| 1000 | 2317045 | Aia11 | Adjuvant induced arthritis QTL 11 | 4.06 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 17 | 60781426 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 2317054 | Aia12 | Adjuvant induced arthritis QTL 12 | 4.24 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 17 | 38281509 | 83281509 | Rat | n/a | region | qtl |
| 1000 | 2317060 | Aia26 | Adjuvant induced arthritis QTL 26 | 3.22 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 17 | 38281509 | 83281509 | Rat | n/a | region | qtl |
| 1000 | 1358295 | Aocep1 | Aortic cell protein QTL 1 | 6.1 | 0.00000071 | thoracic aorta cellular protein amount (VT:0010598) | aortic cell percentage | 17 | 40990005 | 85990005 | Rat | n/a | region | qtl |
| 1000 | 1354588 | Bvd4 | Brain ventricular dilatation QTL 4 | 5.31 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 17 | 53498828 | 82479847 | Rat | n/a | region | qtl |
| 1000 | 1354663 | Bvd5 | Brain ventricular dilatation QTL 5 | 3.51 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 17 | 31990784 | 81292925 | Rat | n/a | region | qtl |
| 1000 | 7411575 | Bw140 | Body weight QTL 140 | 30.2 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 17 | 48560935 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 7411577 | Bw141 | Body weight QTL 141 | | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 17 | 62619516 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 8694181 | Bw151 | Body weight QTL 151 | 4.36 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 17 | 48560935 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 12904736 | Cm121 | Cardiac mass QTL 121 | | 0.043 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 17 | 71774621 | 82479847 | Rat | n/a | region | qtl |
| 1000 | 631502 | Cm26 | Cardiac mass QTL 26 | 3.71 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 17 | 65703580 | 81153923 | Rat | n/a | region | qtl |
| 1000 | 4889894 | Eae33 | Experimental allergic encephalomyelitis QTL 33 | 5.2 | 0.0001 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 17 | 50909099 | 86022412 | Rat | n/a | region | qtl |
| 1000 | 2317038 | Ginf3 | Gastrointestinal inflammation QTL 3 | 2.89 | 0.005 | liver integrity trait (VT:0010547) | liver granuloma severity score (CMO:0002157) | 17 | 49920154 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 2302365 | Gluco40 | Glucose level QTL 40 | 4.79 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 17 | 57246843 | 82046127 | Rat | n/a | region | qtl |
| 1000 | 2303580 | Gluco49 | Glucose level QTL 49 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 17 | 50040271 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 2301412 | Kidm40 | Kidney mass QTL 40 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 17 | 37479847 | 82479847 | Rat | n/a | region | qtl |
| 1000 | 1598871 | Memor5 | Memory QTL 5 | 5.3 | | exploratory behavior trait (VT:0010471) | total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) | 17 | 40540041 | 80387013 | Rat | n/a | region | qtl |
| 1000 | 1300129 | Rf25 | Renal function QTL 25 | 3.03 | | blood creatinine amount (VT:0005328) | creatinine clearance (CMO:0000765) | 17 | 71003325 | 81153923 | Rat | n/a | region | qtl |