| 1000 | 8694196 | Abfw2 | Abdominal fat weight QTL 2 | 16.58 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 3 | 28249687 | 73249687 | Rat | n/a | region | qtl |
| 1000 | 61476 | Aia3 | Adjuvant induced arthritis QTL 3 | 3.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 4 | 86730991 | 131730991 | Rat | n/a | region | qtl |
| 1000 | 738031 | Alc14 | Alcohol consumption QTL 14 | 7.6 | 0.00003 | consumption behavior trait (VT:0002069) | ethanol drink intake rate to body weight ratio (CMO:0001616) | 4 | 59948935 | 154902892 | Rat | n/a | region | qtl |
| 1000 | 738016 | Alc16 | Alcohol consumption QTL 16 | 3.6 | 0.00015 | consumption behavior trait (VT:0002069) | ethanol drink intake rate to body weight ratio (CMO:0001616) | 4 | 59948935 | 154902892 | Rat | n/a | region | qtl |
| 1000 | 70200 | Alc18 | Alcohol consumption QTL 18 | 9.2 | | drinking behavior trait (VT:0001422) | ethanol intake volume to total fluid intake volume ratio (CMO:0001591) | 4 | 56647873 | 149491524 | Rat | n/a | region | qtl |
| 1000 | 1641833 | Alc21 | Alcohol consumption QTL 21 | 8.6 | 0.0001 | drinking behavior trait (VT:0001422) | ethanol drink intake rate (CMO:0001407) | 4 | 56698790 | 126192555 | Rat | n/a | region | qtl |
| 1000 | 1641919 | Alc22 | Alcohol consumption QTL 22 | | 0.0005 | drinking behavior trait (VT:0001422) | ethanol drink intake rate (CMO:0001407) | 4 | 81192555 | 126192555 | Rat | n/a | region | qtl |
| 1000 | 12879853 | Am5 | Aortic mass QTL 5 | | 0.001 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 3 | 18311454 | 47233430 | Rat | n/a | region | qtl |
| 1000 | 12879868 | Am6 | Aortic mass QTL 6 | | 0.001 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 3 | 31426403 | 70668733 | Rat | n/a | region | qtl |
| 1000 | 634335 | Anxrr16 | Anxiety related response QTL 16 | 7.22 | | locomotor behavior trait (VT:0001392) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 4 | 93308457 | 167139447 | Rat | n/a | region | qtl |
| 1000 | 6478684 | Anxrr30 | Anxiety related response QTL 30 | | 0.00087 | defecation behavior trait (VT:0010462) | defecation rate (CMO:0000998) | 4 | 62753847 | 107753847 | Rat | n/a | region | qtl |
| 1000 | 6478743 | Anxrr40 | Anxiety related response QTL 40 | | 0.83076 | defecation behavior trait (VT:0010462) | defecation rate (CMO:0000998) | 4 | 62753847 | 107753847 | Rat | n/a | region | qtl |
| 1000 | 6478772 | Anxrr49 | Anxiety related response QTL 49 | | 0.15488 | defecation behavior trait (VT:0010462) | defecation rate (CMO:0000998) | 4 | 62753847 | 107753847 | Rat | n/a | region | qtl |
| 1000 | 12798520 | Anxrr55 | Anxiety related response QTL 55 | 4.45 | 0.01 | locomotor behavior trait (VT:0001392) | number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715) | 4 | 32583980 | 114627242 | Rat | n/a | region | qtl |
| 1000 | 12798523 | Anxrr56 | Anxiety related response QTL 56 | 2.83 | 0.05 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 4 | 85253748 | 150276390 | Rat | n/a | region | qtl |
| 1000 | 1578655 | Bmd11 | Bone mineral density QTL 11 | 11 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 4 | 90850165 | 135850165 | Rat | n/a | region | qtl |
| 1000 | 2300179 | Bmd50 | Bone mineral density QTL 50 | 5.9 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 4 | 60928534 | 105928534 | Rat | n/a | region | qtl |
| 1000 | 2313101 | Bmd76 | Bone mineral density QTL 76 | 3.6 | 0.0001 | tibia mineral mass (VT:1000283) | total volumetric bone mineral density (CMO:0001728) | 3 | 27494621 | 50302886 | Rat | n/a | region | qtl |
