| 1000 | 8694194 | Abfw1 | Abdominal fat weight QTL 1 | 11.7 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 2 | 184856304 | 229856304 | Rat | n/a | region | qtl |
| 1000 | 2307174 | Activ3 | Activity QTL 3 | 4.83 | 0.000058 | locomotor behavior trait (VT:0001392) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 2 | 210956252 | 251712708 | Rat | n/a | region | qtl |
| 1000 | 738013 | Alc15 | Alcohol consumption QTL 15 | 4.1 | 0.00022 | consumption behavior trait (VT:0002069) | ethanol drink intake rate to body weight ratio (CMO:0001616) | 2 | 186850607 | 231850607 | Rat | n/a | region | qtl |
| 1000 | 8693622 | Alc26 | Alcohol consumption QTL 26 | 2.4 | 0.667 | drinking behavior trait (VT:0001422) | calculated ethanol drink intake rate (CMO:0001615) | 2 | 223810546 | 243965570 | Rat | n/a | region | qtl |
| 1000 | 8693697 | Alc36 | Alcohol consumption QTL 36 | 2 | 0.592 | drinking behavior trait (VT:0001422) | calculated ethanol drink intake rate (CMO:0001615) | 2 | 219814164 | 239320906 | Rat | n/a | region | qtl |
| 1000 | 1641891 | Alcrsp17 | Alcohol response QTL 17 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 2 | 151869660 | 251712708 | Rat | n/a | region | qtl |
| 1000 | 1598835 | Anxrr18 | Anxiety related response QTL 18 | 2.98 | | body movement coordination trait (VT:0005424) | number of rearing movements in an experimental apparatus (CMO:0001752) | 2 | 203664411 | 248664411 | Rat | n/a | region | qtl |
| 1000 | 2313073 | Bmd75 | Bone mineral density QTL 75 | 4.1 | 0.0001 | tibia mineral mass (VT:1000283) | total volumetric bone mineral density (CMO:0001728) | 2 | 218051934 | 251712708 | Rat | n/a | region | qtl |
| 1000 | 631501 | Bp101 | Blood pressure QTL 101 | 2.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 2 | 205135267 | 250135267 | Rat | n/a | region | qtl |
| 1000 | 61467 | Bp14 | Blood pressure QTL 14 | 2.2 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 2 | 205135267 | 250135267 | Rat | n/a | region | qtl |
| 1000 | 1300126 | Bp175 | Blood pressure QTL 175 | 3.46 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 2 | 204795005 | 249795005 | Rat | n/a | region | qtl |
| 1000 | 1331794 | Bp202 | Blood pressure QTL 202 | 3.66819 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 2 | 143344967 | 251712708 | Rat | n/a | region | qtl |
| 1000 | 1331734 | Bp204 | Blood pressure QTL 204 | 3.61192 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 2 | 170656145 | 239614549 | Rat | n/a | region | qtl |
| 1000 | 1354648 | Bp239 | Blood pressure QTL 239 | | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 2 | 67845370 | 229470703 | Rat | n/a | region | qtl |
| 1000 | 1359031 | Bp275 | Blood pressure QTL 275 | | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 2 | 188565047 | 233565047 | Rat | n/a | region | qtl |
| 1000 | 2306901 | Bp337 | Blood pressure QTL 337 | | 0.01 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 2 | 166372086 | 229820014 | Rat | n/a | region | qtl |
| 1000 | 10755499 | Bp389 | Blood pressure QTL 389 | 2.61 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 2 | 20695736 | 231474293 | Rat | n/a | region | qtl |
| 1000 | 61398 | Bp50 | Blood pressure QTL 50 | 4.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 2 | 192287802 | 237287802 | Rat | n/a | region | qtl |
| 1000 | 70175 | BpQTLCluster3 | Blood pressure QTL cluster 3 | 4.128 | | arterial blood pressure trait (VT:2000000) | absolute change in systolic blood pressure (CMO:0000607) | 2 | 205135267 | 250135267 | Rat | n/a | region | qtl |
| 1000 | 7207482 | Bss107 | Bone structure and strength QTL 107 | 7 | | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 2 | 214404877 | 251712708 | Rat | n/a | region | qtl |
| 1000 | 7207484 | Bss108 | Bone structure and strength QTL 108 | 5.3 | | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 2 | 214404877 | 251712708 | Rat | n/a | region | qtl |
| 1000 | 7207490 | Bss111 | Bone structure and strength QTL 111 | 6.4 | | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 2 | 214404877 | 251712708 | Rat | n/a | region | qtl |
| 1000 | 1549836 | Bss2 | Bone structure and strength QTL 2 | 7.5 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 2 | 214404877 | 251712708 | Rat | n/a | region | qtl |
| 1000 | 8694383 | Bw158 | Body weight QTL 158 | 7.69 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 2 | 184856304 | 229856304 | Rat | n/a | region | qtl |
| 1000 | 8694435 | Bw166 | Body weight QTL 166 | 14.08 | 0.001 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 2 | 184856304 | 229856304 | Rat | n/a | region | qtl |
| 1000 | 1331805 | Cm29 | Cardiac mass QTL 29 | 3.50746 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 2 | 143344967 | 251712708 | Rat | n/a | region | qtl |
| 1000 | 1581499 | Esta2 | Estrogen-induced thymic atrophy QTL 2 | | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 2 | 192287802 | 229609668 | Rat | n/a | region | qtl |
| 1000 | 2317752 | Glom23 | Glomerulus QTL 23 | 3.6 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 2 | 196140964 | 251540988 | Rat | n/a | region | qtl |
| 1000 | 631563 | Hcuc3 | Hepatic copper content QTL 3 | 3.87 | | liver copper amount (VT:0003065) | liver copper weight to liver dry weight ratio (CMO:0001512) | 2 | 212145502 | 231732847 | Rat | n/a | region | qtl |
| 1000 | 1331767 | Hrtrt12 | Heart rate QTL 12 | 3.373 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 2 | 221088977 | 243501206 | Rat | n/a | region | qtl |
| 1000 | 61366 | Iddm3 | Insulin dependent diabetes mellitus QTL 3 | 4.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 2 | 192287802 | 237287802 | Rat | n/a | region | qtl |
| 1000 | 2293844 | Kiddil7 | Kidney dilation QTL 7 | 3.5 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 2 | 220274283 | 249795005 | Rat | n/a | region | qtl |
| 1000 | 2293833 | Kiddil8 | Kidney dilation QTL 8 | 2.9 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 2 | 220274283 | 249795005 | Rat | n/a | region | qtl |
| 1000 | 1354649 | Kidm17 | Kidney mass QTL 17 | 2.9 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 2 | 83465462 | 229820014 | Rat | n/a | region | qtl |
| 1000 | 2301408 | Kidm36 | Kidney mass QTL 36 | | 0.002 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 2 | 184482291 | 229482291 | Rat | n/a | region | qtl |
| 1000 | 1598813 | Memor9 | Memory QTL 9 | 2.7 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 2 | 202029709 | 236904960 | Rat | n/a | region | qtl |
| 1000 | 9589044 | Scfw1 | Subcutaneous fat weight QTL 1 | 5.8 | 0.001 | subcutaneous adipose mass (VT:1000472) | abdominal subcutaneous fat pad weight (CMO:0002069) | 2 | 184856304 | 229856304 | Rat | n/a | region | qtl |
| 1000 | 1298075 | Scl17 | Serum cholesterol level QTL 17 | 3.4 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 2 | 214404877 | 251712708 | Rat | n/a | region | qtl |