| 1000 | 2313399 | Anxrr28 | Anxiety related response QTL 28 | | | aggression-related behavior trait (VT:0015014) | tameness/aggressiveness composite score (CMO:0002136) | 6 | 100671796 | 132340886 | Rat | n/a | region | qtl |
| 1000 | 1641917 | Colcr5 | Colorectal carcinoma resistance QTL 5 | 3.18 | 0.0009 | intestine integrity trait (VT:0010554) | benign colorectal tumor number (CMO:0001795) | 6 | 122549046 | 137801795 | Rat | n/a | region | qtl |
| 1000 | 61329 | Eae9 | Experimental allergic encephalomyelitis QTL 9 | 3.7 | | body mass (VT:0001259) | change in body weight (CMO:0002045) | 6 | 122549046 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 1300076 | Glom8 | Glomerulus QTL 8 | 7 | 0.000000009 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli directly contacting the kidney surface (CMO:0001001) | 6 | 86894788 | 131894788 | Rat | n/a | region | qtl |
| 1000 | 2293085 | Iddm29 | Insulin dependent diabetes mellitus QTL 29 | 7.66 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 6 | 122549046 | 140286318 | Rat | n/a | region | qtl |
| 1000 | 71111 | Iddm8 | Insulin dependent diabetes mellitus QTL 8 | 1.9 | 0.002 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 6 | 105156861 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 4145118 | Mcs26 | Mammary carcinoma susceptibility QTL 26 | | 0.0001 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 6 | 106752656 | 132339866 | Rat | n/a | region | qtl |
| 1000 | 737976 | Pia24 | Pristane induced arthritis QTL 24 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 6 | 112636280 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 61414 | Pia3 | Pristane induced arthritis QTL 3 | 4.5 | | joint integrity trait (VT:0010548) | post-insult time to onset of experimental arthritis (CMO:0001450) | 6 | 94968928 | 137848904 | Rat | n/a | region | qtl |
| 1000 | 2312560 | Pur20 | Proteinuria QTL 20 | 2.1 | 0.005 | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 6 | 125628133 | 137801795 | Rat | n/a | region | qtl |
| 1000 | 12801411 | Schws8 | Schwannoma susceptibility QTL 8 | | | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 94968928 | 139968928 | Rat | n/a | region | qtl |
| 1000 | 1358355 | Srcrt4 | Stress Responsive Cort QTL 4 | 6.39 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 100364669 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 724513 | Uae14 | Urinary albumin excretion QTL 14 | 6.5 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 85311061 | 133478515 | Rat | n/a | region | qtl |
| 1000 | 731173 | Uae22 | Urinary albumin excretion QTL 22 | 10.1 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 65531555 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 2290393 | Uae37 | Urinary albumin excretion QTL 37 | | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 65531555 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 2303624 | Vencon5 | Ventilatory control QTL 5 | 4.45 | | respiration trait (VT:0001943) | minute ventilation (CMO:0000132) | 6 | 88047916 | 133047916 | Rat | n/a | region | qtl |
| 1000 | 8552796 | Vie3 | Viral induced encephalitis QTL 3 | 2.6 | | brain integrity trait (VT:0010579) | encephalitis incidence/prevalence measurement (CMO:0002361) | 6 | 96833997 | 140994061 | Rat | n/a | region | qtl |