| 1000 | 2313093 | Bmd77 | Bone mineral density QTL 77 | 2.2 | 0.0001 | tibia mineral mass (VT:1000283) | compact volumetric bone mineral density (CMO:0001730) | 3 | 27494621 | 50302886 | Rat | n/a | region | qtl |
| 1000 | 631647 | Bp122 | Blood pressure QTL 122 | 6.2 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 3 | 30684642 | 75684642 | Rat | n/a | region | qtl |
| 1000 | 631651 | Bp124 | Blood pressure QTL 124 | 3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 4 | 62879517 | 107879517 | Rat | n/a | region | qtl |
| 1000 | 631556 | Bp135 | Blood pressure QTL 135 | | 0.017 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 4 | 78881294 | 117676292 | Rat | n/a | region | qtl |
| 1000 | 724522 | Bp146 | Blood pressure QTL 146 | 2.2 | 0.0021 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 4 | 73630210 | 118630210 | Rat | n/a | region | qtl |
| 1000 | 731172 | Bp151 | Blood pressure QTL 151 | | 0.04 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 3 | 18311454 | 47233430 | Rat | n/a | region | qtl |
| 1000 | 1300169 | Bp177 | Blood pressure QTL 177 | 2.96 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 3 | 33703347 | 61017857 | Rat | n/a | region | qtl |
| 1000 | 1358885 | Bp251 | Blood pressure QTL 251 | 3.8 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 3 | 14489145 | 121056321 | Rat | n/a | region | qtl |
| 1000 | 1358888 | Bp264 | Blood pressure QTL 264 | 4.43 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 3 | 14489145 | 121056321 | Rat | n/a | region | qtl |
| 1000 | 2303168 | Bp330 | Blood pressure QTL 330 | 4.25 | 0.017 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 4 | 5214602 | 146446691 | Rat | n/a | region | qtl |
| 1000 | 2306899 | Bp338 | Blood pressure QTL 338 | | 0.071 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 4 | 81006124 | 120102625 | Rat | n/a | region | qtl |
| 1000 | 61356 | Bp37 | Blood pressure QTL 37 | 3 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 3 | 30684642 | 75684642 | Rat | n/a | region | qtl |
| 1000 | 631568 | Bp92 | Blood pressure QTL 92 | 2.2 | 0.005 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 3 | 1 | 39874793 | Rat | n/a | region | qtl |
| 1000 | 70191 | BpQTLcluster4 | Blood pressure QTL cluster 4 | 3 | | arterial blood pressure trait (VT:2000000) | absolute change in mean arterial blood pressure (CMO:0000533) | 3 | 10778704 | 50302886 | Rat | n/a | region | qtl |
| 1000 | 70191 | BpQTLcluster4 | Blood pressure QTL cluster 4 | 3 | | arterial blood pressure trait (VT:2000000) | absolute change in systolic blood pressure (CMO:0000607) | 3 | 10778704 | 50302886 | Rat | n/a | region | qtl |
| 1000 | 70192 | BpQTLcluster5 | Blood pressure QTL cluster 5 | 4.183 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 4 | 62933508 | 114921294 | Rat | n/a | region | qtl |
| 1000 | 70192 | BpQTLcluster5 | Blood pressure QTL cluster 5 | 4.183 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 4 | 62933508 | 114921294 | Rat | n/a | region | qtl |
| 1000 | 70192 | BpQTLcluster5 | Blood pressure QTL cluster 5 | 4.183 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 4 | 62933508 | 114921294 | Rat | n/a | region | qtl |
| 1000 | 70192 | BpQTLcluster5 | Blood pressure QTL cluster 5 | 4.183 | | arterial blood pressure trait (VT:2000000) | percent change in mean arterial blood pressure (CMO:0002035) | 4 | 62933508 | 114921294 | Rat | n/a | region | qtl |
