| 1000 | 1301348 | Alcp5_m | alcohol preference locus 5 (mouse) | | | Not determined | | 2 | 163486407 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1301677 | Alcp6_m | alcohol preference locus 6 (mouse) | | | Not determined | | 2 | 163486407 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1300806 | Aod4_m | autoimmune ovarian dysgenesis 4 (mouse) | | | Not determined | | 2 | 145228719 | 179228841 | Mouse | n/a | region | qtl |
| 1000 | 11353826 | Bdln10_m | body length 10 (mouse) | | | | | 2 | 140441482 | 174441482 | Mouse | n/a | region | qtl |
| 1000 | 1300751 | Bdt1_m | bone density traits 1 (mouse) | | | Not determined | | 2 | 149988902 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1301618 | Bglu1_m | blood glucose level 1 (mouse) | | | Not determined | | 2 | 117942930 | 174324863 | Mouse | n/a | region | qtl |
| 1000 | 1301783 | Bhr1_m | bronchial hyperresponsiveness 1 (mouse) | | | Not determined | | 2 | 142593476 | 178442452 | Mouse | n/a | region | qtl |
| 1000 | 1301019 | Bmd6_m | bone mineral density 6 (mouse) | | | Not determined | | 2 | 151778297 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1357484 | Bsbob_m | BSB obesity (mouse) | | | Not determined | | 2 | 143773445 | 165665019 | Mouse | n/a | region | qtl |
| 1000 | 1301961 | Bts1_m | bladder tumor susceptibility 1 (mouse) | | | Not determined | | 2 | 132024159 | 166024330 | Mouse | n/a | region | qtl |
| 1000 | 12790983 | Bwq12_m | body weight QTL 12 (mouse) | | | | | 2 | 148238204 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 10054066 | Bwq9_m | body weight QTL 9 (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 1300622 | Cfld1_m | cystic fibrosis lung disease 1 (mouse) | | | Not determined | | 2 | 155823920 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 4141703 | Chlq13_m | circulating hormone level QTL 13 (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 1357435 | Epfq2_m | epididymal fat pad weight QTL 2 (mouse) | | | Not determined | | 2 | 162736926 | 178442452 | Mouse | n/a | region | qtl |
| 1000 | 27226749 | Femd10_m | femur midshaft diameter 10, 16 week (mouse) | | | | | 2 | 124441920 | 168241920 | Mouse | n/a | region | qtl |
| 1000 | 1558917 | Gct8_m | granulosa cell tumorigenesis 8 (mouse) | | | Not determined | | 2 | 149236907 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1558939 | Gnf1_m | growth and fatness 1 (mouse) | | | Not determined | | 2 | 143773445 | 169117924 | Mouse | n/a | region | qtl |
| 1000 | 1558867 | Gnf3_m | growth and fatness 3 (mouse) | | | Not determined | | 2 | 152699221 | 169117924 | Mouse | n/a | region | qtl |
| 1000 | 10043956 | Gnf5_m | growth and fatness 5 (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 1301865 | Hdlq19_m | HDL QTL 19 (mouse) | | | Not determined | | 2 | 145518775 | 179518926 | Mouse | n/a | region | qtl |
| 1000 | 12801461 | Intim1_m | intima modifier 1 (mouse) | | | | | 2 | 142428347 | 176428450 | Mouse | n/a | region | qtl |
| 1000 | 12801456 | Intmrm1_m | intima/media ratio modifier 1 (mouse) | | | | | 2 | 142428347 | 176428450 | Mouse | n/a | region | qtl |
| 1000 | 1357537 | Lith12_m | lithogenic gene 12 (mouse) | | | Not determined | | 2 | 156196464 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 4142450 | Lmr16_m | leishmaniasis resistance 16 (mouse) | | | Not determined | | 2 | 150212221 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 11049566 | Lmr28e_m | leishmaniasis resistance 28e (mouse) | | | | | 2 | 133144911 | 167145058 | Mouse | n/a | region | qtl |
| 1000 | 11049567 | Lmr28f_m | leishmaniasis resistance 28f (mouse) | | | | | 2 | 133144911 | 167145058 | Mouse | n/a | region | qtl |
| 1000 | 1300867 | Lore2_m | loss of righting induced by ethanol 2 (mouse) | | | Not determined | | 2 | 144515861 | 180896594 | Mouse | n/a | region | qtl |
| 1000 | 1301085 | Lrnx10_m | learning-contextual 10 (mouse) | | | Not determined | | 2 | 150212221 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 11038702 | Ltpr2_m | Leishmania tropica response 2 (mouse) | | | | | 2 | 103095716 | 167212356 | Mouse | n/a | region | qtl |
| 1000 | 11038701 | Ltpr2e_m | Leishmania tropica response 2e (mouse) | | | | | 2 | 150212221 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 14747002 | Mancz3_m | mandible centroid size 3 (mouse) | | | | | 2 | 152329820 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 5491196 | Mobq6_m | multigenic obesity QTL 6 (mouse) | | | Not determined | | 2 | 85724269 | 180896594 | Mouse | n/a | region | qtl |
| 1000 | 1300688 | Nidd2k_m | Nidd2 on KK-A (mouse) | | | Not determined | | 2 | 158078337 | 178442452 | Mouse | n/a | region | qtl |
| 1000 | 4142211 | Nilac3_m | nicotine induced locomotor activity 3 (mouse) | | | Not determined | | 2 | 148664893 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1300846 | Pbwg11_m | postnatal body weight growth 11 (mouse) | | | Not determined | | 2 | 138966600 | 172966729 | Mouse | n/a | region | qtl |
| 1000 | 1300676 | Prdt2_m | prion disease incubation time 2 (mouse) | | | Not determined | | 2 | 164515154 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 12910810 | Pwbwq2_m | pre-weaning body weight QTL 2 (mouse) | | | | | 2 | 160611165 | 169794802 | Mouse | n/a | region | qtl |
| 1000 | 12910800 | Pwgrq3_m | pre-weaning growth rate QTL 3 (mouse) | | | | | 2 | 160611165 | 169794802 | Mouse | n/a | region | qtl |
| 1000 | 1301907 | Rends_m | renal disease susceptibility (mouse) | | | Not determined | | 2 | 135699221 | 169699361 | Mouse | n/a | region | qtl |
| 1000 | 11341717 | Rvfs1_m | Rift Valley fever susceptibility 1 (mouse) | | | | | 2 | 135432544 | 173449616 | Mouse | n/a | region | qtl |
| 1000 | 12910520 | Scgq3_m | spontaneous crescentic glomerulonephritis QTL 3 (mouse) | | | | | 2 | 151709273 | 174389124 | Mouse | n/a | region | qtl |
| 1000 | 1302003 | Sluc17_m | susceptibility to lung cancer 17 (mouse) | | | Not determined | | 2 | 162433493 | 181755017 | Mouse | n/a | region | qtl |
| 1000 | 1558991 | Tailq4_m | tail length QTL 4 (mouse) | | | Not determined | | 2 | 162736926 | 178442452 | Mouse | n/a | region | qtl |
| 1000 | 1302013 | Tbbmd3_m | total body bone mineral density 3 (mouse) | | | Not determined | | 2 | 145196949 | 179197085 | Mouse | n/a | region | qtl |