| 1000 | 2317059 | Aia15 | Adjuvant induced arthritis QTL 15 | 2.46 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 7 | 55072862 | 69399731 | Rat | n/a | region | qtl |
| 1000 | 1641912 | Alcrsp18 | Alcohol response QTL 18 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 5 | 35788756 | 147487820 | Rat | n/a | region | qtl |
| 1000 | 1641922 | Alcrsp8 | Alcohol response QTL 8 | | | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 5 | 35788756 | 70742105 | Rat | n/a | region | qtl |
| 1000 | 1641885 | Alcrsp9 | Alcohol response QTL 9 | | | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 7 | 31381529 | 76381529 | Rat | n/a | region | qtl |
| 1000 | 634336 | Anxrr17 | Anxiety related response QTL 17 | 3.66 | | locomotor behavior trait (VT:0001392) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 7 | 2920071 | 124838025 | Rat | n/a | region | qtl |
| 1000 | 738033 | Anxrr6 | Anxiety related response QTL 6 | 4.1 | | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 7 | 22168412 | 67168412 | Rat | n/a | region | qtl |
| 1000 | 738030 | Anxrr8 | Anxiety related response QTL 8 | 4.1 | | exploratory behavior trait (VT:0010471) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 7 | 54259512 | 99259512 | Rat | n/a | region | qtl |
| 1000 | 1578652 | Bmd15 | Bone mineral density QTL 15 | 5.2 | | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 7 | 12687850 | 67801690 | Rat | n/a | region | qtl |
| 1000 | 2293685 | Bmd21 | Bone mineral density QTL 21 | 4.2 | 0.0003 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 7 | 55495689 | 100495689 | Rat | n/a | region | qtl |
| 1000 | 2293644 | Bmd29 | Bone mineral density QTL 29 | 5.4 | 0.0001 | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 7 | 55495689 | 100495689 | Rat | n/a | region | qtl |
| 1000 | 2293696 | Bmd32 | Bone mineral density QTL 32 | 5.1 | 0.0001 | femur strength trait (VT:0010010) | femoral neck polar moment of inertia (CMO:0001670) | 7 | 55495689 | 100495689 | Rat | n/a | region | qtl |
| 1000 | 2300178 | Bmd54 | Bone mineral density QTL 54 | 5.3 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 7 | 55495689 | 100495689 | Rat | n/a | region | qtl |
| 1000 | 1300132 | Bp182 | Blood pressure QTL 182 | 3.49 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 7 | 25365633 | 93155402 | Rat | n/a | region | qtl |
| 1000 | 1358895 | Bp254 | Blood pressure QTL 254 | 3.6 | 0.0003 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 5 | 60072951 | 133313852 | Rat | n/a | region | qtl |
| 1000 | 10402855 | Bp379 | Blood pressure QTL 379 | | 0.21 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 35867729 | 80867729 | Rat | n/a | region | qtl |
| 1000 | 61357 | Bp38 | Blood pressure QTL 38 | 1.6 | 0.052 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 7 | 48118835 | 128611831 | Rat | n/a | region | qtl |
| 1000 | 61386 | Bp49 | Blood pressure QTL 49 | 16.6 | | cerebrum integrity trait (VT:0010549) | brain infarction volume (CMO:0001013) | 5 | 61612600 | 102331727 | Rat | n/a | region | qtl |
| 1000 | 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 61612600 | 168109659 | Rat | n/a | region | qtl |
| 1000 | 2293678 | Bss24 | Bone structure and strength QTL 24 | 6.71 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 7 | 55495689 | 100495689 | Rat | n/a | region | qtl |
| 1000 | 2293707 | Bss32 | Bone structure and strength QTL 32 | 7.64 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 7 | 55495689 | 100495689 | Rat | n/a | region | qtl |
| 1000 | 2293667 | Bss42 | Bone structure and strength QTL 42 | 7.25 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 7 | 55495689 | 100495689 | Rat | n/a | region | qtl |
| 1000 | 1549840 | Bss5 | Bone structure and strength QTL 5 | 9.8 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 7 | 32035053 | 77035053 | Rat | n/a | region | qtl |
| 1000 | 7411561 | Bw134 | Body weight QTL 134 | 24 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 51804426 | 96804426 | Rat | n/a | region | qtl |
| 1000 | 7411569 | Bw137 | Body weight QTL 137 | | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 7 | 28204653 | 73204653 | Rat | n/a | region | qtl |
| 1000 | 61439 | Cia8 | Collagen induced arthritis QTL 8 | 5.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 7 | 32572942 | 77572942 | Rat | n/a | region | qtl |
| 1000 | 631504 | Cm27 | Cardiac mass QTL 27 | 3.45 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 7 | 50704769 | 128085642 | Rat | n/a | region | qtl |
| 1000 | 1300149 | Cm6 | Cardiac mass QTL 6 | 4.09 | | heart mass (VT:0007028) | heart left ventricle weight to body weight ratio (CMO:0000530) | 7 | 51252005 | 111589099 | Rat | n/a | region | qtl |
