| 1000 | 1301370 | Adip1_m | adiposity 1 (mouse) | | | Not determined | | 1 | 2882194 | 36882352 | Mouse | n/a | region | qtl |
| 1000 | 1301891 | Alcp25_m | alcohol preference locus 25 (mouse) | | | Not determined | | 1 | 1 | 25203185 | Mouse | n/a | region | qtl |
| 1000 | 11039528 | Ccc3_m | colitis susceptibility in the Collaborative Cross 3 (mouse) | | | | | 1 | 3680142 | 195051546 | Mouse | n/a | region | qtl |
| 1000 | 1300834 | Cia20_m | collagen induced arthritis 20 (mouse) | | | Not determined | | 1 | 1 | 25203185 | Mouse | n/a | region | qtl |
| 1000 | 14700685 | Civq2_m | cerebral infarct volume QTL 2 (mouse) | | | | | 1 | 11340482 | 45340482 | Mouse | n/a | region | qtl |
| 1000 | 1301011 | Cplaq4_m | circadian period of locomotor activity 4 (mouse) | | | Not determined | | 1 | 9673442 | 43673601 | Mouse | n/a | region | qtl |
| 1000 | 4141646 | Fecq3_m | fecundity QTL 3 (mouse) | | | Not determined | | 1 | 12916920 | 26517685 | Mouse | n/a | region | qtl |
| 1000 | 15092055 | Lgrme1_m | late growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 1301482 | Morph1_m | morphine antinociception 1 (mouse) | | | Not determined | | 1 | 1 | 30367747 | Mouse | n/a | region | qtl |
| 1000 | 10043970 | Obq23_m | obesity QTL 23 (mouse) | | | Not determined | | 1 | 5012665 | 39012665 | Mouse | n/a | region | qtl |
| 1000 | 1301471 | Obq2_m | obesity QTL 2 (mouse) | | | Not determined | | 1 | 3941620 | 37941887 | Mouse | n/a | region | qtl |
| 1000 | 1301073 | Orch5_m | autoimmune orchitis resistance 5 (mouse) | | | Not determined | | 1 | 19065351 | 53065454 | Mouse | n/a | region | qtl |
| 1000 | 1301756 | Pgia1_m | proteoglycan induced arthritis 1 (mouse) | | | Not determined | | 1 | 19065351 | 53065454 | Mouse | n/a | region | qtl |
| 1000 | 1301275 | Sle10_m | systematic lupus erythematosus susceptibility 10 (mouse) | | | Not determined | | 1 | 2882194 | 36882352 | Mouse | n/a | region | qtl |
| 1000 | 1301240 | Sluc15_m | susceptibility to lung cancer 15 (mouse) | | | Not determined | | 1 | 19065351 | 53065454 | Mouse | n/a | region | qtl |
| 1000 | 13824984 | Twq5_m | testis weight QTL 5 (mouse) | | | | | 1 | 3069992 | 184732197 | Mouse | n/a | region | qtl |
| 1000 | 12880407 | V125Dq2_m | vitamin D active form serum level QTL 2 (mouse) | | | | | 1 | 19339081 | 53339081 | Mouse | n/a | region | qtl |
| 1000 | 1357475 | w3q13_m | weight 3 weeks QTL 13 (mouse) | | | Not determined | | 1 | 23109591 | 73976915 | Mouse | n/a | region | qtl |
| 1000 | 15092051 | Wegrme1_m | week eight growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 15092046 | Wngrme1_m | week nine growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 15092050 | Wsegrme1_m | week seven growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 15092048 | Wsigrme1_m | week six growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 15092044 | Wtgrme1_m | week ten growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |