| 1000 | 12790996 | Aath2_m | aortic arch atherosclerosis 2 (mouse) | | | | | 1 | 145077630 | 179077630 | Mouse | n/a | region | qtl |
| 1000 | 12791001 | Aath6_m | aortic arch atherosclerosis 6 (mouse) | | | | | 1 | 147219390 | 181219390 | Mouse | n/a | region | qtl |
| 1000 | 4142291 | Aec2_m | autoimmune exocrinopathy 2 (mouse) | | | Not determined | | | 52457737 | 182250592 | Mouse | n/a | region | qtl |
| 1000 | 1301818 | Ap1q_m | alcohol preference 1 QTL (mouse) | | | Not determined | | 1 | 146908199 | 167586222 | Mouse | n/a | region | qtl |
| 1000 | 1301710 | Bmd5_m | bone mineral density 5 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1300696 | Bpq2_m | blood pressure QTL 2 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1558720 | Bpq8_m | blood pressure QTL 8 (mouse) | | | Not determined | | 1 | 143284665 | 177284803 | Mouse | n/a | region | qtl |
| 1000 | 11039528 | Ccc3_m | colitis susceptibility in the Collaborative Cross 3 (mouse) | | | | | 1 | 3680142 | 195051546 | Mouse | n/a | region | qtl |
| 1000 | 1301523 | Ccrs1_m | corpus callosum hemisphere surface size 1 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1300934 | Cfbw1_m | cystic fibrosis body weight 1 (mouse) | | | Not determined | | 1 | 145145207 | 179145325 | Mouse | n/a | region | qtl |
| 1000 | 4141554 | Cfmq1_m | cystic fibrosis modifier QTL 1 (mouse) | | | Not determined | | 1 | 152038741 | 186038913 | Mouse | n/a | region | qtl |
| 1000 | 12903996 | Cfq5_m | conditioned fear QTL 5 (mouse) | | | | | 1 | 150606337 | 159307464 | Mouse | n/a | region | qtl |
| 1000 | 1301614 | Cgnz1_m | chronic glomerulonephritis in NZM 1 (mouse) | | | Not determined | | 1 | 152038741 | 186038913 | Mouse | n/a | region | qtl |
| 1000 | 1300777 | Chol10_m | cholesterol 10 (mouse) | | | Not determined | | 9 | 147875502 | 181875616 | Mouse | n/a | region | qtl |
| 1000 | 1301722 | Cia9_m | collagen induced arthritis QTL 9 (mouse) | | | Not determined | | 1 | 45783900 | 189303617 | Mouse | n/a | region | qtl |
| 1000 | 11537365 | Cnes4_m | C. neoformans susceptibility locus 4 (mouse) | | | | | 1 | 144449142 | 178449142 | Mouse | n/a | region | qtl |
| 1000 | 1302193 | Cpfd1_m | cerebellum pattern fissures (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 4141160 | Cq1_m | cholesterol QTL 1 (mouse) | | | Not determined | | 1 | 139452188 | 173452308 | Mouse | n/a | region | qtl |
| 1000 | 4142149 | Ctex_m | Ctla4 expression QTL (mouse) | | | Not determined | | 1 | 153557406 | 175468938 | Mouse | n/a | region | qtl |
| 1000 | 12904936 | Edlmmq1_m | extensor digitorum longus muscle mass QTL 1 (mouse) | | | | | 1 | 155002940 | 189002940 | Mouse | n/a | region | qtl |
| 1000 | 1302098 | Eila1_m | ethanol induced locomotor activity 1 (mouse) | | | Not determined | | 1 | 112008822 | 175468938 | Mouse | n/a | region | qtl |
| 1000 | 1301608 | Emo3_m | emotionality 3 (mouse) | | | Not determined | | 1 | 129130858 | 163130993 | Mouse | n/a | region | qtl |
| 1000 | 11251722 | Ewc1_m | ethanol withdrawal and consumption 1 (mouse) | | | | | 1 | 152132744 | 186132744 | Mouse | n/a | region | qtl |
| 1000 | 27226799 | Feml5_m | femur length 5, 5 week (mouse) | | | | | 1 | 122027729 | 164827569 | Mouse | n/a | region | qtl |
| 1000 | 4141233 | Femwf12_m | femur work to failure 12 (mouse) | | | Not determined | | | 141233173 | 175233272 | Mouse | n/a | region | qtl |
