| 1000 | 1301087 | Bbaa15_m | B.burgdorferi-associated arthritis 15 (mouse) | | | Not determined | | 2 | 110489658 | 144489807 | Mouse | n/a | region | qtl |
| 1000 | 11353826 | Bdln10_m | body length 10 (mouse) | | | | | 2 | 140441482 | 174441482 | Mouse | n/a | region | qtl |
| 1000 | 1301031 | Bdln3_m | body length 3 (mouse) | | | Not determined | | 2 | 127664019 | 161664118 | Mouse | n/a | region | qtl |
| 1000 | 1301618 | Bglu1_m | blood glucose level 1 (mouse) | | | Not determined | | 2 | 117942930 | 174324863 | Mouse | n/a | region | qtl |
| 1000 | 1301783 | Bhr1_m | bronchial hyperresponsiveness 1 (mouse) | | | Not determined | | 2 | 142593476 | 178442452 | Mouse | n/a | region | qtl |
| 1000 | 1357484 | Bsbob_m | BSB obesity (mouse) | | | Not determined | | 2 | 143773445 | 165665019 | Mouse | n/a | region | qtl |
| 1000 | 1301961 | Bts1_m | bladder tumor susceptibility 1 (mouse) | | | Not determined | | 2 | 132024159 | 166024330 | Mouse | n/a | region | qtl |
| 1000 | 1302143 | Bwq5_m | body weight (mouse) | | | Not determined | | 2 | 127664019 | 161664118 | Mouse | n/a | region | qtl |
| 1000 | 10054066 | Bwq9_m | body weight QTL 9 (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 1301201 | Chab1_m | cholesterol absorption 1 (mouse) | | | Not determined | | 2 | 111551028 | 145551163 | Mouse | n/a | region | qtl |
| 1000 | 4141703 | Chlq13_m | circulating hormone level QTL 13 (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 10045885 | Cplaq15_m | circadian period of locomotor activity 15 (mouse) | | | Not determined | | 2 | 110916118 | 154354667 | Mouse | n/a | region | qtl |
| 1000 | 1302174 | Dssc2_m | dextran sodium sulfate induced colitis QTL2 (mouse) | | | Not determined | | 2 | 24224632 | 148700377 | Mouse | n/a | region | qtl |
| 1000 | 27226749 | Femd10_m | femur midshaft diameter 10, 16 week (mouse) | | | | | 2 | 124441920 | 168241920 | Mouse | n/a | region | qtl |
| 1000 | 27226788 | Feml13_m | femur length 13, 10 week (mouse) | | | | | 2 | 102630345 | 159941920 | Mouse | n/a | region | qtl |
| 1000 | 27226761 | Feml18_m | femur length 18, 16 week (mouse) | | | | | 2 | 94230345 | 154241920 | Mouse | n/a | region | qtl |
| 1000 | 1558939 | Gnf1_m | growth and fatness 1 (mouse) | | | Not determined | | 2 | 143773445 | 169117924 | Mouse | n/a | region | qtl |
| 1000 | 10043956 | Gnf5_m | growth and fatness 5 (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 1301755 | Hrq1_m | heart rate quantitative locus 1 (mouse) | | | Not determined | | 2 | 111173704 | 145173821 | Mouse | n/a | region | qtl |
| 1000 | 1301294 | Hrtfm5_m | heart failure modifier 5 (mouse) | | | Not determined | | 2 | 122883015 | 156883131 | Mouse | n/a | region | qtl |
| 1000 | 10412082 | Hylaq1_m | Hyperlocomotor activity related QTL 1 (mouse) | | | Not determined | | 2 | 84013198 | 148667470 | Mouse | n/a | region | qtl |
| 1000 | 12801461 | Intim1_m | intima modifier 1 (mouse) | | | | | 2 | 142428347 | 176428450 | Mouse | n/a | region | qtl |
| 1000 | 12801456 | Intmrm1_m | intima/media ratio modifier 1 (mouse) | | | | | 2 | 142428347 | 176428450 | Mouse | n/a | region | qtl |
| 1000 | 1301905 | Lgth2_m | body length 2 (mouse) | | | Not determined | | 2 | 111173704 | 145173821 | Mouse | n/a | region | qtl |
| 1000 | 1301344 | Lith1_m | lithogenic gene 1 (mouse) | | | Not determined | | 2 | 45347635 | 145312647 | Mouse | n/a | region | qtl |
| 1000 | 11049566 | Lmr28e_m | leishmaniasis resistance 28e (mouse) | | | | | 2 | 133144911 | 167145058 | Mouse | n/a | region | qtl |
| 1000 | 11049567 | Lmr28f_m | leishmaniasis resistance 28f (mouse) | | | | | 2 | 133144911 | 167145058 | Mouse | n/a | region | qtl |
| 1000 | 11038702 | Ltpr2_m | Leishmania tropica response 2 (mouse) | | | | | 2 | 103095716 | 167212356 | Mouse | n/a | region | qtl |
