| 1000 | 4142139 | Adip12_m | adiposity 12 (mouse) | | | Not determined | | 4 | 124621281 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 15039378 | Adip30_m | adiposity 30 (mouse) | | | | | 4 | 105705794 | 139705794 | Mouse | n/a | region | qtl |
| 1000 | 10047132 | Albq19_m | albuminuria QTL 19 (mouse) | | | Not determined | | 4 | 112824389 | 146824389 | Mouse | n/a | region | qtl |
| 1000 | 1300537 | Ap3q_m | alcohol preference 3 QTL (mouse) | | | Not determined | | 4 | 134654451 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 1301382 | Arvm2_m | autoimmune renal vasculitis 2 (mouse) | | | Not determined | | 4 | 107791564 | 141791756 | Mouse | n/a | region | qtl |
| 1000 | 1301267 | Bcmd2_m | B cell maturation defect 2 (mouse) | | | Not determined | | 4 | 133154678 | 150789451 | Mouse | n/a | region | qtl |
| 1000 | 1302102 | Bis1_m | beta-carboline-induced seizures 1 (mouse) | | | Not determined | | 4 | 119864433 | 153864536 | Mouse | n/a | region | qtl |
| 1000 | 1301823 | Bmd7_m | bone mineral density 7 (mouse) | | | Not determined | | 4 | 88982069 | 151654550 | Mouse | n/a | region | qtl |
| 1000 | 13503348 | Bntq18_m | bone traits QTL 18 (mouse) | | | | | 4 | 120617848 | 154617995 | Mouse | n/a | region | qtl |
| 1000 | 15039377 | Bw45_m | body weight QTL 45 (mouse) | | | | | 4 | 105705794 | 139705794 | Mouse | n/a | region | qtl |
| 1000 | 1301964 | Bw8q2_m | body weight at 8 weeks QTL 2 (mouse) | | | Not determined | | 4 | 119864433 | 153864536 | Mouse | n/a | region | qtl |
| 1000 | 1300809 | Ccrs2_m | corpus callosum hemisphere surface size 2 (mouse) | | | Not determined | | 4 | 107264957 | 141265153 | Mouse | n/a | region | qtl |
| 1000 | 1300933 | Cdcs9_m | cytokine deficiency colitis susceptibility 9 (mouse) | | | Not determined | | 4 | 125230872 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 4142061 | Chlq16_m | circulating hormone level QTL 16 (mouse) | | | Not determined | | 4 | 121342649 | 155342753 | Mouse | n/a | region | qtl |
| 1000 | 1357895 | Ctrcts_m | cataract severity (mouse) | | | Not determined | | 4 | 45709925 | 138342753 | Mouse | n/a | region | qtl |
| 1000 | 10412210 | Cypr6_m | cytokine production 6 (mouse) | | | Not determined | | 4 | 120617848 | 154617995 | Mouse | n/a | region | qtl |
| 1000 | 1300839 | Dyscalc2_m | dystrophic cardiac calcinosis 2 (mouse) | | | Not determined | | 4 | 111009051 | 145009280 | Mouse | n/a | region | qtl |
| 1000 | 11567249 | Elorr3_m | ethanol induced loss of righting response 3 (mouse) | | | | | 4 | 3722677 | 156268235 | Mouse | n/a | region | qtl |
| 1000 | 1301452 | Elsgp1_m | elevated serum gp70 1 (mouse) | | | Not determined | | 4 | 121342649 | 155342753 | Mouse | n/a | region | qtl |
| 1000 | 27226757 | Femd1_m | femur midshaft diameter 1, 5 week (mouse) | | | | | 4 | 123993793 | 144326570 | Mouse | n/a | region | qtl |
| 1000 | 4142493 | Femwf13_m | femur work to failure 13 (mouse) | | | Not determined | | | 116154678 | 150154782 | Mouse | n/a | region | qtl |
| 1000 | 1300917 | Gasa1_m | gastritis type A susceptibility locus 1 (mouse) | | | Not determined | | 4 | 124055093 | 142438020 | Mouse | n/a | region | qtl |