| 1000 | 12904957 | Gmmq1_m | gastrocnemius muscle mass QTL 1 (mouse) | | | | | 1 | 155002940 | 189002940 | Mouse | n/a | region | qtl |
| 1000 | 4141149 | Hbnr4_m | Heligmosomoides bakeri nematode resistance 4 (mouse) | | | Not determined | | | 147125258 | 188983224 | Mouse | n/a | region | qtl |
| 1000 | 10412185 | Hcs9_m | hepatocarcinogenesis susceptibility 9 (mouse) | | | Not determined | | 1 | 63854690 | 189303617 | Mouse | n/a | region | qtl |
| 1000 | 13464138 | Hdlq107_m | HDL QTL 107 (mouse) | | | | | 1 | 152132744 | 186132744 | Mouse | n/a | region | qtl |
| 1000 | 1301151 | Hdlq14_m | HDL QTL 14 (mouse) | | | Not determined | | 1 | 142489543 | 176489734 | Mouse | n/a | region | qtl |
| 1000 | 10043899 | Hdlq99_m | HDL QTL 99 (mouse) | | | Not determined | | 1 | 147875502 | 181875616 | Mouse | n/a | region | qtl |
| 1000 | 1302128 | Ity3_m | immunity to S. typhimurium 3 (mouse) | | | Not determined | | 11 | 131156308 | 165139464 | Mouse | n/a | region | qtl |
| 1000 | 1301025 | Lbw7_m | lupus NZB x NZW 7 (mouse) | | | Not determined | | 1 | 152038741 | 186038913 | Mouse | n/a | region | qtl |
| 1000 | 1357493 | Lgaq3_m | late growth adjusted QTL 3 (mouse) | | | Not determined | | 1 | 150193673 | 188359312 | Mouse | n/a | region | qtl |
| 1000 | 1357485 | Lgq4_m | late growth QTL 4 (mouse) | | | Not determined | | 1 | 150193673 | 188359312 | Mouse | n/a | region | qtl |
| 1000 | 11049576 | Lmr8a_m | leishmaniasis resistance 8a (mouse) | | | | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1301408 | Lore8_m | loss of righting induced by ethanol 8 (mouse) | | | Not determined | | 1 | 135877901 | 169878015 | Mouse | n/a | region | qtl |
| 1000 | 1357889 | Lprq3_m | lipoprotein QTL 3 (mouse) | | | Not determined | | 1 | 152038741 | 186038913 | Mouse | n/a | region | qtl |
| 1000 | 1301149 | Lrnx12_m | learning-contextual 12 (mouse) | | | Not determined | | 1 | 112008822 | 168186402 | Mouse | n/a | region | qtl |
| 1000 | 14746980 | Manh50_m | mandible shape 50 (mouse) | | | | | 1 | 134131564 | 168131564 | Mouse | n/a | region | qtl |
| 1000 | 10054270 | Nba10_m | New Zealand Black autoimmunity 10 (mouse) | | | Not determined | | 1 | 152794822 | 186438620 | Mouse | n/a | region | qtl |
| 1000 | 4142159 | Nba2_m | New Zealand Black autoimmunity 2 (mouse) | | | Not determined | | | 151835111 | 185835280 | Mouse | n/a | region | qtl |
| 1000 | 10412074 | Nhdlt1_m | non-HDL cholesterol and triglyceride levels 1 (mouse) | | | Not determined | | 1 | 153675990 | 187676105 | Mouse | n/a | region | qtl |
| 1000 | 1357567 | Nidd3k_m | Nidd3 on KK-A<y> (mouse) | | | Not determined | | 7 | 147125258 | 169038913 | Mouse | n/a | region | qtl |
| 1000 | 10412162 | Nobq3_m | New Zealand obese QTL 3 (mouse) | | | Not determined | | 1 | 103933405 | 191225397 | Mouse | n/a | region | qtl |
| 1000 | 10043963 | Obq25_m | obesity QTL 25 (mouse) | | | Not determined | | 1 | 154410512 | 188410512 | Mouse | n/a | region | qtl |
| 1000 | 1357434 | Obsty1_m | obesity 1 (mouse) | | | Not determined | | 1 | 136209950 | 170210094 | Mouse | n/a | region | qtl |
| 1000 | 10054490 | Opefa_m | open field activity (mouse) | | | Not determined | | 1 | 153712853 | 187712853 | Mouse | n/a | region | qtl |
| 1000 | 1300571 | Opfa_m | open field activity (mouse) | | | Not determined | | 1 | 144531347 | 178531592 | Mouse | n/a | region | qtl |
