| 1000 | 738023 | Alc17 | Alcohol consumption QTL 17 | 3.1 | 0.003 | consumption behavior trait (VT:0002069) | ethanol drink intake rate to body weight ratio (CMO:0001616) | 6 | 1 | 35623029 | Rat | n/a | region | qtl |
| 1000 | 1578668 | Bmd14 | Bone mineral density QTL 14 | 3.8 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 6 | 6161722 | 76002731 | Rat | n/a | region | qtl |
| 1000 | 2300176 | Bmd51 | Bone mineral density QTL 51 | 11.7 | 0.0001 | femur mineral mass (VT:0010011) | bone mineral density (CMO:0001226) | 6 | 1 | 35623029 | Rat | n/a | region | qtl |
| 1000 | 2300190 | Bmd52 | Bone mineral density QTL 52 | 11.2 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 6 | 1 | 35623029 | Rat | n/a | region | qtl |
| 1000 | 7207814 | Bmd91 | Bone mineral density QTL 91 | 3.5 | | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 9 | 27486155 | 88333183 | Rat | n/a | region | qtl |
| 1000 | 631656 | Bp108 | Blood pressure QTL 108 | 5.97 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 54177542 | 99177542 | Rat | n/a | region | qtl |
| 1000 | 1300134 | Bp185 | Blood pressure QTL 185 | 3.73 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 66757444 | 112943287 | Rat | n/a | region | qtl |
| 1000 | 1359023 | Bp272 | Blood pressure QTL 272 | 2.5 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 1120393 | 28706721 | Rat | n/a | region | qtl |
| 1000 | 2301972 | Bp325 | Blood pressure QTL 325 | 4.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 6 | 1 | 75623393 | Rat | n/a | region | qtl |
| 1000 | 2303170 | Bp332 | Blood pressure QTL 332 | 3.73 | 0.027 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 60810298 | 82732466 | Rat | n/a | region | qtl |
| 1000 | 2303180 | Bp333 | Blood pressure QTL 333 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 61730923 | 82890620 | Rat | n/a | region | qtl |
| 1000 | 2303180 | Bp333 | Blood pressure QTL 333 | | 0.001 | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 9 | 61730923 | 82890620 | Rat | n/a | region | qtl |
| 1000 | 2303180 | Bp333 | Blood pressure QTL 333 | | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 61730923 | 82890620 | Rat | n/a | region | qtl |
| 1000 | 61352 | Bp34 | Blood pressure QTL 34 | 5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 46952427 | 83686153 | Rat | n/a | region | qtl |
| 1000 | 11353949 | Bp393 | Blood pressure QTL 393 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 46579769 | 91579769 | Rat | n/a | region | qtl |
| 1000 | 1578665 | Bss16 | Bone structure and strength QTL 16 | 4.4 | | femur morphology trait (VT:0000559) | bone trabecular cross-sectional area (CMO:0002311) | 6 | 6161722 | 76002731 | Rat | n/a | region | qtl |
| 1000 | 2293709 | Bss23 | Bone structure and strength QTL 23 | 5.18 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 6 | 1 | 43665660 | Rat | n/a | region | qtl |
| 1000 | 2293656 | Bss28 | Bone structure and strength QTL 28 | 6.79 | 0.0001 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 6 | 1 | 43665660 | Rat | n/a | region | qtl |
| 1000 | 2293650 | Bss31 | Bone structure and strength QTL 31 | 5.05 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 6 | 1 | 43665660 | Rat | n/a | region | qtl |
| 1000 | 634322 | Bw12 | Body weight QTL 12 | 0 | | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 10173862 | 55173862 | Rat | n/a | region | qtl |
| 1000 | 7411542 | Bw127 | Body weight QTL 127 | 5.5 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 6 | 1 | 42388212 | Rat | n/a | region | qtl |
