271511 | Rat | n/a | region | qtl |
| 1000 | 6903937 | Bp356 | Blood pressure QTL 356 | | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 47902208 | 52283252 | Rat | n/a | region | qtl |
| 1000 | 11353947 | Bp392 | Blood pressure QTL 392 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 7283252 | 52283252 | Rat | n/a | region | qtl |
| 1000 | 11353949 | Bp393 | Blood pressure QTL 393 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 40194188 | 85194188 | Rat | n/a | region | qtl |
| 1000 | 11353951 | Bp394 | Blood pressure QTL 394 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 44649921 | 89649921 | Rat | n/a | region | qtl |
| 1000 | 4889943 | Bss90 | Bone structure and strength QTL 90 | 4.1 | | tibia area (VT:1000281) | tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722) | 9 | 86369631 | 92058970 | Rat | n/a | region | qtl |
| 1000 | 1354626 | Bvd1 | Brain ventricular dilatation QTL 1 | 3.73 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 9 | 75712843 | 111552878 | Rat | n/a | region | qtl |
| 1000 | 7411571 | Bw138 | Body weight QTL 138 | 14.3 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 9 | 32535505 | 77535505 | Rat | n/a | region | qtl |
| 1000 | 1300180 | Bw14 | Body weight QTL 14 | 3.776 | | body mass (VT:0001259) | body weight (CMO:0000012) | 9 | 23754024 | 61381613 | Rat | n/a | region | qtl |
| 1000 | 631211 | Bw4 | Body weight QTL4 | 5.31 | | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 9 | 5109826 | 50109826 | Rat | n/a | region | qtl |
| 1000 | 1331757 | Cdexp1 | CD45RC expression in CD8 T cells QTL 1 | 4.3 | | CD8-positive T cell quantity (VT:0008077) | blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990) | 9 | 1024537 | 67509080 | Rat | n/a | region | qtl |
| 1000 | 61425 | Cia15 | Collagen induced arthritis QTL 15 | 4.6 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 9 | 5109826 | 42921101 | Rat | n/a | region | qtl |
| 1000 | 631680 | Cm11 | Cardiac mass QTL 11 | 3.1 | 0.00089 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 9 | 20430519 | 65430519 | Rat | n/a | region | qtl |
| 1000 | 724543 | Cm20 | Cardiac mass QTL 20 | 3.9 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 9 | 16961398 | 40594091 | Rat | n/a | region | qtl |
| 1000 | 724547 | Cm21 | Cardiac mass QTL 21 | 2.7 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 9 | 79271511 | 102910209 | Rat | n/a | region | qtl |
| 1000 | 70218 | Cm28 | Cardiac mass QTL 28 | 8.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 9 | 25268044 | 79271759 | Rat | n/a | region | qtl |
| 1000 | 1300124 | Cm4 | Cardiac mass QTL 4 | 3.55 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 9 | 1 | 40594091 | Rat | n/a | region | qtl |
| 1000 | 1578760 | Cm53 | Cardiac mass QTL 53 | 3.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 9 | 56771635 | 101771635 | Rat | n/a | region | qtl |
| 1000 | 1354650 | Despr5 | Despair related QTL 5 | 4.01 | 0.0017 | locomotor behavior trait (VT:0001392) | amount of time spent in voluntary immobility (CMO:0001043) | 9 | 1254084 | 46254084 | Rat | n/a | region | qtl |
| 1000 | 1298088 | Edpm11 | Estrogen-dependent pituitary mass QTL 11 | 2.5 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 9 | 1 | 43718459 | Rat | n/a | region | qtl |
| 1000 | 61385 | Edpm9 | Estrogen-dependent pituitary mass QTL 9 | 3.43 | 0.05 | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 9 | 63869687 | 108869687 | Rat | n/a | region | qtl |
| 1000 | 7411609 | Foco16 | Food consumption QTL 16 | 25.6 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 9 | 8952560 | 53952560 | Rat | n/a | region | qtl |
| 1000 | 7411656 | Foco26 | Food consumption QTL 26 | 9.8 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 9 | 32535505 | 77535505 | Rat | n/a | region | qtl |
| 1000 | 7411592 | Foco8 | Food consumption QTL 8 | 7.4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 9 | 1 | 37999212 | Rat | n/a | region | qtl |
| 1000 | 731171 | Glom6 | Glomerulus QTL 6 | 2.8 | 0.0003 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 9 | 64573531 | 109573531 | Rat | n/a | region | qtl |
