| 1000 | 4142291 | Aec2_m | autoimmune exocrinopathy 2 (mouse) | | | Not determined | | | 52457737 | 182250592 | Mouse | n/a | region | qtl |
| 1000 | 13504831 | Bacszq1_m | baculum size QTL 1 (mouse) | | | | | 1 | 134331161 | 148128608 | Mouse | n/a | region | qtl |
| 1000 | 10401248 | Bglu12_m | blood glucose level 12 (mouse) | | | Not determined | | 1 | 110553179 | 144553298 | Mouse | n/a | region | qtl |
| 1000 | 1301710 | Bmd5_m | bone mineral density 5 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1300696 | Bpq2_m | blood pressure QTL 2 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1558720 | Bpq8_m | blood pressure QTL 8 (mouse) | | | Not determined | | 1 | 143284665 | 177284803 | Mouse | n/a | region | qtl |
| 1000 | 11039528 | Ccc3_m | colitis susceptibility in the Collaborative Cross 3 (mouse) | | | | | 1 | 3680142 | 195051546 | Mouse | n/a | region | qtl |
| 1000 | 1301523 | Ccrs1_m | corpus callosum hemisphere surface size 1 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1301722 | Cia9_m | collagen induced arthritis QTL 9 (mouse) | | | Not determined | | 1 | 45783900 | 189303617 | Mouse | n/a | region | qtl |
| 1000 | 1302193 | Cpfd1_m | cerebellum pattern fissures (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 4141160 | Cq1_m | cholesterol QTL 1 (mouse) | | | Not determined | | 1 | 139452188 | 173452308 | Mouse | n/a | region | qtl |
| 1000 | 1302098 | Eila1_m | ethanol induced locomotor activity 1 (mouse) | | | Not determined | | 1 | 112008822 | 175468938 | Mouse | n/a | region | qtl |
| 1000 | 1301608 | Emo3_m | emotionality 3 (mouse) | | | Not determined | | 1 | 129130858 | 163130993 | Mouse | n/a | region | qtl |
| 1000 | 10766465 | Emo5_m | emotionality 5 (mouse) | | | | | 1 | 143875076 | 146778212 | Mouse | n/a | region | qtl |
| 1000 | 1302161 | Exq2_m | exploratory and excitability QTL 2 (mouse) | | | Not determined | | 1 | 118099720 | 152099816 | Mouse | n/a | region | qtl |
| 1000 | 27226799 | Feml5_m | femur length 5, 5 week (mouse) | | | | | 1 | 122027729 | 164827569 | Mouse | n/a | region | qtl |
| 1000 | 4141233 | Femwf12_m | femur work to failure 12 (mouse) | | | Not determined | | | 141233173 | 175233272 | Mouse | n/a | region | qtl |
| 1000 | 4141914 | Gcsfis_m | G-CSF induced splenomegaly (mouse) | | | Not determined | | | 74516235 | 148715579 | Mouse | n/a | region | qtl |
| 1000 | 10412185 | Hcs9_m | hepatocarcinogenesis susceptibility 9 (mouse) | | | Not determined | | 1 | 63854690 | 189303617 | Mouse | n/a | region | qtl |
| 1000 | 1301151 | Hdlq14_m | HDL QTL 14 (mouse) | | | Not determined | | 1 | 142489543 | 176489734 | Mouse | n/a | region | qtl |
| 1000 | 1302128 | Ity3_m | immunity to S. typhimurium 3 (mouse) | | | Not determined | | 11 | 131156308 | 165139464 | Mouse | n/a | region | qtl |
| 1000 | 10045640 | Jckm4_m | juvenile cystic kidney modifier 4 (mouse) | | | Not determined | | 1 | 116290836 | 150290937 | Mouse | n/a | region | qtl |
| 1000 | 1357753 | Kidq2_m | kidney weight QTL 2 (mouse) | | | Not determined | | 1 | 34760138 | 150193871 | Mouse | n/a | region | qtl |
| 1000 | 11049576 | Lmr8a_m | leishmaniasis resistance 8a (mouse) | | | | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1301408 | Lore8_m | loss of righting induced by ethanol 8 (mouse) | | | Not determined | | 1 | 135877901 | 169878015 | Mouse | n/a | region | qtl |
| 1000 | 1300989 | Lrdg1_m | light induced retinal degeneration 1 (mouse) | | | Not determined | | 1 | 73755175 | 147125370 | Mouse | n/a | region | qtl |
| 1000 | 1301149 | Lrnx12_m | learning-contextual 12 (mouse) | | | Not determined | | 1 | 112008822 | 168186402 | Mouse | n/a | region | qtl |
| 1000 | 14746980 | Manh50_m | mandible shape 50 (mouse) | | | | | 1 | 134131564 | 168131564 | Mouse | n/a | region | qtl |
