| 1000 | 1301701 | Aggr1_m | aggression 1 (mouse) | | | Not determined | | 10 | 119506908 | 125575232 | Mouse | n/a | region | qtl |
| 1000 | 4142461 | Bmd25_m | bone mineral density 25 (mouse) | | | Not determined | | 10 | 97217101 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 26884383 | Bzwq3_m | bi-zygomatic width QTL 3, 5 week (mouse) | | | | | 10 | 114235905 | 122735905 | Mouse | n/a | region | qtl |
| 1000 | 1357744 | Cfbw4_m | cystic fibrosis body weight 4 (mouse) | | | Not determined | | 10 | 100986516 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 4141361 | Cfmq3_m | cystic fibrosis modifier QTL 3 (mouse) | | | Not determined | | 10 | 101497164 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 1301968 | Estq4_m | estradiol regulated response QTL 4 (mouse) | | | Not determined | | 10 | 100986516 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 1301895 | Exq1_m | exploratory and excitability QTL 1 (mouse) | | | Not determined | | 10 | 102847852 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 1301758 | Fcsa3_m | femoral cross-sectional area 3 (mouse) | | | Not determined | | 10 | 89927651 | 123927754 | Mouse | n/a | region | qtl |
| 1000 | 27226791 | Feml8_m | femur length 8, 5 week (mouse) | | | | | 10 | 119035905 | 125735869 | Mouse | n/a | region | qtl |
| 1000 | 11353843 | Gluq1_m | blood glucose QTL 1 (mouse) | | | | | 10 | 73987216 | 125515907 | Mouse | n/a | region | qtl |
| 1000 | 11353838 | Gluq3_m | blood glucose QTL 3 (mouse) | | | | | 10 | 120243727 | 125515907 | Mouse | n/a | region | qtl |
| 1000 | 11353823 | Homaq2_m | homeostatic model assessment QTL 2 (mouse) | | | | | 10 | 110453347 | 125515907 | Mouse | n/a | region | qtl |
| 1000 | 26884405 | Huml2_m | humerus length 2, 5 week (mouse) | | | | | 10 | 69735830 | 130430862 | Mouse | n/a | region | qtl |
| 1000 | 1301901 | Im5_m | immunoregulatory 5 (mouse) | | | Not determined | | 10 | 101497164 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11353822 | Insq12_m | insulin QTL 12 (mouse) | | | | | 10 | 110453347 | 125515907 | Mouse | n/a | region | qtl |
| 1000 | 14696727 | Kidrq2_m | kidney weight, right QTL 2 (mouse) | | | | | 10 | 102902508 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 1300678 | Leg2_m | longevity extending gene 2 (mouse) | | | Not determined | | 10 | 102506908 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11041664 | Lmr25_m | leishmaniasis resistance 25 (mouse) | | | | | 10 | 108575094 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11049563 | Lmr25a_m | leishmaniasis resistance 25a (mouse) | | | | | 10 | 108575094 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11049570 | Lmr25b_m | leishmaniasis resistance 25b (mouse) | | | | | 10 | 108575094 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11040597 | Lmr5a_m | leishmaniasis resistance 5a (mouse) | | | | | 10 | 99220635 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11040598 | Lmr5b_m | leishmaniasis resistance 5b (mouse) | | | | | 10 | 105179713 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11040595 | Lmr5c_m | leishmaniasis resistance 5c (mouse) | | | | | 10 | 99220635 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11040596 | Lmr5d_m | leishmaniasis resistance 5d (mouse) | | | | | 10 | 105179713 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11040593 | Lmr5e_m | leishmaniasis resistance 5e (mouse) | | | | | 10 | 99220635 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11040594 | Lmr5f_m | leishmaniasis resistance 5f (mouse) | | | | | 10 | 105179713 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 4141153 | Ltgq2_m | liver triglyceride QTL 2 (mouse) | | | Not determined | | | 108515907 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11039516 | Ltpr5_m | Leishmania tropica response 5 (mouse) | | | | | 10 | 90506901 | 125575232 | Mouse | n/a | region | qtl |
| 1000 | 11039496 | Ltpr5b_m | Leishmania tropica response 5b (mouse) | | | | | 10 | 108575094 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 14746996 | Manh69_m | mandible shape 69 (mouse) | | | | | 10 | 104763638 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 27226747 | Metcl10_m | metatarsal-calcaneal length 10, 10 week (mouse) | | | | | 10 | 119035905 | 124835905 | Mouse | n/a | region | qtl |
| 1000 | 27226736 | Metcl15_m | metatarsal-calcaneal length 15, 16 week (mouse) | | | | | 10 | 119035905 | 124835905 | Mouse | n/a | region | qtl |
| 1000 | 27226742 | Metcl4_m | metatarsal-calcaneal length 4, 5 week (mouse) | | | | | 10 | 118135905 | 125435869 | Mouse | n/a | region | qtl |