| 1000 | 1300874 | Gasa2_m | gastritis type A susceptibility locus 2 (mouse) | | | Not determined | | 4 | 133010494 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 4142481 | Gct1_m | granulosa cell tumorigenesis 1 (mouse) | | | Not determined | | 4 | 127784226 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 10043996 | Gct5_m | granulosa cell tumorigenesis 5 (mouse) | | | Not determined | | 4 | 127784226 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 10755521 | Hct1_m | hematocrit 1 (mouse) | | | | | 4 | 108477692 | 142477692 | Mouse | n/a | region | qtl |
| 1000 | 10045620 | Heal22_m | wound healing/regeneration 22 (mouse) | | | Not determined | | 4 | 125230872 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 10755522 | Hgb1_m | hemoglobin 1 (mouse) | | | | | 4 | 108477692 | 142477692 | Mouse | n/a | region | qtl |
| 1000 | 4142077 | Ignpq2_m | IgA nephropathy QTL 2 (mouse) | | | Not determined | | 4 | 133676733 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 1300781 | Lith8_m | lithogenic gene 8 (mouse) | | | Not determined | | 4 | 107264957 | 141265153 | Mouse | n/a | region | qtl |
| 1000 | 1301525 | Lmb1_m | lupus in MRL and B6 F2 cross (mouse) | | | Not determined | | 4 | 124264957 | 150676858 | Mouse | n/a | region | qtl |
| 1000 | 1301584 | Lrdg2_m | light induced retinal degeneration 2 (mouse) | | | Not determined | | 4 | 129465811 | 151654550 | Mouse | n/a | region | qtl |
| 1000 | 15039382 | Ltgq7_m | liver triglyceride QTL 7 (mouse) | | | | | 4 | 105705794 | 139705794 | Mouse | n/a | region | qtl |
| 1000 | 39128212 | Lwq21_m | liver weight QTL 21 (mouse) | | | | | 4 | 88982069 | 140468203 | Mouse | n/a | region | qtl |
| 1000 | 10755531 | Lymph3_m | lymphocyte differential 3 (mouse) | | | | | 4 | 124553483 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 14746982 | Manh56_m | mandible shape 56 (mouse) | | | | | 4 | 117815917 | 151815917 | Mouse | n/a | region | qtl |
| 1000 | 11533916 | Mts1_m | mammary tumor susceptibility 1 (mouse) | | | | | 4 | 125289325 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 15039385 | Mvlq3_m | macrovesicular liver lesion QTL 3 (mouse) | | | | | 4 | 112182386 | 146182386 | Mouse | n/a | region | qtl |
| 1000 | 4141154 | Nba1_m | New Zealand Black autoimmunity 1 (mouse) | | | Not determined | | | 131650724 | 140879275 | Mouse | n/a | region | qtl |
| 1000 | 1301982 | Pltiq1_m | phospholipid transfer protein inducibility QTL 1 (mouse) | | | Not determined | | 4 | 124621281 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 4142082 | Psds2_m | psoriasis-like skin disease severity 2 (mouse) | | | Not determined | | 4 | 133154678 | 137617995 | Mouse | n/a | region | qtl |
| 1000 | 12910813 | Pwbwq4_m | pre-weaning body weight QTL 4 (mouse) | | | | | 4 | 105835310 | 141433838 | Mouse | n/a | region | qtl |
| 1000 | 12910794 | Pwbwq8_m | post-weaning body weight QTL 8 (mouse) | | | | | 4 | 105835310 | 141433838 | Mouse | n/a | region | qtl |
| 1000 | 12910808 | Pwbwq9_m | post-weaning body weight QTL 9 (mouse) | | | | | 4 | 105835310 | 141433838 | Mouse | n/a | region | qtl |
| 1000 | 12910797 | Pwgrq4_m | pre-weaning growth rate QTL 4 (mouse) | | | | | 4 | 105835310 | 141433838 | Mouse | n/a | region | qtl |
| 1000 | 10755520 | Rbc1_m | red blood cell count 1 (mouse) | | | | | 4 | 108477692 | 142477692 | Mouse | n/a | region | qtl |
