| 1000 | 2317055 | Aia10 | Adjuvant induced arthritis QTL 10 | 3.41 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 15 | 75788062 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 2317054 | Aia12 | Adjuvant induced arthritis QTL 12 | 4.24 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 17 | 38281509 | 83281509 | Rat | n/a | region | qtl |
| 1000 | 2317053 | Aia25 | Adjuvant induced arthritis QTL 25 | 2.69 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 17 | 50909196 | 60781426 | Rat | n/a | region | qtl |
| 1000 | 2317060 | Aia26 | Adjuvant induced arthritis QTL 26 | 3.22 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 17 | 38281509 | 83281509 | Rat | n/a | region | qtl |
| 1000 | 61477 | Aia4 | Adjuvant induced arthritis QTL 4 | 3 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 15 | 55596089 | 91365858 | Rat | n/a | region | qtl |
| 1000 | 12903981 | Am17 | Aortic mass QTL 17 | | 0.001 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 1358295 | Aocep1 | Aortic cell protein QTL 1 | 6.1 | 0.00000071 | thoracic aorta cellular protein amount (VT:0010598) | aortic cell percentage | 17 | 40990005 | 85990005 | Rat | n/a | region | qtl |
| 1000 | 1578647 | Bmd17 | Bone mineral density QTL 17 | 4 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 15 | 22806240 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1578646 | Bmd18 | Bone mineral density QTL 18 | 5.2 | | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 15 | 22806240 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 631655 | Bp126 | Blood pressure QTL 126 | 4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 15 | 58156477 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 1300118 | Bp190 | Blood pressure QTL 190 | 2.94 | | arterial blood pressure trait (VT:2000000) | blood pressure measurement (CMO:0000003) | 15 | 82262520 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1300148 | Bp192 | Blood pressure QTL 192 | 3.47 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 17 | 34550843 | 73951021 | Rat | n/a | region | qtl |
| 1000 | 1331724 | Bp223 | Blood pressure QTL 223 | 3.53715 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 15 | 73690518 | 95018228 | Rat | n/a | region | qtl |
| 1000 | 1354619 | Bp242 | Blood pressure QTL 242 | 6.3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 17 | 24599340 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1354635 | Bp245 | Blood pressure QTL 245 | 6 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 17 | 42073160 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1354635 | Bp245 | Blood pressure QTL 245 | 6 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 42073160 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1354581 | Bp247 | Blood pressure QTL 247 | 4.5 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 17 | 1 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1559055 | Bp278 | Blood pressure QTL 278 | | 0.04 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 7488966 | Bp370 | Blood pressure QTL 370 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 23653184 | 57246843 | Rat | n/a | region | qtl |
| 1000 | 10450503 | Bp386 | Blood pressure QTL 386 | | 0.28 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 31368391 | 62109574 | Rat | n/a | region | qtl |
| 1000 | 61394 | Bp8 | Blood pressure QTL 8 | 2.2 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 17 | 23080567 | 59555013 | Rat | n/a | region | qtl |
| 1000 | 631497 | Bp98 | Blood pressure QTL 98 | 3.66 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 17 | 41354651 | 60463643 | Rat | n/a | region | qtl |
| 1000 | 70182 | BpQTLcluster12 | Blood pressure QTL cluster 12 | 3.53 | | arterial blood pressure trait (VT:2000000) | absolute change in mean arterial blood pressure (CMO:0000533) | 15 | 73690657 | 95018120 | Rat | n/a | region | qtl |
| 1000 | 1578660 | Bss19 | Bone structure and strength QTL 19 | 4.3 | | femur morphology trait (VT:0000559) | bone trabecular cross-sectional area (CMO:0002311) | 15 | 22806240 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1549844 | Bss7 | Bone structure and strength QTL 7 | 6.4 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 15 | 75788062 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 4889955 | Bss93 | Bone structure and strength QTL 93 | 4.4 | | tibia size trait (VT:0100001) | tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727) | 17 | 27027949 | 60463643 | Rat | n/a | region | qtl |
| 1000 | 1354588 | Bvd4 | Brain ventricular dilatation QTL 4 | 5.31 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 17 | 53498828 | 82479847 | Rat | n/a | region | qtl |
| 1000 | 1354663 | Bvd5 | Brain ventricular dilatation QTL 5 | 3.51 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 17 | 31990784 | 81292925 | Rat | n/a | region | qtl |
| 1000 | 7411575 | Bw140 | Body weight QTL 140 | 30.2 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 17 | 48560935 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 8694181 | Bw151 | Body weight QTL 151 | 4.36 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 17 | 48560935 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 1354596 | Bw32 | Body weight QTL 32 | 4.5 | | body mass (VT:0001259) | body weight (CMO:0000012) | 17 | 4299130 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 12903978 | Cm118 | Cardiac mass QTL 118 | | 0.001 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 12903979 | Cm119 | Cardiac mass QTL 119 | | 0.001 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 12903980 | Cm120 | Cardiac mass QTL 120 | | 0.002 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 1354630 | Cm34 | Cardiac mass QTL 34 | 8.7 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 17 | 4299130 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1581512 | Cm55 | Cardiac mass QTL 55 | 2.8 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 17 | 27027949 | 56836890 | Rat | n/a | region | qtl |
| 1000 | 2324621 | Coatc5 | Coat color QTL 5 | | | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 17 | 31368391 | 73951021 | Rat | n/a | region | qtl |