| 1000 | 1301135 | Pas8_m | pulmonary adenoma susceptibility 8 (mouse) | | | Not determined | | 1 | 147125258 | 158233272 | Mouse | n/a | region | qtl |
| 1000 | 12790984 | Pcho7_m | plasma cholesterol 7 (mouse) | | | | | 1 | 147219390 | 181219390 | Mouse | n/a | region | qtl |
| 1000 | 1301467 | Pcir1_m | periosteal circumference 1 (mouse) | | | Not determined | | 1 | 141233173 | 175233272 | Mouse | n/a | region | qtl |
| 1000 | 1301385 | Radpf2_m | radiation pulmonary fibrosis 2 (mouse) | | | Not determined | | 1 | 147125258 | 182873798 | Mouse | n/a | region | qtl |
| 1000 | 11533913 | Rd6m1_m | retinal degeneration 6 modifier 1 (mouse) | | | | | 1 | 141233173 | 175233272 | Mouse | n/a | region | qtl |
| 1000 | 12910522 | Scgq2_m | spontaneous crescentic glomerulonephritis QTL 2 (mouse) | | | | | 1 | 147125258 | 171632257 | Mouse | n/a | region | qtl |
| 1000 | 27095915 | Scvln13_m | sacral vertebrae length 2, 16 week (mouse) | | | | | 1 | 117527730 | 179827565 | Mouse | n/a | region | qtl |
| 1000 | 27095901 | Scvln8_m | sacral vertebrae length 2, 10 week (mouse) | | | | | 1 | 94127725 | 172027567 | Mouse | n/a | region | qtl |
| 1000 | 26884448 | Sklq1_m | skull length QTL 1, 5 week (mouse) | | | | | 1 | 75976637 | 181327565 | Mouse | n/a | region | qtl |
| 1000 | 4141346 | Skmw12_m | skeletal muscle weight 12 (mouse) | | | Not determined | | | 150756737 | 184756922 | Mouse | n/a | region | qtl |
| 1000 | 1301458 | Skts8_m | skin tumor susceptibility 8 (mouse) | | | Not determined | | 1 | 135794822 | 169795012 | Mouse | n/a | region | qtl |
| 1000 | 1301894 | Skull2_m | skull morphology 2 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 1301301 | Sle1_m | systemic lupus erythmatosus susceptibility 1 (mouse) | | | Not determined | | 1 | 152038741 | 186038913 | Mouse | n/a | region | qtl |
| 1000 | 1300969 | Sluc5_m | susceptibility to lung cancer 5 (mouse) | | | Not determined | | 1 | 151186243 | 185186402 | Mouse | n/a | region | qtl |
| 1000 | 1357618 | Splq5_m | spleen weight QTL 5 (mouse) | | | Not determined | | 1 | 150193673 | 188359312 | Mouse | n/a | region | qtl |
| 1000 | 1301191 | Stia1_m | serum transfer induced arthritis 1 (mouse) | | | Not determined | | 1 | 141233173 | 175233272 | Mouse | n/a | region | qtl |
| 1000 | 12904944 | Tammq1_m | tibialis anterior muscle mass QTL 1 (mouse) | | | | | 1 | 155002940 | 189002940 | Mouse | n/a | region | qtl |
| 1000 | 27226767 | Tibl10_m | tibia length 10, 10 week (mouse) | | | | | 1 | 121727729 | 164827569 | Mouse | n/a | region | qtl |
| 1000 | 27226779 | Tibl1_m | tibia length 1, 5 week (mouse) | | | | | 1 | 95527725 | 162027569 | Mouse | n/a | region | qtl |
| 1000 | 1300740 | Tne1_m | total number errors (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 13824984 | Twq5_m | testis weight QTL 5 (mouse) | | | | | 1 | 3069992 | 184732197 | Mouse | n/a | region | qtl |
| 1000 | 27095935 | Ulnl5_m | ulna length 5, 10 week (mouse) | | | | | 1 | 128727737 | 181327565 | Mouse | n/a | region | qtl |
| 1000 | 12880408 | V125Dq3_m | vitamin D active form serum level QTL 3 (mouse) | | | | | 1 | 122927738 | 156927738 | Mouse | n/a | region | qtl |
| 1000 | 1357602 | Vtbt2_m | vertebral trabecular bone trait 2 (mouse) | | | Not determined | | 1 | 139602037 | 173602216 | Mouse | n/a | region | qtl |
| 1000 | 4142014 | Wbcq5_m | white blood cell quantitative locus 5 (mouse) | | | Not determined | | 1 | 141095010 | 175095156 | Mouse | n/a | region | qtl |