| 1000 | 70192 | BpQTLcluster5 | Blood pressure QTL cluster 5 | 4.183 | | arterial blood pressure trait (VT:2000000) | percent change in systolic blood pressure (CMO:0000747) | 4 | 62933508 | 114921294 | Rat | n/a | region | qtl |
| 1000 | 70192 | BpQTLcluster5 | Blood pressure QTL cluster 5 | 4.183 | | arterial blood pressure trait (VT:2000000) | absolute change in pulse pressure (CMO:0001882) | 4 | 62933508 | 114921294 | Rat | n/a | region | qtl |
| 1000 | 70192 | BpQTLcluster5 | Blood pressure QTL cluster 5 | 4.183 | | arterial blood pressure trait (VT:2000000) | absolute change in mean arterial blood pressure (CMO:0000533) | 4 | 62933508 | 114921294 | Rat | n/a | region | qtl |
| 1000 | 1578657 | Bss12 | Bone structure and strength QTL 12 | 8.9 | | femur morphology trait (VT:0000559) | femoral neck cross-sectional area (CMO:0001697) | 4 | 60220938 | 105220938 | Rat | n/a | region | qtl |
| 1000 | 1578658 | Bss13 | Bone structure and strength QTL 13 | 8 | | femur strength trait (VT:0010010) | femoral neck polar moment of inertia (CMO:0001670) | 4 | 60220938 | 105220938 | Rat | n/a | region | qtl |
| 1000 | 1578670 | Bss14 | Bone structure and strength QTL 14 | 16.4 | | femur morphology trait (VT:0000559) | bone trabecular cross-sectional area (CMO:0002311) | 4 | 87327165 | 132327165 | Rat | n/a | region | qtl |
| 1000 | 1578662 | Bss15 | Bone structure and strength QTL 15 | 19.6 | | femur width (VT:1000666) | femoral neck width (CMO:0001695) | 4 | 87327165 | 132327165 | Rat | n/a | region | qtl |
| 1000 | 2313049 | Bss72 | Bone structure and strength QTL 72 | 2.6 | 0.0001 | tibia area (VT:1000281) | tibia midshaft cross-sectional area (CMO:0001717) | 3 | 27494621 | 50302886 | Rat | n/a | region | qtl |
| 1000 | 2313079 | Bss73 | Bone structure and strength QTL 73 | 1.5 | | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 3 | 27494621 | 50302886 | Rat | n/a | region | qtl |
| 1000 | 2313076 | Bss74 | Bone structure and strength QTL 74 | 2 | 0.0001 | tibia strength trait (VT:1000284) | tibia total energy absorbed before break (CMO:0001736) | 3 | 27494621 | 50302886 | Rat | n/a | region | qtl |
| 1000 | 8694386 | Bw159 | Body weight QTL 159 | 4.52 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 3 | 28249687 | 73249687 | Rat | n/a | region | qtl |
| 1000 | 11565451 | Bw177 | Body weight QTL 177 | | 0.002 | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 31426403 | 70668733 | Rat | n/a | region | qtl |
| 1000 | 12879849 | Bw180 | Body weight QTL 180 | | 0.037 | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 18311454 | 47233430 | Rat | n/a | region | qtl |
| 1000 | 70167 | Bw22 | Body weight QTL 22 | 3.1 | | body mass (VT:0001259) | body weight (CMO:0000012) | 4 | 76647384 | 117676292 | Rat | n/a | region | qtl |
| 1000 | 1354589 | Bw31 | Body weight QTL 31 | 3.3 | | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 33703347 | 78196190 | Rat | n/a | region | qtl |
| 1000 | 1354604 | Bw36 | Body weight QTL 36 | 2.9 | | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 33703347 | 104104347 | Rat | n/a | region | qtl |
| 1000 | 1357342 | Bw40 | Body weight QTL 40 | | 0.001 | body mass (VT:0001259) | body weight (CMO:0000012) | 4 | 76647384 | 117676292 | Rat | n/a | region | qtl |
| 1000 | 1549839 | Bw52 | Body weight QTL 52 | | 0.0001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 4 | 61697658 | 115089733 | Rat | n/a | region | qtl |
