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| Relevance | RGD ID | Symbol | Name | LOD | P Value | Trait | Sub Trait | Chr | Start | Stop | Species | Annotations | Match | Type |
| 1000 | 70212 | Niddm25 | Non-insulin dependent diabetes mellitus QTL 25 | 3.54 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 1 | 131345958 | Rat | n/a | region | qtl | |
| 1000 | 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 2138965 | 166875058 | Rat | n/a | region | qtl | ||
| 1000 | 2290448 | Scl54 | Serum cholesterol level QTL 54 | 2.93 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 31663789 | 131345958 | Rat | n/a | region | qtl | |
| 1000 | 1641912 | Alcrsp18 | Alcohol response QTL 18 | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 5 | 35189153 | 141643988 | Rat | n/a | region | qtl | ||
| 1000 | 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 40128307 | 148607290 | Rat | n/a | region | qtl | |
| 1000 | 1331801 | Rf33 | Renal function QTL 33 | 4.149 | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 5 | 43726656 | 129132602 | Rat | n/a | region | qtl | |
| 1000 | 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 5 | 46711509 | 161317411 | Rat | n/a | region | qtl | |
| 1000 | 1576312 | Emca8 | Estrogen-induced mammary cancer QTL 8 | 4.1 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 50328551 | 141643988 | Rat | n/a | region | qtl | |
| 1000 | 70189 | Mcs5 | Mammary carcinoma susceptibility QTL 5 | 10.51 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 55805606 | 132207589 | Rat | n/a | region | qtl | |
| 1000 | 1358895 | Bp254 | Blood pressure QTL 254 | 3.6 | 0.0003 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 5 | 58829236 | 128034027 | Rat | n/a | region | qtl |
| 1000 | 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 59793399 | 143070159 | Rat | n/a | region | qtl |
| 1000 | 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 60293434 | 161481680 | Rat | n/a | region | qtl |
| 1000 | 2306971 | Anxrr21 | Anxiety related response QTL 21 | 9.47 | fear/anxiety-related behavior trait (VT:1000241) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 5 | 66174080 | 124160948 | Rat | n/a | region | qtl | |
| 1000 | 1354598 | Srn6 | Serum renin concentration QTL 6 | 3.8 | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 5 | 69540295 | 151018848 | Rat | n/a | region | qtl | |
| 1000 | 1598846 | Bp293 | Blood pressure QTL 293 | 3.9 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 79584860 | 124584860 | Rat | n/a | region | qtl | |
| 1000 | 1598859 | Cm66 | Cardiac mass QTL 66 | 2 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 79584860 | 124584860 | Rat | n/a | region | qtl | |
| 1000 | 1298070 | Scl18 | Serum cholesterol level QTL 18 | 3.7 | blood LDL cholesterol amount (VT:0000181) | calculated plasma low density lipoprotein cholesterol level (CMO:0001245) | 5 | 79584860 | 124584860 | Rat | n/a | region | qtl | |
| 1000 | 1302790 | Scl20 | Serum cholesterol level QTL 20 | 6.4 | 0.0001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 82394392 | 166664054 | Rat | n/a | region | qtl |
| 1000 | 1298086 | Bp156 | Blood pressure QTL 156 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 84132602 | 129132602 | Rat | n/a | region | qtl | ||
| 1000 | 7411564 | Bw135 | Body weight QTL 135 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 87468046 | 132468046 | Rat | n/a | region | qtl | |
| 1000 | 7411601 | Foco12 | Food consumption QTL 12 | 19.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 5 | 87468046 | 132468046 | Rat | n/a | region | qtl |
| 1000 | 7411582 | Foco3 | Food consumption QTL 3 | 7.5 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 5 | 87468046 | 132468046 | Rat | n/a | region | qtl |
| 1000 | 6903316 | Bw113 | Body weight QTL 113 | 2 | 0.0103 | body mass (VT:0001259) | body weight (CMO:0000012) | 5 | 87765973 | 132765973 | Rat | n/a | region | qtl |
| 1000 | 1358889 | Bp261 | Blood pressure QTL 261 | 2.86 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 5 | 90067849 | 128034027 | Rat | n/a | region | qtl | |
| 1000 | 1358909 | Kidm25 | Kidney mass QTL 25 | 1.87 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 5 | 90067849 | 128034027 | Rat | n/a | region | qtl | |
| 1000 | 631527 | Tls1 | T-lymphoma susceptibility QTL 1 | 0 | 0.001 | thymus integrity trait (VT:0010555) | post-insult time to onset of T-cell lymphoma (CMO:0001907) | 5 | 90450144 | 135450144 | Rat | n/a | region | qtl |
