| 1000 | 1641894 | Alcrsp12 | Alcohol response QTL 12 | | | response to alcohol trait (VT:0010489) | brain neurotensin receptor 1 density (CMO:0002068) | 9 | 27468639 | 72468639 | Rat | n/a | region | qtl |
| 1000 | 1641912 | Alcrsp18 | Alcohol response QTL 18 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 5 | 35189153 | 141643988 | Rat | n/a | region | qtl |
| 1000 | 2306971 | Anxrr21 | Anxiety related response QTL 21 | 9.47 | | fear/anxiety-related behavior trait (VT:1000241) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 5 | 66174080 | 124160948 | Rat | n/a | region | qtl |
| 1000 | 7207814 | Bmd91 | Bone mineral density QTL 91 | 3.5 | | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 9 | 23754144 | 83851531 | Rat | n/a | region | qtl |
| 1000 | 11353957 | Bmd92 | Bone mineral density QTL 92 | | 0.01 | tibia mineral mass (VT:1000283) | volumetric bone mineral density (CMO:0001553) | 9 | 46114199 | 91114199 | Rat | n/a | region | qtl |
| 1000 | 631656 | Bp108 | Blood pressure QTL 108 | 5.97 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 48598251 | 93598251 | Rat | n/a | region | qtl |
| 1000 | 631643 | Bp120 | Blood pressure QTL 120 | 3 | 0.004 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 22071200 | 67071200 | Rat | n/a | region | qtl |
| 1000 | 1358895 | Bp254 | Blood pressure QTL 254 | 3.6 | 0.0003 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 5 | 58829236 | 128034027 | Rat | n/a | region | qtl |
| 1000 | 2303170 | Bp332 | Blood pressure QTL 332 | 3.73 | 0.027 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 55847841 | 77026453 | Rat | n/a | region | qtl |
| 1000 | 2303180 | Bp333 | Blood pressure QTL 333 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 56627713 | 78595166 | Rat | n/a | region | qtl |
| 1000 | 2303180 | Bp333 | Blood pressure QTL 333 | | 0.001 | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 9 | 56627713 | 78595166 | Rat | n/a | region | qtl |
| 1000 | 2303180 | Bp333 | Blood pressure QTL 333 | | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 56627713 | 78595166 | Rat | n/a | region | qtl |
| 1000 | 61352 | Bp34 | Blood pressure QTL 34 | 5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 42495343 | 79271511 | Rat | n/a | region | qtl |
| 1000 | 11353949 | Bp393 | Blood pressure QTL 393 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 40194188 | 85194188 | Rat | n/a | region | qtl |
| 1000 | 11353951 | Bp394 | Blood pressure QTL 394 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 44649921 | 89649921 | Rat | n/a | region | qtl |
| 1000 | 61386 | Bp49 | Blood pressure QTL 49 | 16.6 | | cerebrum integrity trait (VT:0010549) | brain infarction volume (CMO:0001013) | 5 | 60293434 | 98603051 | Rat | n/a | region | qtl |
| 1000 | 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 60293434 | 161481680 | Rat | n/a | region | qtl |
| 1000 | 7411561 | Bw134 | Body weight QTL 134 | 24 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 49463600 | 94463600 | Rat | n/a | region | qtl |
| 1000 | 7411571 | Bw138 | Body weight QTL 138 | 14.3 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 9 | 32535505 | 77535505 | Rat | n/a | region | qtl |
| 1000 | 1300180 | Bw14 | Body weight QTL 14 | 3.776 | | body mass (VT:0001259) | body weight (CMO:0000012) | 9 | 23754024 | 61381613 | Rat | n/a | region | qtl |
| 1000 | 1357396 | Bw44 | Body weight QTL 44 | 4.19 | | body mass (VT:0001259) | body weight (CMO:0000012) | 5 | 68984307 | 104251008 | Rat | n/a | region | qtl |
| 1000 | 1357402 | Bw46 | Body weight QTL 46 | 4.47 | | body mass (VT:0001259) | body mass index (BMI) (CMO:0000105) | 5 | 68984307 | 104251008 | Rat | n/a | region | qtl |
| 1000 | 2302381 | Bw84 | Body weight QTL 84 | 4.47 | | body mass (VT:0001259) | body mass index (BMI) (CMO:0000105) | 5 | 68984307 | 104251008 | Rat | n/a | region | qtl |
| 1000 | 1331757 | Cdexp1 | CD45RC expression in CD8 T cells QTL 1 | 4.3 | | CD8-positive T cell quantity (VT:0008077) | blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990) | 9 | 1024537 | 67509080 | Rat | n/a | region | qtl |
| 1000 | 631680 | Cm11 | Cardiac mass QTL 11 | 3.1 | 0.00089 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 9 | 20430519 | 65430519 | Rat | n/a | region | qtl |