| 1000 | 2303559 | Gluco54 | Glucose level QTL 54 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 9 | 1254084 | 46254084 | Rat | n/a | region | qtl |
| 1000 | 9589158 | Gluco65 | Glucose level QTL 65 | 6.82 | 0.001 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 9 | 1 | 37999212 | Rat | n/a | region | qtl |
| 1000 | 10058949 | Gmadr5 | Adrenal mass QTL 5 | 2 | 0.014 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight to body weight ratio (CMO:0002411) | 9 | 42791513 | 87976209 | Rat | n/a | region | qtl |
| 1000 | 9589133 | Insul26 | Insulin level QTL 26 | 17.96 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 9 | 8952560 | 53952560 | Rat | n/a | region | qtl |
| 1000 | 1600365 | Mcs20 | Mammary carcinoma susceptibility QTL 20 | 3 | | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 9 | 13533770 | 42791750 | Rat | n/a | region | qtl |
| 1000 | 7794784 | Mcs31 | Mammary carcinoma susceptibility QTL 31 | 2.98 | | mammary gland integrity trait (VT:0010552) | mammary tumor incidence/prevalence measurement (CMO:0000946) | 9 | 77813894 | 111552878 | Rat | n/a | region | qtl |
| 1000 | 1598834 | Memor11 | Memory QTL 11 | 2.5 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 9 | 36962359 | 77814038 | Rat | n/a | region | qtl |
| 1000 | 1598823 | Memor16 | Memory QTL 16 | 1.9 | | exploratory behavior trait (VT:0010471) | difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678) | 9 | 22133322 | 49968732 | Rat | n/a | region | qtl |
| 1000 | 1598849 | Memor17 | Memory QTL 17 | 2.2 | | exploratory behavior trait (VT:0010471) | difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678) | 9 | 49968546 | 71098346 | Rat | n/a | region | qtl |
| 1000 | 70186 | Niddm26 | Non-insulin dependent diabetes mellitus QTL 26 | 3.87 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 9 | 22071169 | 86369743 | Rat | n/a | region | qtl |
| 1000 | 4889852 | Pur26 | Proteinuria QTL 26 | 15 | 0.001 | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 9 | 77813894 | 101597663 | Rat | n/a | region | qtl |
| 1000 | 6903941 | Pur31 | Proteinuria QTL 31 | | 0.036 | urine total protein amount (VT:0000032) | urine protein excretion rate (CMO:0000759) | 9 | 40194188 | 85194188 | Rat | n/a | region | qtl |
| 1000 | 12879506 | Pur33 | Proteinuria QTL 33 | | | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 9 | 44649921 | 89649921 | Rat | n/a | region | qtl |
| 1000 | 1578757 | Pur6 | Proteinuria QTL 6 | 3.3 | 0.005 | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 9 | 62072275 | 96470995 | Rat | n/a | region | qtl |
| 1000 | 9589055 | Scfw5 | Subcutaneous fat weight QTL 5 | 5.55 | 0.001 | subcutaneous adipose mass (VT:1000472) | abdominal subcutaneous fat pad weight (CMO:0002069) | 9 | 1 | 37999212 | Rat | n/a | region | qtl |
| 1000 | 2290450 | Scl57 | Serum cholesterol level QTL 57 | 4.15 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 9 | 36962359 | 95410867 | Rat | n/a | region | qtl |
| 1000 | 10054125 | Srcrt7 | Stress Responsive Cort QTL 7 | 3.33 | 0.0011 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 9 | 1 | 87073594 | Rat | n/a | region | qtl |
| 1000 | 1578659 | Tspe1 | Trichinella spiralis expulsion QTL 1 | 4.8 | | parasite quantity (VT:0010441) | logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024) | 9 | 61381434 | 65691299 | Rat | n/a | region | qtl |
| 1000 | 724515 | Uae16 | Urinary albumin excretion QTL 16 | 8 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 58163035 | 100929646 | Rat | n/a | region | qtl |
| 1000 | 731164 | Uae25 | Urinary albumin excretion QTL 25 | 3.5 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 25661188 | 100929786 | Rat | n/a | region | qtl |
| 1000 | 1581580 | Uae34 | Urinary albumin excretion QTL 34 | | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 62072275 | 96470995 | Rat | n/a | region | qtl |
| 1000 | 724544 | Uae9 | Urinary albumin excretion QTL 9 | 4.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 9 | 25268044 | 114175309 | Rat | n/a | region | qtl |
| 1000 | 8662828 | Vetf6 | Vascular elastic tissue fragility QTL 6 | 3.9 | | artery integrity trait (VT:0010639) | patent ductus arteriosus score (CMO:0002566) | 9 | 36962359 | 92058970 | Rat | n/a | region | qtl |