| 1000 | 7411571 | Bw138 | Body weight QTL 138 | 14.3 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 9 | 37642351 | 82642351 | Rat | n/a | region | qtl |
| 1000 | 70218 | Cm28 | Cardiac mass QTL 28 | 8.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 9 | 29075079 | 83686404 | Rat | n/a | region | qtl |
| 1000 | 1578760 | Cm53 | Cardiac mass QTL 53 | 3.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 9 | 61186278 | 106186278 | Rat | n/a | region | qtl |
| 1000 | 1641898 | Colcr4 | Colorectal carcinoma resistance QTL4 | 3.71 | 0.0007 | intestine integrity trait (VT:0010554) | well differentiated malignant colorectal tumor surface area measurement (CMO:0002077) | 6 | 21515302 | 65784818 | Rat | n/a | region | qtl |
| 1000 | 1354616 | Despr12 | Despair related QTL 12 | | 0.0012 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 6 | 1 | 35623029 | Rat | n/a | region | qtl |
| 1000 | 61385 | Edpm9 | Estrogen-dependent pituitary mass QTL 9 | 3.43 | 0.05 | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 9 | 70241351 | 115241351 | Rat | n/a | region | qtl |
| 1000 | 2292589 | Emca10 | Estrogen-induced mammary cancer QTL 10 | | 0.048 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 6 | 1120393 | 46120393 | Rat | n/a | region | qtl |
| 1000 | 1576309 | Emca7 | Estrogen-induced mammary cancer QTL 7 | 4 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 6 | 2537030 | 111715717 | Rat | n/a | region | qtl |
| 1000 | 7411603 | Foco13 | Food consumption QTL 13 | 5.5 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 6 | 1 | 42388212 | Rat | n/a | region | qtl |
| 1000 | 7411656 | Foco26 | Food consumption QTL 26 | 9.8 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 9 | 37642351 | 82642351 | Rat | n/a | region | qtl |
| 1000 | 7411584 | Foco4 | Food consumption QTL 4 | 4.3 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 6 | 1 | 44015370 | Rat | n/a | region | qtl |
| 1000 | 731171 | Glom6 | Glomerulus QTL 6 | 2.8 | 0.0003 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 9 | 70942881 | 115942881 | Rat | n/a | region | qtl |
| 1000 | 10058949 | Gmadr5 | Adrenal mass QTL 5 | 2 | 0.014 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight to body weight ratio (CMO:0002411) | 9 | 47248965 | 94124663 | Rat | n/a | region | qtl |
| 1000 | 9589129 | Insul24 | Insulin level QTL 24 | 19.06 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 6 | 1 | 42388212 | Rat | n/a | region | qtl |
| 1000 | 2293839 | Kiddil2 | Kidney dilation QTL 2 | 4.8 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 22042854 | 84763421 | Rat | n/a | region | qtl |
| 1000 | 2293841 | Kiddil4 | Kidney dilation QTL 4 | 4.4 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 22042854 | 84763421 | Rat | n/a | region | qtl |
| 1000 | 10401800 | Kidm49 | Kidney mass QTL 49 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 6 | 16810107 | 61810107 | Rat | n/a | region | qtl |
| 1000 | 10401812 | Kidm54 | Kidney mass QTL 54 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 6 | 16810107 | 61810107 | Rat | n/a | region | qtl |
| 1000 | 4145119 | Mcs25 | Mammary carcinoma susceptibility QTL 25 | | 0.0001 | mammary gland integrity trait (VT:0010552) | ratio of deaths to total study population during a period of time (CMO:0001023) | 6 | 7009971 | 115379601 | Rat | n/a | region | qtl |
| 1000 | 1598834 | Memor11 | Memory QTL 11 | 2.5 | | exploratory behavior trait (VT:0010471) | average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 9 | 41261034 | 90024806 | Rat | n/a | region | qtl |