| 1000 | 10755440 | Coatc10 | Coat color QTL 10 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 13952179 | 58952179 | Rat | n/a | region | qtl |
| 1000 | 10755451 | Coatc11 | Coat color QTL 11 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 24731465 | 69731465 | Rat | n/a | region | qtl |
| 1000 | 10755453 | Coatc12 | Coat color QTL 12 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 38547706 | 83547706 | Rat | n/a | region | qtl |
| 1000 | 61359 | Eaex | Experimental allergic encephalomyelitis QTL x | 3 | | nervous system integrity trait (VT:0010566) | post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422) | 5 | 56902367 | 101902367 | Rat | n/a | region | qtl |
| 1000 | 7394712 | Emca13 | Estrogen-induced mammary cancer QTL 13 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 9514842 | 103580403 | Rat | n/a | region | qtl |
| 1000 | 1576312 | Emca8 | Estrogen-induced mammary cancer QTL 8 | 4.1 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 51418671 | 147487820 | Rat | n/a | region | qtl |
| 1000 | 9589025 | Epfw7 | Epididymal fat weight QTL 7 | 20.66 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 5 | 51804426 | 96804426 | Rat | n/a | region | qtl |
| 1000 | 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | | | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 1525098 | 78720537 | Rat | n/a | region | qtl |
| 1000 | 1576317 | Eutr2 | Estrogen induced uterine response QTL 2 | | 0.01 | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 35225432 | 108092802 | Rat | n/a | region | qtl |
| 1000 | 7411605 | Foco14 | Food consumption QTL 14 | 24.1 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 7 | 40872682 | 85872682 | Rat | n/a | region | qtl |
| 1000 | 1598807 | Glom12 | Glomerulus QTL 12 | 2.7 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 5 | 34402409 | 79402409 | Rat | n/a | region | qtl |
| 1000 | 2303574 | Gluco42 | Glucose level QTL 42 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 55903593 | 100903593 | Rat | n/a | region | qtl |
| 1000 | 2316959 | Gluco59 | Glucose level QTL 59 | 4.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 35661945 | 117554267 | Rat | n/a | region | qtl |
| 1000 | 634326 | Hc3 | Hypercalciuria QTL 3 | 2.1 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 7 | 50252103 | 95252103 | Rat | n/a | region | qtl |
| 1000 | 1300115 | Hrtrt7 | Heart rate QTL 7 | 2.76 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 5 | 48722038 | 93587756 | Rat | n/a | region | qtl |
| 1000 | 1300138 | Hrtrt9 | Heart rate QTL 9 | 4.72 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 7 | 35867729 | 61047824 | Rat | n/a | region | qtl |
| 1000 | 10059592 | Kidm45 | Kidney mass QTL 45 | 3.95 | 0.025 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 7 | 14445685 | 59445685 | Rat | n/a | region | qtl |
| 1000 | 10059605 | Kidm47 | Kidney mass QTL 47 | 2.91 | 0.05 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 7 | 54534996 | 73293934 | Rat | n/a | region | qtl |
| 1000 | 1300179 | Kidm5 | Kidney mass QTL 5 | 3.51 | | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 7 | 51251919 | 145729302 | Rat | n/a | region | qtl |
| 1000 | 1302786 | Kidm8 | Kidney mass QTL 8 | 28.15 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 5 | 34402409 | 79402409 | Rat | n/a | region | qtl |
| 1000 | 631534 | Lnnr1 | Liver neoplastic nodule remodeling QTL 1 | 3.85 | 0.001 | liver integrity trait (VT:0010547) | liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705) | 7 | 40872682 | 85872682 | Rat | n/a | region | qtl |
| 1000 | 634305 | Mamtr1 | Mammary tumor resistance QTL 1 | | 0.0001 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 12651967 | 117554267 | Rat | n/a | region | qtl |
| 1000 | 70189 | Mcs5 | Mammary carcinoma susceptibility QTL 5 | 10.51 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 56991667 | 137729065 | Rat | n/a | region | qtl |
| 1000 | 70190 | Mcs6 | Mammary carcinoma susceptibility QTL 6 | 2.29 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 7 | 33044449 | 71352127 | Rat | n/a | region | qtl |
| 1000 | 2298547 | Neuinf5 | Neuroinflammation QTL 5 | 3.7 | | nervous system integrity trait (VT:0010566) | spinal cord Cd74 protein level (CMO:0002131) | 7 | 12328467 | 67193263 | Rat | n/a | region | qtl |
| 1000 | 70212 | Niddm25 | Non-insulin dependent diabetes mellitus QTL 25 | 3.54 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 1 | 136640934 | Rat | n/a | region | qtl |
| 1000 | 1643004 | Pain2 | Pain QTL 2 | 1 | | mechanical nociception trait (VT:0002734) | self mutilation severity score (CMO:0002145) | 7 | 12328467 | 106995532 | Rat | n/a | region | qtl |
| 1000 | 8552954 | Pigfal14 | Plasma insulin-like growth factor 1 level QTL 14 | 9 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 21904363 | 66904363 | Rat | n/a | region | qtl |