| 1000 | 1301108 | Scon2_m | sucrose consumption 2 (mouse) | | | Not determined | | 4 | 134654451 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 4141065 | Shali2_m | survival time to hyperoxic acute lung injury 2 (mouse) | | | Not determined | | | 124055093 | 141572792 | Mouse | n/a | region | qtl |
| 1000 | 12050091 | Shm2_m | sperm head morphology 2 (mouse) | | | | | 4 | 136876000 | 138342753 | Mouse | n/a | region | qtl |
| 1000 | 26884437 | Sklq13_m | skull length QTL 13, 16 week (mouse) | | | | | 4 | 57700000 | 155684457 | Mouse | n/a | region | qtl |
| 1000 | 26884445 | Sklq7_m | skull length QTL 7, 10 week (mouse) | | | | | 4 | 68018237 | 150884457 | Mouse | n/a | region | qtl |
| 1000 | 1300743 | Skull6_m | skull morphology 6 (mouse) | | | Not determined | | 4 | 111009051 | 145009280 | Mouse | n/a | region | qtl |
| 1000 | 1301815 | Sles2_m | systemic lupus erythmatosus suppressor 2 (mouse) | | | Not determined | | 4 | 94957579 | 150676858 | Mouse | n/a | region | qtl |
| 1000 | 1302078 | Sluc21_m | susceptibility to lung cancer 21 (mouse) | | | Not determined | | 4 | 117401141 | 151401275 | Mouse | n/a | region | qtl |
| 1000 | 1300803 | Sluc6_m | susceptibility to lung cancer 6 (mouse) | | | Not determined | | 4 | 120674005 | 154674151 | Mouse | n/a | region | qtl |
| 1000 | 4141180 | Ssic1_m | susceptibility to small intestinal cancer 1 (mouse) | | | Not determined | | | 120674005 | 154674151 | Mouse | n/a | region | qtl |
| 1000 | 4141779 | Ssrq8_m | stress response QTL 8 (mouse) | | | Not determined | | | 136876000 | 137617995 | Mouse | n/a | region | qtl |
| 1000 | 1300663 | Start2_m | startle response 2 (mouse) | | | Not determined | | 4 | 107264957 | 141265153 | Mouse | n/a | region | qtl |
| 1000 | 10043985 | Stheal12_m | soft tissue heal 12 (mouse) | | | Not determined | | 4 | 121342649 | 155342753 | Mouse | n/a | region | qtl |
| 1000 | 25314312 | Syncl2_m | synaptonemal complex length 2 (mouse) | | | | | 4 | 65718237 | 146584457 | Mouse | n/a | region | qtl |
| 1000 | 1300858 | Tafat_m | tally ho associated mesenteric fat pad weight (mouse) | | | Not determined | | 4 | 124621281 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 4141001 | Tgq17_m | triglyceride QTL 17 (mouse) | | | Not determined | | | 112523489 | 146523489 | Mouse | n/a | region | qtl |
| 1000 | 1357800 | Tgq3_m | triglyceride QTL 3 (mouse) | | | Not determined | | 4 | 107055093 | 141055180 | Mouse | n/a | region | qtl |
| 1000 | 1302149 | Tlsr2_m | thymic lymphoma suppressor region 2 (mouse) | | | Not determined | | 4 | 124264957 | 142230960 | Mouse | n/a | region | qtl |
| 1000 | 1300621 | Tpnr1_m | thermal pain response 1 (mouse) | | | Not determined | | 4 | 125230872 | 156860686 | Mouse | n/a | region | qtl |
| 1000 | 4141549 | W10q10_m | weight 10 weeks QTL 10 (mouse) | | | Not determined | | | 88982069 | 140468203 | Mouse | n/a | region | qtl |
| 1000 | 4141093 | W3q17_m | weight 3 weeks QTL 17 (mouse) | | | Not determined | | | 88982069 | 140468203 | Mouse | n/a | region | qtl |
| 1000 | 4141623 | W6q13_m | weight 6 weeks QTL 13 (mouse) | | | Not determined | | | 88982069 | 140468203 | Mouse | n/a | region | qtl |
| 1000 | 13208562 | Wght7_m | weight 7 (mouse) | | | | | 4 | 90888237 | 148084457 | Mouse | n/a | region | qtl |