| 1000 | 1549843 | Bw53 | Body weight QTL 53 | | 0.0001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 4 | 61697658 | 103194791 | Rat | n/a | region | qtl |
| 1000 | 61419 | Cia11 | Collagen induced arthritis QTL 11 | 5.6 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 3 | 30356773 | 98535386 | Rat | n/a | region | qtl |
| 1000 | 1298073 | Cm13 | Cardiac mass QTL 13 | 2.5 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 3 | 25013911 | 38192233 | Rat | n/a | region | qtl |
| 1000 | 70216 | Cm14 | Cardiac mass QTL 14 | 2.1 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 3 | 31172320 | 163586636 | Rat | n/a | region | qtl |
| 1000 | 2301400 | Cm68 | Cardiac mass QTL 68 | | 0.001 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 3 | 31426403 | 70668733 | Rat | n/a | region | qtl |
| 1000 | 631676 | Cm8 | Cardiac mass QTL 8 | 7.03 | 0.0001 | aorta mass (VT:0002845) | aorta weight (CMO:0000076) | 3 | 16954708 | 61954708 | Rat | n/a | region | qtl |
| 1000 | 12879850 | Cm91 | Cardiac mass QTL 91 | | 0.001 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 3 | 18311454 | 47233430 | Rat | n/a | region | qtl |
| 1000 | 12879851 | Cm92 | Cardiac mass QTL 92 | | 0.001 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 3 | 18311454 | 47233430 | Rat | n/a | region | qtl |
| 1000 | 12879852 | Cm93 | Cardiac mass QTL 93 | | 0.001 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 3 | 18311454 | 47233430 | Rat | n/a | region | qtl |
| 1000 | 12879866 | Cm94 | Cardiac mass QTL 94 | | 0.001 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 3 | 31426403 | 70668733 | Rat | n/a | region | qtl |
| 1000 | 12879867 | Cm95 | Cardiac mass QTL 95 | | 0.047 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 3 | 31426403 | 70668733 | Rat | n/a | region | qtl |
| 1000 | 1354590 | Despr11 | Despair related QTL 11 | | 0.000031 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 3 | 28468571 | 73468571 | Rat | n/a | region | qtl |
| 1000 | 2317587 | Eae26 | Experimental allergic encephalomyelitis QTL 26 | | | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 4 | 88656681 | 103194984 | Rat | n/a | region | qtl |
| 1000 | 61330 | Eau1 | Experimental allergic uveoretinitis QTL 1 | | 0.0003 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 4 | 70362013 | 132642728 | Rat | n/a | region | qtl |
| 1000 | 1576305 | Emca6 | Estrogen-induced mammary cancer QTL 6 | 5.8 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 4 | 44463720 | 155883716 | Rat | n/a | region | qtl |
| 1000 | 1576316 | Ept5 | Estrogen-induced pituitary tumorigenesis QTL 5 | 3.8 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 4 | 83428419 | 177635233 | Rat | n/a | region | qtl |
| 1000 | 1354612 | Foco1 | Food consumption QTL 1 | 8.87 | | eating behavior trait (VT:0001431) | food intake rate (CMO:0000427) | 4 | 44463908 | 148090542 | Rat | n/a | region | qtl |
| 1000 | 2312567 | Glom19 | Glomerulus QTL 19 | 1.9 | 0.006 | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 4 | 45456990 | 146803430 | Rat | n/a | region | qtl |
| 1000 | 1358202 | Gluco11 | Glucose level QTL 11 | 2.4 | 0.02 | adipocyte glucose uptake trait (VT:0004185) | absolute change in adipocyte glucose uptake (CMO:0000873) | 4 | 85379421 | 167139601 | Rat | n/a | region | qtl |
| 1000 | 1582232 | Gluco25 | Glucose level QTL 25 | 3.6 | 0.0023 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 4 | 85253748 | 148090731 | Rat | n/a | region | qtl |
