| 1000 | 1301370 | Adip1_m | adiposity 1 (mouse) | | | Not determined | | 1 | 2882194 | 36882352 | Mouse | n/a | region | qtl |
| 1000 | 11039528 | Ccc3_m | colitis susceptibility in the Collaborative Cross 3 (mouse) | | | | | 1 | 3680142 | 195051546 | Mouse | n/a | region | qtl |
| 1000 | 14700685 | Civq2_m | cerebral infarct volume QTL 2 (mouse) | | | | | 1 | 11340482 | 45340482 | Mouse | n/a | region | qtl |
| 1000 | 11100001 | Col4a1m1_m | collagen, type IV, alpha 1 modifier 1 (mouse) | | | | | 1 | 25550191 | 62946882 | Mouse | n/a | region | qtl |
| 1000 | 1301011 | Cplaq4_m | circadian period of locomotor activity 4 (mouse) | | | Not determined | | 1 | 9673442 | 43673601 | Mouse | n/a | region | qtl |
| 1000 | 1357824 | Estoq4_m | embryo survival total QTL 4 (mouse) | | | Not determined | | 1 | 34760138 | 73976915 | Mouse | n/a | region | qtl |
| 1000 | 4142433 | Hbnr1_m | Heligmosomoides bakeri nematode resistance 1 (mouse) | | | Not determined | | | 25550191 | 58273271 | Mouse | n/a | region | qtl |
| 1000 | 1357753 | Kidq2_m | kidney weight QTL 2 (mouse) | | | Not determined | | 1 | 34760138 | 150193871 | Mouse | n/a | region | qtl |
| 1000 | 1357651 | Lgq5_m | late growth QTL 5 (mouse) | | | Not determined | | 1 | 34760138 | 73976915 | Mouse | n/a | region | qtl |
| 1000 | 15092055 | Lgrme1_m | late growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 39128207 | Lwq16_m | liver weight QTL 16 (mouse) | | | | | 1 | 34760138 | 73976915 | Mouse | n/a | region | qtl |
| 1000 | 10043970 | Obq23_m | obesity QTL 23 (mouse) | | | Not determined | | 1 | 5012665 | 39012665 | Mouse | n/a | region | qtl |
| 1000 | 1301471 | Obq2_m | obesity QTL 2 (mouse) | | | Not determined | | 1 | 3941620 | 37941887 | Mouse | n/a | region | qtl |
| 1000 | 1301073 | Orch5_m | autoimmune orchitis resistance 5 (mouse) | | | Not determined | | 1 | 19065351 | 53065454 | Mouse | n/a | region | qtl |
| 1000 | 1301756 | Pgia1_m | proteoglycan induced arthritis 1 (mouse) | | | Not determined | | 1 | 19065351 | 53065454 | Mouse | n/a | region | qtl |
| 1000 | 1301275 | Sle10_m | systematic lupus erythematosus susceptibility 10 (mouse) | | | Not determined | | 1 | 2882194 | 36882352 | Mouse | n/a | region | qtl |
| 1000 | 1301240 | Sluc15_m | susceptibility to lung cancer 15 (mouse) | | | Not determined | | 1 | 19065351 | 53065454 | Mouse | n/a | region | qtl |
| 1000 | 1357488 | Splq3_m | spleen weight QTL 3 (mouse) | | | Not determined | | 1 | 34760138 | 150193871 | Mouse | n/a | region | qtl |
| 1000 | 13824984 | Twq5_m | testis weight QTL 5 (mouse) | | | | | 1 | 3069992 | 184732197 | Mouse | n/a | region | qtl |
| 1000 | 12880409 | V125Dq1_m | vitamin D active form serum level QTL 1 (mouse) | | | | | 1 | 26039160 | 60039160 | Mouse | n/a | region | qtl |
| 1000 | 12880407 | V125Dq2_m | vitamin D active form serum level QTL 2 (mouse) | | | | | 1 | 19339081 | 53339081 | Mouse | n/a | region | qtl |
| 1000 | 1357506 | W10q6_m | weight 10 weeks QTL 6 (mouse) | | | Not determined | | 1 | 34760138 | 73976915 | Mouse | n/a | region | qtl |
| 1000 | 1558860 | W10q7_m | weight 10 weeks QTL 7 (mouse) | | | Not determined | | 1 | 34760138 | 150193871 | Mouse | n/a | region | qtl |
| 1000 | 1357759 | W3q12_m | weight 3 weeks QTL 12 (mouse) | | | Not determined | | 1 | 34760138 | 73976915 | Mouse | n/a | region | qtl |
| 1000 | 1357475 | w3q13_m | weight 3 weeks QTL 13 (mouse) | | | Not determined | | 1 | 23109591 | 73976915 | Mouse | n/a | region | qtl |
| 1000 | 1357524 | W6q14_m | weight 6 weeks QTL 14 (mouse) | | | Not determined | | 1 | 34760138 | 73976915 | Mouse | n/a | region | qtl |
| 1000 | 15092051 | Wegrme1_m | week eight growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 15092046 | Wngrme1_m | week nine growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 15092050 | Wsegrme1_m | week seven growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 15092048 | Wsigrme1_m | week six growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |
| 1000 | 15092044 | Wtgrme1_m | week ten growth rate, maternal effect 1 (mouse) | | | | | 1 | 3280142 | 37782236 | Mouse | n/a | region | qtl |