| 1000 | 11533921 | Mvb2_m | modifier of vibrator 2 (mouse) | | | | | 10 | 97217101 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11533919 | Mvb4_m | modifier of vibrator 4 (mouse) | | | | | 3 | 97217101 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 1357482 | Nhdlq4_m | non-HDL QTL 4 (mouse) | | | Not determined | | 10 | 105041304 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 1300679 | Nociq2_m | nociceptive sensitivity inflammatory QTL 2 (mouse) | | | Not determined | | 10 | 105041304 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 4141007 | Obrq10_m | obesity resistance QTL 10 (mouse) | | | Not determined | | | 103243727 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 4142089 | Obrq9_m | obesity resistance QTL 9 (mouse) | | | Not determined | | | 108515907 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 11353834 | Pcholq2_m | plasma cholesterol QTL 2 (mouse) | | | | | 10 | 120243727 | 125515907 | Mouse | n/a | region | qtl |
| 1000 | 11353832 | Pcholq4_m | plasma cholesterol QTL 4 (mouse) | | | | | 10 | 73987216 | 125515907 | Mouse | n/a | region | qtl |
| 1000 | 27095911 | Pglq15_m | pelvic girdle length QTL 15, 16 week (mouse) | | | | | 10 | 39175996 | 129635869 | Mouse | n/a | region | qtl |
| 1000 | 27095926 | Pglq4_m | pelvic girdle length QTL 4, 5 week (mouse) | | | | | 10 | 119035905 | 124835905 | Mouse | n/a | region | qtl |
| 1000 | 4141742 | Psds4_m | psoriasis-like skin disease severity 4 (mouse) | | | Not determined | | | 122041304 | 124883196 | Mouse | n/a | region | qtl |
| 1000 | 13506931 | Recrq11_m | recombination rate in male meiosis QTL 11 (mouse) | | | | | 10 | 114335905 | 123635905 | Mouse | n/a | region | qtl |
| 1000 | 1302067 | Scc9_m | colon tumor susceptibility 9 (mouse) | | | Not determined | | 10 | 18259333 | 125575232 | Mouse | n/a | region | qtl |
| 1000 | 27095902 | Scvln11_m | sacral vertebrae length 2, 10 week (mouse) | | | | | 10 | 110035861 | 125435869 | Mouse | n/a | region | qtl |
| 1000 | 27226795 | Scvln17_m | sacral vertebrae length 2, 16 week (mouse) | | | | | 10 | 118435905 | 124835905 | Mouse | n/a | region | qtl |
| 1000 | 27095906 | Scvln5_m | sacral vertebrae length 2, 5 week (mouse) | | | | | 10 | 119035905 | 124835905 | Mouse | n/a | region | qtl |
| 1000 | 26884443 | Sklq5_m | skull length QTL 5, 5 week (mouse) | | | | | 10 | 119035905 | 124835905 | Mouse | n/a | region | qtl |
| 1000 | 26884377 | Skwq3_m | skull length QTL 3, 5 week (mouse) | | | | | 10 | 114635905 | 122735905 | Mouse | n/a | region | qtl |
| 1000 | 1302200 | Sle12_m | systematic lupus erythematosus susceptibility 12 (mouse) | | | Not determined | | 10 | 105041304 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 4141402 | T2dm1sa_m | type 2 diabetes mellitus 1 in SMXA RI mice (mouse) | | | Not determined | | | 97758644 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 4142386 | Tgq20_m | triglyceride QTL 20 (mouse) | | | Not determined | | | 88836456 | 122836456 | Mouse | n/a | region | qtl |
| 1000 | 4141487 | Tgq21_m | triglyceride QTL 21 (mouse) | | | Not determined | | | 104110021 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 27226772 | Tibl13_m | tibia length 13, 10 week (mouse) | | | | | 10 | 18875748 | 129635869 | Mouse | n/a | region | qtl |
| 1000 | 27226764 | Tibl19_m | tibia length 19, 16 week (mouse) | | | | | 10 | 39175996 | 129635869 | Mouse | n/a | region | qtl |
| 1000 | 27226784 | Tibl4_m | tibia length 4, 5 week (mouse) | | | | | 10 | 119035905 | 125435869 | Mouse | n/a | region | qtl |
| 1000 | 27226725 | Tibw1_m | tibia width 1, proximal, 5 week (mouse) | | | | | 10 | 102735861 | 123235905 | Mouse | n/a | region | qtl |
| 1000 | 27226718 | Tibw3_m | tibia width 3, proximal, 10 week (mouse) | | | | | 10 | 118835905 | 125435869 | Mouse | n/a | region | qtl |
| 1000 | 27226722 | Tibw7_m | tibia width 7, proximal, 16 week (mouse) | | | | | 10 | 108635861 | 125435869 | Mouse | n/a | region | qtl |
| 1000 | 12880413 | V125Dq9_m | vitamin D active form serum level QTL 9 (mouse) | | | | | 10 | 97535905 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 1357544 | Vtbt10_m | vertebral trabecular bone trait 10 (mouse) | | | Not determined | | 10 | 97217101 | 130530862 | Mouse | n/a | region | qtl |
| 1000 | 26884433 | Zlq2_m | zygomatic length QTL 2, 5 week (mouse) | | | | | 10 | 113535905 | 125735869 | Mouse | n/a | region | qtl |
| 1000 | 26884430 | Zlq5_m | zygomatic length QTL 5, 10 week (mouse) | | | | | 10 | 67835830 | 124835905 | Mouse | n/a | region | qtl |