| 1000 | 27226740 | Metcl13_m | metatarsal-calcaneal length 13, 16 week (mouse) | | | | | 1 | 121727729 | 153775746 | Mouse | n/a | region | qtl |
| 1000 | 27226743 | Metcl7_m | metatarsal-calcaneal length 7, 10 week (mouse) | | | | | 1 | 121727729 | 153875746 | Mouse | n/a | region | qtl |
| 1000 | 1301350 | Nidd4k_m | Nidd4 on KK-A (mouse) | | | Not determined | | 7 | 82291982 | 147125370 | Mouse | n/a | region | qtl |
| 1000 | 10412162 | Nobq3_m | New Zealand obese QTL 3 (mouse) | | | Not determined | | 1 | 103933405 | 191225397 | Mouse | n/a | region | qtl |
| 1000 | 1357600 | Obq17_m | obesity QTL 17 (mouse) | | | Not determined | | 1 | 110553179 | 144553298 | Mouse | n/a | region | qtl |
| 1000 | 1357434 | Obsty1_m | obesity 1 (mouse) | | | Not determined | | 1 | 136209950 | 170210094 | Mouse | n/a | region | qtl |
| 1000 | 1301467 | Pcir1_m | periosteal circumference 1 (mouse) | | | Not determined | | 1 | 141233173 | 175233272 | Mouse | n/a | region | qtl |
| 1000 | 27095928 | Pglq6_m | pelvic girdle length QTL 6, 10 week (mouse) | | | | | 1 | 75976637 | 148775742 | Mouse | n/a | region | qtl |
| 1000 | 11533913 | Rd6m1_m | retinal degeneration 6 modifier 1 (mouse) | | | | | 1 | 141233173 | 175233272 | Mouse | n/a | region | qtl |
| 1000 | 1301249 | Sbw1_m | splenomegaly-NZB x NZW 1 (mouse) | | | Not determined | | 1 | 112131005 | 146131085 | Mouse | n/a | region | qtl |
| 1000 | 27095915 | Scvln13_m | sacral vertebrae length 2, 16 week (mouse) | | | | | 1 | 117527730 | 179827565 | Mouse | n/a | region | qtl |
| 1000 | 27095913 | Scvln2_m | sacral vertebrae length 2, 5 week (mouse) | | | | | 1 | 94127725 | 148775742 | Mouse | n/a | region | qtl |
| 1000 | 27095901 | Scvln8_m | sacral vertebrae length 2, 10 week (mouse) | | | | | 1 | 94127725 | 172027567 | Mouse | n/a | region | qtl |
| 1000 | 26884448 | Sklq1_m | skull length QTL 1, 5 week (mouse) | | | | | 1 | 75976637 | 181327565 | Mouse | n/a | region | qtl |
| 1000 | 1301458 | Skts8_m | skin tumor susceptibility 8 (mouse) | | | Not determined | | 1 | 135794822 | 169795012 | Mouse | n/a | region | qtl |
| 1000 | 1301894 | Skull2_m | skull morphology 2 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1357488 | Splq3_m | spleen weight QTL 3 (mouse) | | | Not determined | | 1 | 34760138 | 150193871 | Mouse | n/a | region | qtl |
| 1000 | 1300841 | Ssial1_m | susceptibility to sialadenitis 1 (mouse) | | | Not determined | | 1 | 63920002 | 153557562 | Mouse | n/a | region | qtl |
| 1000 | 1301191 | Stia1_m | serum transfer induced arthritis 1 (mouse) | | | Not determined | | 1 | 141233173 | 175233272 | Mouse | n/a | region | qtl |
| 1000 | 27226767 | Tibl10_m | tibia length 10, 10 week (mouse) | | | | | 1 | 121727729 | 164827569 | Mouse | n/a | region | qtl |
| 1000 | 27226779 | Tibl1_m | tibia length 1, 5 week (mouse) | | | | | 1 | 95527725 | 162027569 | Mouse | n/a | region | qtl |
| 1000 | 1300740 | Tne1_m | total number errors (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 13824984 | Twq5_m | testis weight QTL 5 (mouse) | | | | | 1 | 3069992 | 184732197 | Mouse | n/a | region | qtl |
| 1000 | 27095935 | Ulnl5_m | ulna length 5, 10 week (mouse) | | | | | 1 | 128727737 | 181327565 | Mouse | n/a | region | qtl |
| 1000 | 12880408 | V125Dq3_m | vitamin D active form serum level QTL 3 (mouse) | | | | | 1 | 122927738 | 156927738 | Mouse | n/a | region | qtl |
| 1000 | 1357602 | Vtbt2_m | vertebral trabecular bone trait 2 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1558860 | W10q7_m | weight 10 weeks QTL 7 (mouse) | | | Not determined | | 1 | 34760138 | 150193871 | Mouse | n/a | region | qtl |
| 1000 | 4142014 | Wbcq5_m | white blood cell quantitative locus 5 (mouse) | | | Not determined | | 1 | 141095010 | 175095156 | Mouse | n/a | region | qtl |