| 1000 | 13825247 | Agoc2_m | agouti coat color QTL 2 (mouse) | | | | | 2 | 151841920 | 159841920 | Mouse | n/a | region | qtl |
| 1000 | 1301348 | Alcp5_m | alcohol preference locus 5 (mouse) | | | Not determined | | 2 | 163486407 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1301677 | Alcp6_m | alcohol preference locus 6 (mouse) | | | Not determined | | 2 | 163486407 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1300806 | Aod4_m | autoimmune ovarian dysgenesis 4 (mouse) | | | Not determined | | 2 | 145228719 | 179228841 | Mouse | n/a | region | qtl |
| 1000 | 13504830 | Bacsq1_m | baculum shape QTL 1 (mouse) | | | | | 2 | 145716184 | 161016184 | Mouse | n/a | region | qtl |
| 1000 | 11353826 | Bdln10_m | body length 10 (mouse) | | | | | 2 | 140441482 | 174441482 | Mouse | n/a | region | qtl |
| 1000 | 1301031 | Bdln3_m | body length 3 (mouse) | | | Not determined | | 2 | 127664019 | 161664118 | Mouse | n/a | region | qtl |
| 1000 | 1300751 | Bdt1_m | bone density traits 1 (mouse) | | | Not determined | | 2 | 149988902 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1301618 | Bglu1_m | blood glucose level 1 (mouse) | | | Not determined | | 2 | 117942930 | 174324863 | Mouse | n/a | region | qtl |
| 1000 | 1301783 | Bhr1_m | bronchial hyperresponsiveness 1 (mouse) | | | Not determined | | 2 | 142593476 | 178442452 | Mouse | n/a | region | qtl |
| 1000 | 1301019 | Bmd6_m | bone mineral density 6 (mouse) | | | Not determined | | 2 | 151778297 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 13524521 | Bodwtq2_m | body wweight QTL 2 (mouse) | | | | | 2 | 153456184 | 156386184 | Mouse | n/a | region | qtl |
| 1000 | 1357484 | Bsbob_m | BSB obesity (mouse) | | | Not determined | | 2 | 143773445 | 165665019 | Mouse | n/a | region | qtl |
| 1000 | 1301961 | Bts1_m | bladder tumor susceptibility 1 (mouse) | | | Not determined | | 2 | 132024159 | 166024330 | Mouse | n/a | region | qtl |
| 1000 | 12790983 | Bwq12_m | body weight QTL 12 (mouse) | | | | | 2 | 148238204 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1302143 | Bwq5_m | body weight (mouse) | | | Not determined | | 2 | 127664019 | 161664118 | Mouse | n/a | region | qtl |
| 1000 | 10054066 | Bwq9_m | body weight QTL 9 (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 1300622 | Cfld1_m | cystic fibrosis lung disease 1 (mouse) | | | Not determined | | 2 | 155823920 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 4141703 | Chlq13_m | circulating hormone level QTL 13 (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 10045885 | Cplaq15_m | circadian period of locomotor activity 15 (mouse) | | | Not determined | | 2 | 110916118 | 154354667 | Mouse | n/a | region | qtl |
| 1000 | 1357862 | Epfq1_m | epididymal fat pad weight QTL 1 (mouse) | | | Not determined | | 2 | 151640941 | 162737074 | Mouse | n/a | region | qtl |
| 1000 | 1357435 | Epfq2_m | epididymal fat pad weight QTL 2 (mouse) | | | Not determined | | 2 | 162736926 | 178442452 | Mouse | n/a | region | qtl |
| 1000 | 27226749 | Femd10_m | femur midshaft diameter 10, 16 week (mouse) | | | | | 2 | 124441920 | 168241920 | Mouse | n/a | region | qtl |
| 1000 | 27226788 | Feml13_m | femur length 13, 10 week (mouse) | | | | | 2 | 102630345 | 159941920 | Mouse | n/a | region | qtl |
| 1000 | 27226761 | Feml18_m | femur length 18, 16 week (mouse) | | | | | 2 | 94230345 | 154241920 | Mouse | n/a | region | qtl |