| 1000 | 11038700 | Ltpr2a_m | Leishmania tropica response 2a (mouse) | | | | | 2 | 112212746 | 146213005 | Mouse | n/a | region | qtl |
| 1000 | 11038699 | Ltpr2b_m | Leishmania tropica response 2b (mouse) | | | | | 2 | 112212746 | 146213005 | Mouse | n/a | region | qtl |
| 1000 | 11038696 | Ltpr2f_m | Leishmania tropica response 2f (mouse) | | | | | 2 | 115212857 | 149212994 | Mouse | n/a | region | qtl |
| 1000 | 11039521 | Ltpr2g_m | Leishmania tropica response 2g (mouse) | | | | | 2 | 115212857 | 149212994 | Mouse | n/a | region | qtl |
| 1000 | 11039520 | Ltpr2h_m | Leishmania tropica response 2h (mouse) | | | | | 2 | 112212746 | 146213005 | Mouse | n/a | region | qtl |
| 1000 | 5491197 | Mobq5_m | multigenic obesity QTL 5 (mouse) | | | Not determined | | 2 | 65269746 | 162518926 | Mouse | n/a | region | qtl |
| 1000 | 5491196 | Mobq6_m | multigenic obesity QTL 6 (mouse) | | | Not determined | | 2 | 85724269 | 180896594 | Mouse | n/a | region | qtl |
| 1000 | 1300647 | Nktcn2_m | natural killer T cell numbers 2 (mouse) | | | Not determined | | 2 | 138737416 | 145893953 | Mouse | n/a | region | qtl |
| 1000 | 1302033 | Nsv1_m | Neuroadapted Sindbis viral RNA level 1 (mouse) | | | Not determined | | 2 | 111623386 | 145623526 | Mouse | n/a | region | qtl |
| 1000 | 1301066 | Otx2m2_m | orthodenticle homolog 2 (Drosophila) modifier 2 (mouse) | | | Not determined | | 2 | 123231973 | 148700377 | Mouse | n/a | region | qtl |
| 1000 | 1300846 | Pbwg11_m | postnatal body weight growth 11 (mouse) | | | Not determined | | 2 | 138966600 | 172966729 | Mouse | n/a | region | qtl |
| 1000 | 1300793 | Pcfm2_m | periosteal circumference and femur length 2 (mouse) | | | Not determined | | 2 | 111173704 | 145173821 | Mouse | n/a | region | qtl |
| 1000 | 1301822 | Pgia2_m | proteoglycan induced arthritis 2 (mouse) | | | Not determined | | 2 | 123937311 | 157937424 | Mouse | n/a | region | qtl |
| 1000 | 4141155 | Plast2b_m | plasma plant sterol 2b (mouse) | | | Not determined | | 2 | 84013198 | 148522175 | Mouse | n/a | region | qtl |
| 1000 | 1301295 | Prdt1_m | prion disease incubation time 1 (mouse) | | | Not determined | | 2 | 116077623 | 150077741 | Mouse | n/a | region | qtl |
| 1000 | 12910814 | Pwbwq1_m | pre-weaning body weight QTL 1 (mouse) | | | | | 2 | 118589253 | 160611165 | Mouse | n/a | region | qtl |
| 1000 | 12910795 | Pwbwq5_m | post-weaning body weight QTL 5 (mouse) | | | | | 2 | 118589253 | 160611165 | Mouse | n/a | region | qtl |
| 1000 | 12910812 | Pwgrq1_m | pre-weaning growth rate QTL 1 (mouse) | | | | | 2 | 118589253 | 160611165 | Mouse | n/a | region | qtl |
| 1000 | 12910799 | Pwgrq2_m | pre-weaning growth rate QTL 2 (mouse) | | | | | 2 | 118589253 | 160611165 | Mouse | n/a | region | qtl |
| 1000 | 1301907 | Rends_m | renal disease susceptibility (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 11341717 | Rvfs1_m | Rift Valley fever susceptibility 1 (mouse) | | | | | 2 | 135432544 | 173449616 | Mouse | n/a | region | qtl |
| 1000 | 1558881 | Ses7_m | salmonella enteritidis susceptibility 7 (mouse) | | | Not determined | | 2 | 116306330 | 150306474 | Mouse | n/a | region | qtl |
| 1000 | 1558990 | Skmw9_m | skeletal muscle weight 9 (mouse) | | | Not determined | | 2 | 111173704 | 145173821 | Mouse | n/a | region | qtl |
| 1000 | 4141281 | Ssrq1_m | stress response QTL 1 (mouse) | | | Not determined | | | 142059301 | 145893953 | Mouse | n/a | region | qtl |
| 1000 | 4141854 | T2dm2sa_m | type 2 diabetes mellitus 2 in SMXA RI mice (mouse) | | | Not determined | | 2 | 29307947 | 148374934 | Mouse | n/a | region | qtl |
| 1000 | 12880427 | V25Dq3_m | vitamin D inactive form serum level QTL 3 (mouse) | | | | | 2 | 129341920 | 163341920 | Mouse | n/a | region | qtl |
| 1000 | 4141033 | Wg2d_m | weight gain in high growth mice 2d (mouse) | | | Not determined | | | 143773445 | 160303008 | Mouse | n/a | region | qtl |