| 1000 | 61452 | Ciaa5 | CIA Autoantibody QTL 5 | 3.5 | blood autoantibody amount (VT:0003725) | calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281) | 5 | 94858972 | 143070159 | Rat | n/a | region | qtl | |
| 1000 | 1331796 | Thshl2 | Thyroid stimulating hormone level QTL 2 | 2.3 | blood thyroid-stimulating hormone amount (VT:0005119) | serum thyroid stimulating hormone level (CMO:0001248) | 5 | 97059760 | 147465714 | Rat | n/a | region | qtl | |
| 1000 | 2317753 | Glom24 | Glomerulus QTL 24 | 3.1 | kidney glomerulus integrity trait (VT:0010546) | kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269) | 5 | 97570330 | 136479578 | Rat | n/a | region | qtl | |
| 1000 | 1358187 | Emca1 | Estrogen-induced mammary cancer QTL 1 | 4.4 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 5 | 99216724 | 148607142 | Rat | n/a | region | qtl | |
| 1000 | 1578673 | Bmd13 | Bone mineral density QTL 13 | 4.9 | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 5 | 103689353 | 148689353 | Rat | n/a | region | qtl | |
| 1000 | 2317056 | Wbc3 | White blood cell count QTL 3 | 2.51 | 0.01 | leukocyte quantity (VT:0000217) | white blood cell count (CMO:0000027) | 5 | 105999803 | 150999803 | Rat | n/a | region | qtl |
| 1000 | 7207481 | Bss106 | Bone structure and strength QTL 106 | 7.9 | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 7207486 | Bss109 | Bone structure and strength QTL 109 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | ||
| 1000 | 7207488 | Bss110 | Bone structure and strength QTL 1 | 8.4 | femur strength trait (VT:0010010) | femur stiffness (CMO:0001674) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 7207491 | Bss112 | Bone structure and strength QTL 112 | 7 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 1549838 | Bss4 | Bone structure and strength QTL 4 | 9.2 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 1598847 | Cm62 | Cardiac mass QTL 62 | 3.4 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 108845856 | 153845856 | Rat | n/a | region | qtl | |
| 1000 | 1298089 | Scl14 | Serum cholesterol level QTL 14 | 5.8 | 0.0004 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 108845856 | 153845856 | Rat | n/a | region | qtl |
| 1000 | 8657050 | Bw146 | Body weight QTL 146 | 19.84 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 108938288 | 153938288 | Rat | n/a | region | qtl |
| 1000 | 8694198 | Abfw3 | Abdominal fat weight QTL 3 | 16.13 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8694389 | Bw160 | Body weight QTL 160 | 6.17 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8694441 | Bw169 | Body weight QTL 169 | 17.61 | 0.001 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8552960 | Pigfal15 | Plasma insulin-like growth factor 1 level QTL 15 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl | ||
| 1000 | 7794739 | Bp372 | Blood pressure QTL 372 | 0.0058 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 117913688 | 125222967 | Rat | n/a | region | qtl | |
| 1000 | 1582230 | Bw78 | Body weight QTL 78 | 3.2 | 0.0016 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 5 | 119085612 | 128034027 | Rat | n/a | region | qtl |
| 1000 | 7411547 | Bw129 | Body weight QTL 129 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 6 | 5564495 | 46669029 | Rat | n/a | region | qtl | |
| 1000 | 634351 | Apr5 | Acute phase response QTL 5 | 6.7 | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 12 | 1 | 44503507 | Rat | n/a | region | qtl | |
| 1000 | 1598855 | Bp294 | Blood pressure QTL 294 | 3.5 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 12 | 1 | 34851688 | Rat | n/a | region | qtl | |
| 1000 | 6893681 | Bw109 | Body weight QTL 109 | 2.3 | 0.004 | body mass (VT:0001259) | body weight (CMO:0000012) | 12 | 1 | 23297788 | Rat | n/a | region | qtl |
| 1000 | 7411545 | Bw128 | Body weight QTL 128 | 5.2 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 8694179 | Bw150 | Body weight QTL 150 | 2.9 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 1581516 | Cm56 | Cardiac mass QTL 56 | 4.2 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 12 | 1 | 29333307 | Rat | n/a | region | qtl |
| 1000 | 10755457 | Coatc14 | Coat color QTL 14 | 0.01759 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 12 | 1 | 22591684 | Rat | n/a | region | qtl | |