| 1000 | 70218 | Cm28 | Cardiac mass QTL 28 | 8.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 9 | 25268044 | 79271759 | Rat | n/a | region | qtl |
| 1000 | 1578760 | Cm53 | Cardiac mass QTL 53 | 3.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 9 | 56771635 | 101771635 | Rat | n/a | region | qtl |
| 1000 | 61359 | Eaex | Experimental allergic encephalomyelitis QTL x | 3 | | nervous system integrity trait (VT:0010566) | post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422) | 5 | 55715622 | 100715622 | Rat | n/a | region | qtl |
| 1000 | 61380 | Edpm5 | Estrogen-dependent pituitary mass QTL 5 | 4.5 | 0.92 | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 5 | 68984307 | 104251008 | Rat | n/a | region | qtl |
| 1000 | 7394712 | Emca13 | Estrogen-induced mammary cancer QTL 13 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 9823266 | 99753708 | Rat | n/a | region | qtl |
| 1000 | 1576312 | Emca8 | Estrogen-induced mammary cancer QTL 8 | 4.1 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 50328551 | 141643988 | Rat | n/a | region | qtl |
| 1000 | 9589025 | Epfw7 | Epididymal fat weight QTL 7 | 20.66 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 5 | 49463600 | 94463600 | Rat | n/a | region | qtl |
| 1000 | 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | | | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 2138965 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 1576317 | Eutr2 | Estrogen induced uterine response QTL 2 | | 0.01 | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 34730116 | 104251008 | Rat | n/a | region | qtl |
| 1000 | 7411656 | Foco26 | Food consumption QTL 26 | 9.8 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 9 | 32535505 | 77535505 | Rat | n/a | region | qtl |
| 1000 | 1598807 | Glom12 | Glomerulus QTL 12 | 2.7 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 5 | 33215665 | 78215665 | Rat | n/a | region | qtl |
| 1000 | 2303574 | Gluco42 | Glucose level QTL 42 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 53496719 | 98496719 | Rat | n/a | region | qtl |
| 1000 | 2316959 | Gluco59 | Glucose level QTL 59 | 4.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 34944474 | 113558310 | Rat | n/a | region | qtl |
| 1000 | 10058949 | Gmadr5 | Adrenal mass QTL 5 | 2 | 0.014 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight to body weight ratio (CMO:0002411) | 9 | 42791513 | 87976209 | Rat | n/a | region | qtl |
| 1000 | 1300115 | Hrtrt7 | Heart rate QTL 7 | 2.76 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 5 | 47869062 | 90099692 | Rat | n/a | region | qtl |
| 1000 | 1302786 | Kidm8 | Kidney mass QTL 8 | 28.15 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 5 | 33215665 | 78215665 | Rat | n/a | region | qtl |
| 1000 | 634305 | Mamtr1 | Mammary tumor resistance QTL 1 | | 0.0001 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 12789751 | 113558310 | Rat | n/a | region | qtl |
| 1000 | 2290005 | Mcs24 | Mammary carcinoma susceptibility QTL 24 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 64719390 | 109719390 | Rat | n/a | region | qtl |
| 1000 | 70189 | Mcs5 | Mammary carcinoma susceptibility QTL 5 | 10.51 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 55805606 | 132207589 | Rat | n/a | region | qtl |
| 1000 | 1598834 | Memor11 | Memory QTL 11 | 2.5 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 9 | 36962359 | 77814038 | Rat | n/a | region | qtl |
| 1000 | 1598849 | Memor17 | Memory QTL 17 | 2.2 | | exploratory behavior trait (VT:0010471) | difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678) | 9 | 49968546 | 71098346 | Rat | n/a | region | qtl |
| 1000 | 70212 | Niddm25 | Non-insulin dependent diabetes mellitus QTL 25 | 3.54 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 1 | 131345958 | Rat | n/a | region | qtl |
| 1000 | 70186 | Niddm26 | Non-insulin dependent diabetes mellitus QTL 26 | 3.87 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 9 | 22071169 | 86369743 | Rat | n/a | region | qtl |
| 1000 | 2316957 | Pur21 | Proteinuria QTL 21 | 6.2 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 5 | 59793528 | 113558156 | Rat | n/a | region | qtl |