| 1000 | 1558917 | Gct8_m | granulosa cell tumorigenesis 8 (mouse) | | | Not determined | | 2 | 149236907 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1558939 | Gnf1_m | growth and fatness 1 (mouse) | | | Not determined | | 2 | 143773445 | 169117924 | Mouse | n/a | region | qtl |
| 1000 | 1558852 | Gnf2_m | growth and fatness 2 (mouse) | | | Not determined | | 2 | 152699221 | 162197085 | Mouse | n/a | region | qtl |
| 1000 | 1558867 | Gnf3_m | growth and fatness 3 (mouse) | | | Not determined | | 2 | 152699221 | 169117924 | Mouse | n/a | region | qtl |
| 1000 | 10043956 | Gnf5_m | growth and fatness 5 (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 1301865 | Hdlq19_m | HDL QTL 19 (mouse) | | | Not determined | | 2 | 145518775 | 179518926 | Mouse | n/a | region | qtl |
| 1000 | 1301378 | Hpdty_m | hindlimb polydactyly (mouse) | | | Not determined | | 2 | 165664893 | 168623678 | Mouse | n/a | region | qtl |
| 1000 | 1301588 | Hrec_m | hemotopoietic response to early cytokines (mouse) | | | Not determined | | 2 | 154553217 | 159428450 | Mouse | n/a | region | qtl |
| 1000 | 1301294 | Hrtfm5_m | heart failure modifier 5 (mouse) | | | Not determined | | 2 | 122883015 | 156883131 | Mouse | n/a | region | qtl |
| 1000 | 10412080 | Hylaq2_m | Hyperlocomotor activity related QTL 2 (mouse) | | | Not determined | | 2 | 151640941 | 164119146 | Mouse | n/a | region | qtl |
| 1000 | 12801461 | Intim1_m | intima modifier 1 (mouse) | | | | | 2 | 142428347 | 176428450 | Mouse | n/a | region | qtl |
| 1000 | 12801456 | Intmrm1_m | intima/media ratio modifier 1 (mouse) | | | | | 2 | 142428347 | 176428450 | Mouse | n/a | region | qtl |
| 1000 | 12738428 | Lfibq19_m | liver fibrosis QTL 19 (mouse) | | | | | 2 | 180732670 | 181449318 | Mouse | n/a | region | qtl |
| 1000 | 12738409 | Lfibq1_m | liver fibrosis QTL 1 (mouse) | | | | | 2 | 167716420 | 179207088 | Mouse | n/a | region | qtl |
| 1000 | 1357537 | Lith12_m | lithogenic gene 12 (mouse) | | | Not determined | | 2 | 156196464 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 4142450 | Lmr16_m | leishmaniasis resistance 16 (mouse) | | | Not determined | | 2 | 150212221 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 11049566 | Lmr28e_m | leishmaniasis resistance 28e (mouse) | | | | | 2 | 133144911 | 167145058 | Mouse | n/a | region | qtl |
| 1000 | 11049567 | Lmr28f_m | leishmaniasis resistance 28f (mouse) | | | | | 2 | 133144911 | 167145058 | Mouse | n/a | region | qtl |
| 1000 | 1300867 | Lore2_m | loss of righting induced by ethanol 2 (mouse) | | | Not determined | | 2 | 144515861 | 180896594 | Mouse | n/a | region | qtl |
| 1000 | 1301085 | Lrnx10_m | learning-contextual 10 (mouse) | | | Not determined | | 2 | 150212221 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 11038702 | Ltpr2_m | Leishmania tropica response 2 (mouse) | | | | | 2 | 103095716 | 167212356 | Mouse | n/a | region | qtl |
| 1000 | 11038701 | Ltpr2e_m | Leishmania tropica response 2e (mouse) | | | | | 2 | 150212221 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 14747002 | Mancz3_m | mandible centroid size 3 (mouse) | | | | | 2 | 152329820 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 5491197 | Mobq5_m | multigenic obesity QTL 5 (mouse) | | | Not determined | | 2 | 65269746 | 162518926 | Mouse | n/a | region | qtl |
| 1000 | 5491196 | Mobq6_m | multigenic obesity QTL 6 (mouse) | | | Not determined | | 2 | 85724269 | 180896594 | Mouse | n/a | region | qtl |