| 1000 | 70186 | Niddm26 | Non-insulin dependent diabetes mellitus QTL 26 | 3.87 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 9 | 25692342 | 92741406 | Rat | n/a | region | qtl |
| 1000 | 8552962 | Pigfal16 | Plasma insulin-like growth factor 1 level QTL 16 | 9.4 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 6 | 1 | 42388212 | Rat | n/a | region | qtl |
| 1000 | 8552910 | Pigfal5 | Plasma insulin-like growth factor 1 level QTL 5 | 4.3 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 6 | 19417887 | 64417887 | Rat | n/a | region | qtl |
| 1000 | 6903941 | Pur31 | Proteinuria QTL 31 | | 0.036 | total urine protein amount (VT:0000032) | urine protein excretion rate (CMO:0000759) | 9 | 46579769 | 91579769 | Rat | n/a | region | qtl |
| 1000 | 1578757 | Pur6 | Proteinuria QTL 6 | 3.3 | 0.005 | total urine protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 9 | 67451664 | 99920892 | Rat | n/a | region | qtl |
| 1000 | 1300164 | Rf15 | Renal function QTL 15 | 3.12 | | renal blood flow trait (VT:2000006) | absolute change in renal blood flow rate (CMO:0001168) | 6 | 13122958 | 57516539 | Rat | n/a | region | qtl |
| 1000 | 1300128 | Rf16 | Renal function QTL 16 | 3.89 | | renal blood flow trait (VT:2000006) | absolute change in renal blood flow rate (CMO:0001168) | 6 | 13122958 | 34367603 | Rat | n/a | region | qtl |
| 1000 | 738024 | Sach5 | Saccharine consumption QTL 5 | 3.9 | 0.00039 | consumption behavior trait (VT:0002069) | saccharin intake volume to total fluid intake volume ratio (CMO:0001601) | 6 | 1 | 44570292 | Rat | n/a | region | qtl |
| 1000 | 9589048 | Scfw3 | Subcutaneous fat weight QTL 3 | 4.57 | 0.001 | subcutaneous adipose mass (VT:1000472) | abdominal subcutaneous fat pad weight (CMO:0002069) | 6 | 1 | 42388212 | Rat | n/a | region | qtl |
| 1000 | 2290450 | Scl57 | Serum cholesterol level QTL 57 | 4.15 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 9 | 41261034 | 102531865 | Rat | n/a | region | qtl |
| 1000 | 1354664 | Slep2 | Serum leptin concentration QTL 2 | 4.49 | | blood leptin amount (VT:0005667) | serum leptin level (CMO:0000780) | 6 | 1120393 | 75023446 | Rat | n/a | region | qtl |
| 1000 | 10054125 | Srcrt7 | Stress Responsive Cort QTL 7 | 3.33 | 0.0011 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 9 | 1055222 | 93442944 | Rat | n/a | region | qtl |
| 1000 | 1549905 | Stresp10 | Stress response QTL 10 | 6.83 | 0.0066 | stress-related behavior trait (VT:0010451) | number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960) | 6 | 1 | 35623029 | Rat | n/a | region | qtl |
| 1000 | 724515 | Uae16 | Urinary albumin excretion QTL 16 | 8 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 63270073 | 107878387 | Rat | n/a | region | qtl |
| 1000 | 731164 | Uae25 | Urinary albumin excretion QTL 25 | 3.5 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 29466970 | 107878528 | Rat | n/a | region | qtl |
| 1000 | 1331743 | Uae28 | Urinary albumin excretion QTL 28 | 4.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 6 | 1 | 41917988 | Rat | n/a | region | qtl |
| 1000 | 1581580 | Uae34 | Urinary albumin excretion QTL 34 | | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 67451664 | 99920892 | Rat | n/a | region | qtl |
| 1000 | 724544 | Uae9 | Urinary albumin excretion QTL 9 | 4.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 9 | 29075079 | 122095297 | Rat | n/a | region | qtl |
| 1000 | 8662828 | Vetf6 | Vascular elastic tissue fragility QTL 6 | 3.9 | | artery integrity trait (VT:0010639) | patent ductus arteriosus score (CMO:0002566) | 9 | 41261034 | 98606834 | Rat | n/a | region | qtl |