| 1000 | 6903941 | Pur31 | Proteinuria QTL 31 | | 0.036 | urine total protein amount (VT:0000032) | urine protein excretion rate (CMO:0000759) | 9 | 40194188 | 85194188 | Rat | n/a | region | qtl |
| 1000 | 12879506 | Pur33 | Proteinuria QTL 33 | | | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 9 | 44649921 | 89649921 | Rat | n/a | region | qtl |
| 1000 | 1331801 | Rf33 | Renal function QTL 33 | 4.149 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 5 | 43726656 | 129132602 | Rat | n/a | region | qtl |
| 1000 | 1331756 | Rf34 | Renal function QTL 34 | 4.16275 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 5 | 1 | 90450412 | Rat | n/a | region | qtl |
| 1000 | 1331771 | Rf35 | Renal function QTL 35 | 4.36965 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 5 | 729470 | 86724018 | Rat | n/a | region | qtl |
| 1000 | 2316954 | Rf57 | Renal function QTL 57 | 0 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 5 | 59793528 | 90450144 | Rat | n/a | region | qtl |
| 1000 | 1298067 | Scl15 | Serum cholesterol level QTL 15 | 4.8 | 0.001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 33215665 | 78215665 | Rat | n/a | region | qtl |
| 1000 | 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 59793399 | 143070159 | Rat | n/a | region | qtl |
| 1000 | 1331773 | Scl26 | Serum cholesterol level QTL 26 | 3.065 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 43726656 | 86724018 | Rat | n/a | region | qtl |
| 1000 | 6903306 | Scl35 | Serum cholesterol QTL 35 | 2.6 | 0.0073 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 28515489 | 73515489 | Rat | n/a | region | qtl |
| 1000 | 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 40128307 | 148607290 | Rat | n/a | region | qtl |
| 1000 | 2290448 | Scl54 | Serum cholesterol level QTL 54 | 2.93 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 31663789 | 131345958 | Rat | n/a | region | qtl |
| 1000 | 2290450 | Scl57 | Serum cholesterol level QTL 57 | 4.15 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 9 | 36962359 | 95410867 | Rat | n/a | region | qtl |
| 1000 | 2312671 | Scl64 | Serum cholesterol level QTL 64 | | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 68984307 | 104251008 | Rat | n/a | region | qtl |
| 1000 | 10054125 | Srcrt7 | Stress Responsive Cort QTL 7 | 3.33 | 0.0011 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 9 | 1 | 87073594 | Rat | n/a | region | qtl |
| 1000 | 1358353 | Srcrtb2 | Stress Responsive Cort Basal QTL 2 | 3.48 | 0.003 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 5 | 18873947 | 74251464 | Rat | n/a | region | qtl |
| 1000 | 1354598 | Srn6 | Serum renin concentration QTL 6 | 3.8 | | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 5 | 69540295 | 151018848 | Rat | n/a | region | qtl |
| 1000 | 6903292 | Stl28 | Serum triglyceride level QTL 28 | 2.6 | 0.0073 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 5 | 28515489 | 73515489 | Rat | n/a | region | qtl |
| 1000 | 1578767 | Stresp17 | Stress response QTL 17 | 4.3 | 0.01 | blood aldosterone amount (VT:0005346) | plasma aldosterone level (CMO:0000551) | 5 | 27955440 | 72955440 | Rat | n/a | region | qtl |
| 1000 | 1578776 | Stresp18 | Stress response QTL 18 | 2.9 | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 5 | 27955440 | 72955440 | Rat | n/a | region | qtl |
| 1000 | 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 5 | 46711509 | 161317411 | Rat | n/a | region | qtl |
| 1000 | 724515 | Uae16 | Urinary albumin excretion QTL 16 | 8 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 58163035 | 100929646 | Rat | n/a | region | qtl |
| 1000 | 731164 | Uae25 | Urinary albumin excretion QTL 25 | 3.5 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 9 | 25661188 | 100929786 | Rat | n/a | region | qtl |
| 1000 | 724544 | Uae9 | Urinary albumin excretion QTL 9 | 4.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 9 | 25268044 | 114175309 | Rat | n/a | region | qtl |
| 1000 | 2303615 | Vencon7 | Ventilatory control QTL 7 | | 0.001 | respiration trait (VT:0001943) | respiration rate (CMO:0000289) | 5 | 50983895 | 95983895 | Rat | n/a | region | qtl |
| 1000 | 8662828 | Vetf6 | Vascular elastic tissue fragility QTL 6 | 3.9 | | artery integrity trait (VT:0010639) | patent ductus arteriosus score (CMO:0002566) | 9 | 36962359 | 92058970 | Rat | n/a | region | qtl |