| 1000 | 12790991 | Aath1_m | aortic arch atherosclerosis 1 (mouse) | | | | | 1 | 86483929 | 120483929 | Mouse | n/a | region | qtl |
| 1000 | 12791004 | Aath7_m | aortic arch atherosclerosis 7 (mouse) | | | | | 1 | 82832635 | 116832635 | Mouse | n/a | region | qtl |
| 1000 | 1301748 | Abbp1_m | A/J and C57BL/6 blood pressure 1 (mouse) | | | Not determined | | 1 | 62946755 | 120529678 | Mouse | n/a | region | qtl |
| 1000 | 4142291 | Aec2_m | autoimmune exocrinopathy 2 (mouse) | | | Not determined | | | 52457737 | 182250592 | Mouse | n/a | region | qtl |
| 1000 | 10412238 | Alpq5_m | alcohol preference QTL 5 (mouse) | | | Not determined | | 1 | 82832635 | 116832635 | Mouse | n/a | region | qtl |
| 1000 | 1300976 | Bmd19_m | bone mineral density 19 (mouse) | | | Not determined | | 1 | 73266214 | 108838414 | Mouse | n/a | region | qtl |
| 1000 | 4141627 | Bwq7_m | body weight, QTL 7 (mouse) | | | Not determined | | 1 | 92940909 | 124497796 | Mouse | n/a | region | qtl |
| 1000 | 11039528 | Ccc3_m | colitis susceptibility in the Collaborative Cross 3 (mouse) | | | | | 1 | 3680142 | 195051546 | Mouse | n/a | region | qtl |
| 1000 | 1301123 | Cd8mts2_m | CD8 memory T cell subset 2 (mouse) | | | Not determined | | 1 | 96618386 | 130618557 | Mouse | n/a | region | qtl |
| 1000 | 1301722 | Cia9_m | collagen induced arthritis QTL 9 (mouse) | | | Not determined | | 1 | 45783900 | 189303617 | Mouse | n/a | region | qtl |
| 1000 | 12879492 | Ecgnq1_m | eccrine gland number QTL 1 (mouse) | | | | | 1 | 103278062 | 120535225 | Mouse | n/a | region | qtl |
| 1000 | 4141914 | Gcsfis_m | G-CSF induced splenomegaly (mouse) | | | Not determined | | | 74516235 | 148715579 | Mouse | n/a | region | qtl |
| 1000 | 10412185 | Hcs9_m | hepatocarcinogenesis susceptibility 9 (mouse) | | | Not determined | | 1 | 63854690 | 189303617 | Mouse | n/a | region | qtl |
| 1000 | 12879491 | Hfnq1_m | hair follicle number QTL 1 (mouse) | | | | | 1 | 93310310 | 123636759 | Mouse | n/a | region | qtl |
| 1000 | 1301304 | Hrq3_m | heart rate quantitative locus 3 (mouse) | | | Not determined | | 1 | 73615692 | 107615830 | Mouse | n/a | region | qtl |
| 1000 | 1357847 | Jckm2_m | juvenile cystic kidney modifier 2 (mouse) | | | Not determined | | 1 | 74991977 | 133290937 | Mouse | n/a | region | qtl |
| 1000 | 1357753 | Kidq2_m | kidney weight QTL 2 (mouse) | | | Not determined | | 1 | 34760138 | 150193871 | Mouse | n/a | region | qtl |
| 1000 | 11667074 | Led2_m | late embryonic death 2 (mouse) | | | | | 1 | 85696027 | 117195081 | Mouse | n/a | region | qtl |
| 1000 | 13452395 | Leusq2_m | leucocytosis susceptibility QTL 2 (mouse) | | | | | 1 | 80245593 | 126386517 | Mouse | n/a | region | qtl |
| 1000 | 13452398 | Leusq5_m | leucocytosis susceptibility QTL 5 (mouse) | | | | | 1 | 98474785 | 126386517 | Mouse | n/a | region | qtl |
| 1000 | 1300989 | Lrdg1_m | light induced retinal degeneration 1 (mouse) | | | Not determined | | 1 | 73755175 | 147125370 | Mouse | n/a | region | qtl |
| 1000 | 1301193 | Lxw3_m | lupus BXSB x NZW 3 (mouse) | | | Not determined | | 1 | 102968534 | 136968667 | Mouse | n/a | region | qtl |
| 1000 | 4141329 | Mleu1_m | myeloid leukemia survival 1 (mouse) | | | Not determined | | | 89786512 | 123786512 | Mouse | n/a | region | qtl |