| 1000 | 7411660 | Foco28 | Food consumption QTL 28 | 10.9 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411586 | Foco5 | Food consumption QTL 5 | 5.4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411595 | Foco9 | Food consumption QTL 9 | 4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 9590086 | Insglur6 | Insulin/glucose ratio QTL 6 | 18.97 | 0.001 | blood insulin amount (VT:0001560) | calculated plasma insulin level (CMO:0002170) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 2303575 | Insul14 | Insulin level QTL 14 | 4 | blood insulin amount (VT:0001560) | blood insulin level (CMO:0000349) | 12 | 1 | 42450532 | Rat | n/a | region | qtl | |
| 1000 | 2312418 | Kidm41 | Kidney mass QTL 41 | 3.7 | 0.0001 | kidney mass (VT:0002707) | single kidney wet weight to body weight ratio (CMO:0000622) | 12 | 1 | 19611090 | Rat | n/a | region | qtl |
| 1000 | 737979 | Pia22 | Pristane induced arthritis QTL 22 | 53.1 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 1 | 44465750 | Rat | n/a | region | qtl | |
| 1000 | 2302042 | Pia38 | Pristane induced arthritis QTL 38 | 3.5 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 12 | 1 | 44503507 | Rat | n/a | region | qtl |
| 1000 | 9590147 | Scort7 | Serum corticosterone level QTL 7 | 13.61 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 634350 | Apr4 | Acute phase response QTL 4 | 6 | orosomucoid 1 amount (VT:0010541) | plasma orosomucoid 1 level (CMO:0001467) | 12 | 1172005 | 46172005 | Rat | n/a | region | qtl | |
| 1000 | 7411597 | Foco10 | Food consumption QTL 10 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl | |
| 1000 | 7411641 | Foco19 | Food consumption QTL 19 | 27.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 7411588 | Foco6 | Food consumption QTL 6 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl | |
| 1000 | 8552964 | Pigfal17 | Plasma insulin-like growth factor 1 level QTL 17 | 3.5 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl | |
| 1000 | 8552918 | Pigfal7 | Plasma insulin-like growth factor 1 level QTL 7 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl | ||
| 1000 | 8552912 | Pigfal6 | Plasma insulin-like growth factor 1 level QTL 6 | 5 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564498 | 46669029 | Rat | n/a | region | qtl | |
| 1000 | 10059594 | Kidm46 | Kidney mass QTL 46 | 3.79 | 0.025 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 12 | 6107579 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 1600391 | Edcs2 | Endometrial carcinoma susceptibility QTL2 | 3.5 | 0.01 | uterus morphology trait (VT:0001120) | percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) | 12 | 6833190 | 17870186 | Rat | n/a | region | qtl |
| 1000 | 1302792 | Scl21 | Serum cholesterol level QTL 21 | 3.8 | 0.0011 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 12 | 7196730 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 2293086 | Iddm30 | Insulin dependent diabetes mellitus QTL 30 | 3.82 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 12 | 8449490 | 28302290 | Rat | n/a | region | qtl | |
| 1000 | 61331 | Eau2 | Experimental allergic uveoretinitis QTL 2 | 0.0005 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 12 | 8525423 | 28064601 | Rat | n/a | region | qtl | |
| 1000 | 1331739 | Hrtrt14 | Heart rate QTL 14 | 3.56232 | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 12 | 9318216 | 12829686 | Rat | n/a | region | qtl | |
| 1000 | 1300157 | Rf21 | Renal function QTL 21 | 4.4 | renal blood flow trait (VT:2000006) | absolute change in renal blood flow rate (CMO:0001168) | 12 | 9318216 | 32103380 | Rat | n/a | region | qtl | |
| 1000 | 1549829 | Scl48 | Serum cholesterol level QTL 48 | 5 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 12 | 9603277 | 46669029 | Rat | n/a | region | qtl | |
| 1000 | 2300186 | Bmd59 | Bone mineral density QTL 59 | 7.1 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 12 | 10474137 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 2293699 | Bss49 | Bone structure and strength QTL 49 | 5.61 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra trabecular cross-sectional area (CMO:0001692) | 12 | 10474137 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 1331761 | Bp218 | Blood pressure QTL 218 | 2.973 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 12 | 11073825 | 45055165 | Rat | n/a | region | qtl | |
| 1000 | 1331755 | Bp219 | Blood pressure QTL 219 | 3.041 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 12 | 11073825 | 28064557 | Rat | n/a | region | qtl | |
| 1000 | 1331786 | Kidm11 | Kidney mass QTL 11 | 3.571 | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 12 | 11073825 | 24234895 | Rat | n/a | region | qtl | |
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