| 1000 | 2303593 | Gluco46 | Glucose level QTL 46 | 3 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 3 | 28468571 | 73468571 | Rat | n/a | region | qtl |
| 1000 | 2316958 | Gluco58 | Glucose level QTL 58 | 10 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 4 | 11320076 | 180699135 | Rat | n/a | region | qtl |
| 1000 | 737818 | Hcar12 | Hepatocarcinoma resistance QTL 12 | 2.6 | | liver integrity trait (VT:0010547) | volume of individual liver tumorous lesion (CMO:0001078) | 3 | 29463235 | 118376539 | Rat | n/a | region | qtl |
| 1000 | 631662 | Hcar2 | Hepatocarcinoma resistance QTL 2 | 3.1 | 0.0003 | liver integrity trait (VT:0010547) | volume of individual liver tumorous lesion (CMO:0001078) | 4 | 78878504 | 123878504 | Rat | n/a | region | qtl |
| 1000 | 634344 | Hcar7 | Hepatocarcinoma resistance QTL 7 | 7.8 | | liver integrity trait (VT:0010547) | liver tumorous lesion area to total liver area ratio (CMO:0001075) | 4 | 70808386 | 115808386 | Rat | n/a | region | qtl |
| 1000 | 634344 | Hcar7 | Hepatocarcinoma resistance QTL 7 | 7.8 | | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 4 | 70808386 | 115808386 | Rat | n/a | region | qtl |
| 1000 | 1358905 | Hrtrt17 | Heart rate QTL 17 | 5.9 | 0.000014 | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 3 | 10861912 | 89878372 | Rat | n/a | region | qtl |
| 1000 | 1300139 | Hrtrt6 | Heart rate QTL 6 | 2.85 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 4 | 39524264 | 116179656 | Rat | n/a | region | qtl |
| 1000 | 631674 | Iddm14 | Insulin dependent diabetes mellitus QTL 14 | | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 4 | 64528739 | 157573521 | Rat | n/a | region | qtl |
| 1000 | 61364 | Iddm2 | Insulin dependent diabetes mellitus QTL 2 | | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 4 | 78885890 | 102684881 | Rat | n/a | region | qtl |
| 1000 | 8655961 | Kidm43 | Kidney mass QTL 43 | 18 | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 4 | 36303261 | 103194984 | Rat | n/a | region | qtl |
| 1000 | 10401810 | Kidm53 | Kidney mass QTL 53 | | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 3 | 8227194 | 47233430 | Rat | n/a | region | qtl |
| 1000 | 11565452 | Kidm57 | Kidney mass QTL 57 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 3 | 31426403 | 70668733 | Rat | n/a | region | qtl |
| 1000 | 12879854 | Kidm63 | Kidney mass QTL 63 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 3 | 18311454 | 47233430 | Rat | n/a | region | qtl |
| 1000 | 2298542 | Neuinf11 | Neuroinflammation QTL 11 | 3.9 | | nervous system integrity trait (VT:0010566) | spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126) | 3 | 15005422 | 76927699 | Rat | n/a | region | qtl |
| 1000 | 2302051 | Pia28 | Pristane induced arthritis QTL 28 | 5.3 | 0.001 | blood autoantibody amount (VT:0003725) | serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112) | 4 | 73630210 | 118630210 | Rat | n/a | region | qtl |
| 1000 | 2302055 | Pia30 | Pristane induced arthritis QTL 30 | 3.5 | 0.001 | blood autoantibody amount (VT:0003725) | serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111) | 3 | 27936919 | 72936919 | Rat | n/a | region | qtl |
| 1000 | 61418 | Pia5 | Pristane induced arthritis QTL 5 | 4.5 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 4 | 62277855 | 128289560 | Rat | n/a | region | qtl |