| 1000 | 1558928 | Mord2_m | modifier of retinal degeneration 2 (mouse) | | | Not determined | | 1 | 77123115 | 110536075 | Mouse | n/a | region | qtl |
| 1000 | 4142394 | Mssq1_m | mandible size and shape QTL 1 (mouse) | | | Not determined | | | 73615692 | 107615830 | Mouse | n/a | region | qtl |
| 1000 | 12050069 | Nabq1_m | nasal bone morphology QTL 1 (mouse) | | | | | 1 | 79858683 | 113858791 | Mouse | n/a | region | qtl |
| 1000 | 1301350 | Nidd4k_m | Nidd4 on KK-A (mouse) | | | Not determined | | 7 | 82291982 | 147125370 | Mouse | n/a | region | qtl |
| 1000 | 15039333 | Nmrs1_m | NAFLD-associated magnetic resonance shift 1 (mouse) | | | | | 1 | 89786512 | 123786512 | Mouse | n/a | region | qtl |
| 1000 | 10412162 | Nobq3_m | New Zealand obese QTL 3 (mouse) | | | Not determined | | 1 | 103933405 | 191225397 | Mouse | n/a | region | qtl |
| 1000 | 1301536 | Pbbcp1_m | peripheral blood B cell percentage 1 (mouse) | | | Not determined | | 1 | 99507660 | 133507845 | Mouse | n/a | region | qtl |
| 1000 | 27095931 | Pglq1_m | pelvic girdle length QTL 1, 5 week (mouse) | | | | | 1 | 75976637 | 128527737 | Mouse | n/a | region | qtl |
| 1000 | 27095928 | Pglq6_m | pelvic girdle length QTL 6, 10 week (mouse) | | | | | 1 | 75976637 | 148775742 | Mouse | n/a | region | qtl |
| 1000 | 1357439 | Popoa_m | premature ovulation and primary oocyte arrest (mouse) | | | Not determined | | 1 | 82643189 | 135615379 | Mouse | n/a | region | qtl |
| 1000 | 27095913 | Scvln2_m | sacral vertebrae length 2, 5 week (mouse) | | | | | 1 | 94127725 | 148775742 | Mouse | n/a | region | qtl |
| 1000 | 27095901 | Scvln8_m | sacral vertebrae length 2, 10 week (mouse) | | | | | 1 | 94127725 | 172027567 | Mouse | n/a | region | qtl |
| 1000 | 26884448 | Sklq1_m | skull length QTL 1, 5 week (mouse) | | | | | 1 | 75976637 | 181327565 | Mouse | n/a | region | qtl |
| 1000 | 1357721 | Sle17_m | systematic lupus erythematosus susceptibility 17 (mouse) | | | Not determined | | 1 | 39132808 | 126445310 | Mouse | n/a | region | qtl |
| 1000 | 1357488 | Splq3_m | spleen weight QTL 3 (mouse) | | | Not determined | | 1 | 34760138 | 150193871 | Mouse | n/a | region | qtl |
| 1000 | 1300841 | Ssial1_m | susceptibility to sialadenitis 1 (mouse) | | | Not determined | | 1 | 63920002 | 153557562 | Mouse | n/a | region | qtl |
| 1000 | 1357760 | Synch3_m | synechia 3 (mouse) | | | Not determined | | 1 | 92901442 | 126901550 | Mouse | n/a | region | qtl |
| 1000 | 27226779 | Tibl1_m | tibia length 1, 5 week (mouse) | | | | | 1 | 95527725 | 162027569 | Mouse | n/a | region | qtl |
| 1000 | 1301753 | Tir3a_m | trypansomiasis infection response 3a (mouse) | | | Not determined | | 1 | 97053986 | 131054190 | Mouse | n/a | region | qtl |
| 1000 | 10045976 | Tir6_m | trypanosome infection response 6 (mouse) | | | Not determined | | 1 | 93536855 | 120529678 | Mouse | n/a | region | qtl |
| 1000 | 13824984 | Twq5_m | testis weight QTL 5 (mouse) | | | | | 1 | 3069992 | 184732197 | Mouse | n/a | region | qtl |
| 1000 | 27095918 | Ulnl1_m | ulna length 1, 5 week (mouse) | | | | | 1 | 67339159 | 129727737 | Mouse | n/a | region | qtl |
| 1000 | 1558860 | W10q7_m | weight 10 weeks QTL 7 (mouse) | | | Not determined | | 1 | 34760138 | 150193871 | Mouse | n/a | region | qtl |
| 1000 | 4141725 | Wbcq4_m | white blood cell quantitative locus 4 (mouse) | | | Not determined | | 1 | 79858683 | 113858791 | Mouse | n/a | region | qtl |