| 1000 | 1641889 | Colcr6 | Colorectal carcinoma resistance QTL 6 | 2.9 | 0.0126 | intestine integrity trait (VT:0010554) | benign colorectal tumor surface area measurement (CMO:0001799) | 15 | 73690518 | 99794247 | Rat | n/a | region | qtl |
| 1000 | 1581555 | Eae19 | Experimental allergic encephalomyelitis QTL 19 | 4.7 | | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 15 | 76306099 | 90088744 | Rat | n/a | region | qtl |
| 1000 | 4889894 | Eae33 | Experimental allergic encephalomyelitis QTL 33 | 5.2 | 0.0001 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 17 | 50909099 | 86022412 | Rat | n/a | region | qtl |
| 1000 | 70155 | Gcs1 | Gastric cancer susceptibility QTL1 | 3.8 | | stomach morphology trait (VT:0000470) | stomach tumor susceptibility score (CMO:0002043) | 15 | 76306099 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 2317038 | Ginf3 | Gastrointestinal inflammation QTL 3 | 2.89 | 0.005 | liver integrity trait (VT:0010547) | liver granuloma severity score (CMO:0002157) | 17 | 49920154 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 631516 | Gluco31 | Glucose level QTL 31 | 7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 15 | 55596089 | 95018120 | Rat | n/a | region | qtl |
| 1000 | 2303580 | Gluco49 | Glucose level QTL 49 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 17 | 50040271 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 1331765 | Hrtrt15 | Heart rate QTL 15 | 4.094 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 17 | 15330613 | 55836425 | Rat | n/a | region | qtl |
| 1000 | 1354638 | Insul1 | Insulin level QTL 1 | 4.8 | | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 17 | 4299130 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 2301412 | Kidm40 | Kidney mass QTL 40 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 17 | 37479847 | 82479847 | Rat | n/a | region | qtl |
| 1000 | 1300120 | Kidm7 | Kidney mass QTL 7 | 3.55 | | kidney mass (VT:0002707) | left kidney wet weight to body weight ratio (CMO:0001954) | 15 | 82262520 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 12903982 | Kidm70 | Kidney mass QTL 70 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 17 | 23653184 | 70974005 | Rat | n/a | region | qtl |
| 1000 | 1354651 | Lmblg2 | Limb length QTL 2 | 6 | | tibia length (VT:0004357) | tibia length (CMO:0000450) | 17 | 4299130 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 7394837 | Memor18 | Memory QTL 18 | | | exploratory behavior trait (VT:0010471) | measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957) | 17 | 18640182 | 63640182 | Rat | n/a | region | qtl |
| 1000 | 1598871 | Memor5 | Memory QTL 5 | 5.3 | | exploratory behavior trait (VT:0010471) | total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) | 17 | 40540041 | 80387013 | Rat | n/a | region | qtl |
| 1000 | 61466 | Niddm12 | Non-insulin dependent diabetes mellitus QTL 12 | 3.2 | 0.001 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 17 | 54029929 | 60463637 | Rat | n/a | region | qtl |
| 1000 | 724549 | Niddm56 | Non-insulin dependent diabetes mellitus QTL 56 | | 0.03 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 17 | 31990784 | 76990784 | Rat | n/a | region | qtl |
| 1000 | 8552928 | Pigfal9 | Plasma insulin-like growth factor 1 level QTL 9 | 9 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 17 | 28409147 | 73409147 | Rat | n/a | region | qtl |
| 1000 | 2300326 | Plaw1 | Placental weight QTL 1 | 15 | 0.005 | placenta mass (VT:0004257) | placenta wet weight (CMO:0002088) | 15 | 68327165 | 100062518 | Rat | n/a | region | qtl |
| 1000 | 1300144 | Rf23 | Renal function QTL 23 | 3.61 | | renal blood flow trait (VT:2000006) | absolute change in renal vascular resistance (CMO:0001900) | 15 | 40631268 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1354662 | Rf49 | Renal function QTL 49 | 2.9 | | blood creatinine amount (VT:0005328) | plasma creatinine level (CMO:0000537) | 17 | 1 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1576315 | Schws6 | Schwannoma susceptibility QTL 6 | | 0.0069 | nervous system integrity trait (VT:0010566) | post-insult time of death (CMO:0002005) | 15 | 53806152 | 98806152 | Rat | n/a | region | qtl |
| 1000 | 1354629 | Scl31 | Serum cholesterol level QTL 31 | 4.1 | | blood cholesterol amount (VT:0000180) | blood total cholesterol level (CMO:0000051) | 17 | 50890908 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1354640 | Scl32 | Serum cholesterol level QTL 32 | 5.4 | | blood HDL cholesterol amount (VT:0000184) | blood high density lipoprotein cholesterol level (CMO:0000052) | 17 | 15781592 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1354659 | Scl68 | Serum cholesterol level QTL 68 | 3.9 | | blood VLDL cholesterol amount (VT:0005144) | blood very low density lipoprotein cholesterol level (CMO:0000648) | 17 | 15781592 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 9590107 | Sffal7 | Serum free fatty acids level QTL 7 | 4.81 | 0.001 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 17 | 28409147 | 73409147 | Rat | n/a | region | qtl |
| 1000 | 1354654 | Spl7 | Serum phospholipid level QTL 7 | 5.5 | | blood phospholipid amount (VT:0006084) | blood phospholipid level (CMO:0001169) | 17 | 50890908 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1354658 | Spl8 | Serum phospholipid level QTL 8 | 3.8 | | blood VLDL phospholipid amount (VT:0010507) | blood very low density lipoprotein phospholipid level (CMO:0001571) | 17 | 1 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1354628 | Stl13 | Serum triglyceride level QTL 13 | 3.8 | | blood triglyceride amount (VT:0002644) | blood triglyceride level (CMO:0000118) | 17 | 21293039 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 731177 | Uae26 | Urinary albumin excretion QTL 26 | 2.4 | 0.025 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 15 | 67588667 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 724528 | Uae4 | Urinary albumin excretion QTL 4 | 4.9 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 17 | 35837085 | 69599340 | Rat | n/a | region | qtl |