| 1000 | 738015 | Pia9 | Pristane induced arthritis QTL 9 | 4.5 | 0.048 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 4 | 80694870 | 125694870 | Rat | n/a | region | qtl |
| 1000 | 8552950 | Pigfal12 | Plasma insulin-like growth factor 1 level QTL 12 | 7.3 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 3 | 28249687 | 73249687 | Rat | n/a | region | qtl |
| 1000 | 631832 | Sach1 | Saccharin preference QTL 1 | 2.7 | 0.02 | consumption behavior trait (VT:0002069) | calculated saccharin drink intake volume (CMO:0001600) | 3 | 27494621 | 44188411 | Rat | n/a | region | qtl |
| 1000 | 738009 | Sach4 | Saccharine consumption QTL 4 | 4.9 | 0.000016 | consumption behavior trait (VT:0002069) | saccharin intake volume to total fluid intake volume ratio (CMO:0001601) | 4 | 59948935 | 154902892 | Rat | n/a | region | qtl |
| 1000 | 1354660 | Salc1 | Saline consumption QTL 1 | 11.26 | | drinking behavior trait (VT:0001422) | saline drink intake rate (CMO:0001627) | 4 | 44463908 | 148090542 | Rat | n/a | region | qtl |
| 1000 | 631689 | Scl4 | Serum cholesterol level QTL 4 | 1.9 | 0.008 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 4 | 95174120 | 140174120 | Rat | n/a | region | qtl |
| 1000 | 2290452 | Scl56 | Serum cholesterol level QTL 56 | 2.26 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 3 | 1 | 91609953 | Rat | n/a | region | qtl |
| 1000 | 2312664 | Scl62 | Serum cholesterol level QTL 62 | | 0.05 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 3 | 1 | 38710544 | Rat | n/a | region | qtl |
| 1000 | 10450794 | Scl69 | Serum cholesterol level QTL 69 | 6.3 | 0.001 | blood LDL cholesterol amount (VT:0000181) | blood low density lipoprotein cholesterol level (CMO:0000053) | 3 | 20714090 | 65714090 | Rat | n/a | region | qtl |
| 1000 | 10450804 | Scl70 | Serum cholesterol level QTL 70 | 4.7 | 0.001 | blood LDL cholesterol amount (VT:0000181) | blood low density lipoprotein cholesterol level (CMO:0000053) | 3 | 20714090 | 65714090 | Rat | n/a | region | qtl |
| 1000 | 9590136 | Scort3 | Serum corticosterone level QTL 3 | 23.37 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 3 | 28249687 | 73249687 | Rat | n/a | region | qtl |
| 1000 | 1358363 | Sradr3 | Stress Responsive Adrenal Weight QTL 3 | 6.19 | | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 4 | 57486946 | 102486946 | Rat | n/a | region | qtl |
| 1000 | 1358352 | Srcrt3 | Stress Responsive Cort QTL 3 | 2.29 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 4 | 38465774 | 146803430 | Rat | n/a | region | qtl |
| 1000 | 631646 | Stl4 | Serum triglyceride level QTL 4 | 6.5 | 0.0001 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 4 | 73169846 | 132642728 | Rat | n/a | region | qtl |
| 1000 | 1298082 | Stresp4 | Stress response QTL 4 | | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 4 | 50119848 | 146803430 | Rat | n/a | region | qtl |
| 1000 | 9590286 | Uminl1 | Urine mineral level QTL 1 | 3.5 | 0.001 | urine mineral amount (VT:0015086) | urine electrolyte level (CMO:0000593) | 3 | 28249687 | 73249687 | Rat | n/a | region | qtl |
| 1000 | 70177 | Xhs1 | X-ray hypersensitivity QTL 1 | 25.1 | | intestine integrity trait (VT:0010554) | post-insult time to onset of moribundity (CMO:0001896) | 4 | 82798864 | 152731274 | Rat | n/a | region | qtl |
| 1000 | 634334 | Xhs3 | X-ray hypersensitivity QTL 3 | 10 | | intestine integrity trait (VT:0010554) | post-insult time to onset of moribundity (CMO:0001896) | 4 | 84728680 | 129854654 | Rat | n/a | region | qtl |