| 1000 | 2316957 | Pur21 | Proteinuria QTL 21 | 6.2 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 5 | 61086653 | 117554114 | Rat | n/a | region | qtl |
| 1000 | 2316952 | Pur22 | Proteinuria QTL 22 | 5.2 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 7 | 55072862 | 123602998 | Rat | n/a | region | qtl |
| 1000 | 1331801 | Rf33 | Renal function QTL 33 | 4.149 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 5 | 44404276 | 134502294 | Rat | n/a | region | qtl |
| 1000 | 1331756 | Rf34 | Renal function QTL 34 | 4.16275 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 5 | 1 | 93273395 | Rat | n/a | region | qtl |
| 1000 | 1331771 | Rf35 | Renal function QTL 35 | 4.36965 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 5 | 1 | 89432042 | Rat | n/a | region | qtl |
| 1000 | 2316954 | Rf57 | Renal function QTL 57 | 0 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 5 | 61086653 | 93273130 | Rat | n/a | region | qtl |
| 1000 | 2316947 | Rf58 | Renal function QTL 58 | 7.8 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 7 | 55072862 | 123602998 | Rat | n/a | region | qtl |
| 1000 | 1298067 | Scl15 | Serum cholesterol level QTL 15 | 4.8 | 0.001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 34402409 | 79402409 | Rat | n/a | region | qtl |
| 1000 | 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 61086525 | 149030144 | Rat | n/a | region | qtl |
| 1000 | 1331773 | Scl26 | Serum cholesterol level QTL 26 | 3.065 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 44404276 | 89432042 | Rat | n/a | region | qtl |
| 1000 | 61428 | Scl3 | Serum cholesterol level QTL 3 | 3.2 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 7 | 53200344 | 98200344 | Rat | n/a | region | qtl |
| 1000 | 6903306 | Scl35 | Serum cholesterol QTL 35 | 2.6 | 0.0073 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 29641661 | 74641661 | Rat | n/a | region | qtl |
| 1000 | 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 40777918 | 154732375 | Rat | n/a | region | qtl |
| 1000 | 2290448 | Scl54 | Serum cholesterol level QTL 54 | 2.93 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 31926122 | 136640934 | Rat | n/a | region | qtl |
| 1000 | 631513 | Scl7 | Serum cholesterol level QTL 7 | 4.1 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 7 | 45301573 | 90301573 | Rat | n/a | region | qtl |
| 1000 | 10053722 | Scort27 | Serum corticosterone level QTL 27 | 2.41 | 0.0083 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 7 | 50793818 | 95793818 | Rat | n/a | region | qtl |
| 1000 | 1354639 | Spl5 | Serum phospholipid level QTL 5 | 3.9 | | blood LDL phospholipid amount (VT:0010505) | blood low density lipoprotein phospholipid level (CMO:0001568) | 7 | 25365633 | 60317612 | Rat | n/a | region | qtl |
| 1000 | 1358361 | Sradr5 | Stress Responsive Adrenal Weight QTL 5 | 5.55 | | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 7 | 51251919 | 118477612 | Rat | n/a | region | qtl |
| 1000 | 1358353 | Srcrtb2 | Stress Responsive Cort Basal QTL 2 | 3.48 | 0.003 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 5 | 18847913 | 76608178 | Rat | n/a | region | qtl |
| 1000 | 1300127 | Srn1 | Serum renin concentration QTL 1 | 3.87 | | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 7 | 35867729 | 93155402 | Rat | n/a | region | qtl |
| 1000 | 2316955 | Stl24 | Serum triglyceride level QTL 24 | 7.1 | | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 7 | 55072862 | 123602998 | Rat | n/a | region | qtl |
| 1000 | 6903292 | Stl28 | Serum triglyceride level QTL 28 | 2.6 | 0.0073 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 5 | 29641661 | 74641661 | Rat | n/a | region | qtl |
| 1000 | 1578767 | Stresp17 | Stress response QTL 17 | 4.3 | 0.01 | blood aldosterone amount (VT:0005346) | plasma aldosterone level (CMO:0000551) | 5 | 29078899 | 74078899 | Rat | n/a | region | qtl |
| 1000 | 1578776 | Stresp18 | Stress response QTL 18 | 2.9 | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 5 | 29078899 | 74078899 | Rat | n/a | region | qtl |
| 1000 | 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 5 | 47745646 | 167946134 | Rat | n/a | region | qtl |
| 1000 | 2303629 | Vencon3 | Ventilatory control QTL 3 | 7.25 | | respiration trait (VT:0001943) | respiration rate (CMO:0000289) | 7 | 47895099 | 63372754 | Rat | n/a | region | qtl |
| 1000 | 2303615 | Vencon7 | Ventilatory control QTL 7 | | 0.001 | respiration trait (VT:0001943) | respiration rate (CMO:0000289) | 5 | 53309568 | 98309568 | Rat | n/a | region | qtl |
| 1000 | 8662454 | Vetf3 | Vascular elastic tissue fragility QTL 3 | 27.4 | | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 5 | 1666587 | 71552720 | Rat | n/a | region | qtl |