| 1000 | 1300688 | Nidd2k_m | Nidd2 on KK-A (mouse) | | | Not determined | | 2 | 158078337 | 178442452 | Mouse | n/a | region | qtl |
| 1000 | 4142211 | Nilac3_m | nicotine induced locomotor activity 3 (mouse) | | | Not determined | | 2 | 148664893 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1300846 | Pbwg11_m | postnatal body weight growth 11 (mouse) | | | Not determined | | 2 | 138966600 | 172966729 | Mouse | n/a | region | qtl |
| 1000 | 1301822 | Pgia2_m | proteoglycan induced arthritis 2 (mouse) | | | Not determined | | 2 | 123937311 | 157937424 | Mouse | n/a | region | qtl |
| 1000 | 1300676 | Prdt2_m | prion disease incubation time 2 (mouse) | | | Not determined | | 2 | 164515154 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 12910814 | Pwbwq1_m | pre-weaning body weight QTL 1 (mouse) | | | | | 2 | 118589253 | 160611165 | Mouse | n/a | region | qtl |
| 1000 | 12910810 | Pwbwq2_m | pre-weaning body weight QTL 2 (mouse) | | | | | 2 | 160611165 | 169794802 | Mouse | n/a | region | qtl |
| 1000 | 12910811 | Pwbwq3_m | pre-weaning body weight QTL 3 (mouse) | | | | | 2 | 169794802 | 178920791 | Mouse | n/a | region | qtl |
| 1000 | 12910795 | Pwbwq5_m | post-weaning body weight QTL 5 (mouse) | | | | | 2 | 118589253 | 160611165 | Mouse | n/a | region | qtl |
| 1000 | 12910812 | Pwgrq1_m | pre-weaning growth rate QTL 1 (mouse) | | | | | 2 | 118589253 | 160611165 | Mouse | n/a | region | qtl |
| 1000 | 12910799 | Pwgrq2_m | pre-weaning growth rate QTL 2 (mouse) | | | | | 2 | 118589253 | 160611165 | Mouse | n/a | region | qtl |
| 1000 | 12910800 | Pwgrq3_m | pre-weaning growth rate QTL 3 (mouse) | | | | | 2 | 160611165 | 169794802 | Mouse | n/a | region | qtl |
| 1000 | 1301907 | Rends_m | renal disease susceptibility (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 11341717 | Rvfs1_m | Rift Valley fever susceptibility 1 (mouse) | | | | | 2 | 135432544 | 173449616 | Mouse | n/a | region | qtl |
| 1000 | 1357772 | Scfq1_m | subcutaneous fat pad weight QTL 1 (mouse) | | | Not determined | | 2 | 151640941 | 162737074 | Mouse | n/a | region | qtl |
| 1000 | 12910520 | Scgq3_m | spontaneous crescentic glomerulonephritis QTL 3 (mouse) | | | | | 2 | 151709273 | 174389124 | Mouse | n/a | region | qtl |
| 1000 | 1357685 | Skts13_m | skin tumor sucseptibility 13 (mouse) | | | Not determined | | 2 | 168623533 | 172405326 | Mouse | n/a | region | qtl |
| 1000 | 1302003 | Sluc17_m | susceptibility to lung cancer 17 (mouse) | | | Not determined | | 2 | 162433493 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1558842 | Tailq2_m | tail length QTL 2 (mouse) | | | Not determined | | 2 | 151640941 | 162737074 | Mouse | n/a | region | qtl |
| 1000 | 1558991 | Tailq4_m | tail length QTL 4 (mouse) | | | Not determined | | 2 | 162736926 | 178442452 | Mouse | n/a | region | qtl |
| 1000 | 1302013 | Tbbmd3_m | total body bone mineral density 3 (mouse) | | | Not determined | | 2 | 145196949 | 179197085 | Mouse | n/a | region | qtl |
| 1000 | 12880427 | V25Dq3_m | vitamin D inactive form serum level QTL 3 (mouse) | | | | | 2 | 129341920 | 163341920 | Mouse | n/a | region | qtl |
| 1000 | 1558748 | Vacq1_m | voluntary alcohol consumption QTL 1 (mouse) | | | Not determined | | 2 | 178442338 | 181515280 | Mouse | n/a | region | qtl |
| 1000 | 4141033 | Wg2d_m | weight gain in high growth mice 2d (mouse) | | | Not determined | | | 143773445 | 160303008 | Mouse | n/a | region | qtl |